G1977090


Basic Information

Item Value
gene id G1977090
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34554573 ~ 34563512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2260121
ggtgtagaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtagaaagctcttagagacttacccagaacgactcacagctgtcatcactaccaatccaggtgtggaaagctcttagagacttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagatttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagatttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagac
>TU2260120
ggtgtagaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtagaaagctcttagagacttacccagaacgactcacagctgtcatcactaccaatccaggtgtggaaagctcttagagacttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagatttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagatttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtagaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtggaaagctcttagagacttacccagaacgacac
>TU2260123
ggtgtagaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtagaaagctcttagagacttacccagaacgactcacagctgtcatcactaccaatccaggtgtggaaagctcttagagacttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagatttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagacttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagatttacccagaaagactcacagctgtaatcactaccaatccaggtgtggaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtagaaagctcttagagacttacccagaaagactcacagctgtcatcactaccaatccaggtgtggaaagctcttagagacttacccagaacgacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2260121 False 332 lncRNA 0.45 3 34554573 34563512
TU2260120 False 472 lncRNA 0.46 2 34562919 34563512
TU2260123 True 534 lncRNA 0.46 2 34562919 34563512

Neighbor

gene id symbol gene type direction distance location
LOC110504230 LOC106611223 coding downstream 112230 34292468 ~ 34442343 (-)
gphna LOC106611263 coding downstream 319028 34118176 ~ 34235545 (-)
LOC118944181 NA coding downstream 386315 34167460 ~ 34168258 (-)
mpp5a LOC106611266 coding downstream 436726 34073214 ~ 34117847 (-)
eif2s1a if2a coding downstream 481964 34069156 ~ 34072609 (-)
pth2 NA coding upstream 135657 34699169 ~ 34700207 (-)
rin3 LOC106611275 coding upstream 152216 34715728 ~ 34739802 (-)
LOC110505825 LOC106611276 coding upstream 211372 34774884 ~ 34893972 (-)
LOC110504231 LOC106611278 coding upstream 334064 34897576 ~ 34912793 (-)
LOC118944354 LOC106611278 coding upstream 349398 34912910 ~ 34950168 (-)
G1977050 LOC100194703 non-coding downstream 73467 34480651 ~ 34481106 (-)
G1977049 NA non-coding downstream 74251 34480039 ~ 34480322 (-)
G1977048 NA non-coding downstream 74924 34479213 ~ 34479649 (-)
G1977046 NA non-coding downstream 75764 34477620 ~ 34478809 (-)
G1977030 NA non-coding downstream 98772 34454314 ~ 34455801 (-)
G1976887 NA non-coding upstream 3402 34566914 ~ 34670890 (-)
G1977175 NA non-coding upstream 178796 34742308 ~ 34742527 (-)
G1977166 NA non-coding upstream 187017 34750529 ~ 34752123 (-)
G1977163 NA non-coding upstream 191976 34755488 ~ 34756430 (-)
G1975763 NA other downstream 997762 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1230248 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2567689 31986443 ~ 31986884 (-)
G1973835 LOC106611243 other downstream 2936074 31614421 ~ 31618499 (-)
G1977226 NA other upstream 311873 34875385 ~ 34876181 (-)
LOC110505829 LOC106611279 other upstream 406640 34970065 ~ 35000444 (-)
G1977346 NA other upstream 463588 35027100 ~ 35100978 (-)
G1977392 NA other upstream 489538 35053050 ~ 35056926 (-)
G1979142 NA other upstream 1648434 36211946 ~ 36216230 (-)

Expression


Co-expression Network