G1977050 (LOC100194703)


Basic Information

Item Value
gene id G1977050
gene name LOC100194703
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34480651 ~ 34481106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2260080
ccatcatactggaaaaggcattgttcatcaacaaactgttcctggatggttgggagaagttcctctaggaggatgtgttggtaccattctttattcatggctgtgttcttaggcaaaactgTGAGTGAgctcactcccttggctgagaagaaaCCCCAcccatgaatggtctcaggatgctttactgttggcatgacacgggactgatggtagcactcaccttgtcttctctggacaagcttttttccagatgccccaaacaatcggaaaggggattcagagaaaatgactttaccccagtcctcagcagtccaatccctgtaccttttgcagaatatcagtctgtccctcatgtttttcctggagagaagtggcttctttgctgcccttcttgacaccaggccatcctccaaaagtattcgcctcactgtgcgtgcagatgcactaacacctgcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2260080 True 456 lncRNA 0.48 1 34480651 34481106

Neighbor

gene id symbol gene type direction distance location
LOC110504230 LOC106611223 coding downstream 38308 34292468 ~ 34442343 (-)
gphna LOC106611263 coding downstream 245106 34118176 ~ 34235545 (-)
LOC118944181 NA coding downstream 312393 34167460 ~ 34168258 (-)
mpp5a LOC106611266 coding downstream 362804 34073214 ~ 34117847 (-)
eif2s1a if2a coding downstream 408042 34069156 ~ 34072609 (-)
pth2 NA coding upstream 218063 34699169 ~ 34700207 (-)
rin3 LOC106611275 coding upstream 234622 34715728 ~ 34739802 (-)
LOC110505825 LOC106611276 coding upstream 293778 34774884 ~ 34893972 (-)
LOC110504231 LOC106611278 coding upstream 416470 34897576 ~ 34912793 (-)
LOC118944354 LOC106611278 coding upstream 431804 34912910 ~ 34950168 (-)
G1977049 NA non-coding downstream 329 34480039 ~ 34480322 (-)
G1977048 NA non-coding downstream 1002 34479213 ~ 34479649 (-)
G1977046 NA non-coding downstream 1842 34477620 ~ 34478809 (-)
G1977030 NA non-coding downstream 24850 34454314 ~ 34455801 (-)
G1977027 NA non-coding downstream 34316 34445779 ~ 34446335 (-)
G1977090 NA non-coding upstream 73467 34554573 ~ 34563512 (-)
G1976887 NA non-coding upstream 85808 34566914 ~ 34670890 (-)
G1977175 NA non-coding upstream 261202 34742308 ~ 34742527 (-)
G1977166 NA non-coding upstream 269423 34750529 ~ 34752123 (-)
G1975763 NA other downstream 923840 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1156326 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2493767 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2862152 31614421 ~ 31618499 (-)
G1977226 NA other upstream 394279 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 489046 34970065 ~ 35000444 (-)
G1977346 NA other upstream 545994 35027100 ~ 35100978 (-)
G1977392 NA other upstream 571944 35053050 ~ 35056926 (-)
G1979142 NA other upstream 1730840 36211946 ~ 36216230 (-)

Expression


Co-expression Network