G1977345


Basic Information

Item Value
gene id G1977345
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34966226 ~ 34967869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2260396
CAACATGTAGGCAGCGTggaactccctctctgtctcacagaGCAACATGTAGGCAGCGTggaactccctctctgtctcatagAGCAGCTATGATGGGACTCATCCCAAGGCAGACACAGAcggtgttcagtcagtcagttgcCTTAATCATGTGTTTTCTCTTGTCTTCCCCTGGCTGTGTGTAAAGCAAGGGATAACtgaactgtgtctgtctgtctactctgtGCTGAGGATCACTCCACTGCTTAGCCCCAACCTACCGTCAGGTTCCTCCCATAGGCTGTATAGggttctccctttccctctttgacaggtgtgttcaaatcaaatgttatttgtcacatgcgccgaatacaacaggtgtagactttactgtgaaatgcttgtttaggagccctttcccaacaatgcagtgaaaAAGTAAGAATAATTAGCAAAATAAAAAAGGGAATAatgacacaataaaataacagtaacgagactatatacaaggagtaccagtacagagtcagtgtgcaggggtacgaggtaactgaggtaatatgtacatgtaggtaggggtaaaagtgacgaGGCAATCAGGATAAGATCTTAAACAGATtagcaactgtgtgtgtgtgtgtgtctgtcgtcattatgcatgtgtgagtgtgtgtgtgtgtgtgtgtgttctgccttTATAGATCTGTGGGAACTATTTCTCCAGCAAATTAGCATCAGATAGATTGCTTTGCTTTCTGTTGGCAGCTCTGTTCTTATTGGCTCGTTTGGCCCAATCAAGTTGTCCATTAACTGGACAGAATGCGTGACTTCAACGTGAGTAACAATTTGACCAGTGAGCTGTGTCTGGATTCTGGAATCAGAACCGAGGTTGAGTGTTGTAAGGGTTTTAAATTTCTCTTGGTTGTATGATAAAGGTCTGTTTTTACATCTAGAGATTGTGATGTAAACATCAATATAGTACCACACCAAGCAGTATTGCGATATCTTTTCAATTCTAGGCTATATTCGGTACTTCCATAAGCTAACTAACTgcaatttttttatatataactTTAAAAAGTGAAAAGTATTAATTTCAAAGATCATCTTGATGAACCATCACTTATTGCTTCAGTAATGGCTTCAGTAAAGAGCTAAAGGAATAAACAGTGATGCCAATAATCAATCCATtaattatatttgtattttattgttattattgcaCAAACAAAGTGGTATATTGTTACTTTCCTCACTGAGATTTTGATTTGTCACTGGTGACATGGTGGTGGGATTGTACAGGTGTCACGAAGCTGTCATAGCATGCCTGTATCTGTGCTCCAATGATTGTACTCATTCATGGCCAGGCCACAGATACTGTGTTGTTGGAGGTTTTGGGACAATAGGCTAAACAGCTAAAAACAACatcaacaaacaacaacaaatgaaTATATTGGGTGTATGGATGCTCATTGTTGCCTTTGTTAGATATTTCTTGAAATGGTTCACGTTTTAGTCCTGTGGTGCAACGGTTTAGAAATATGTGTACAGTCAGAAGGAAAGACTGTAACAAGGGGAAGATCTACATTGTACATAACTGTAATTATTTATGTTTGTTTTATCGTTCATACCATATCAATGCCTTGTACAGTGTGTTTTTTT
>TU2260397
GAAGCTGTCATAGCATGCCTGTATCTGTGCTCCAATGATTGTACTCATTCATGGCCAGGCCACAGATACTGTGTTGTTGGAGGTTTTGGGACAATAGGCTAAACAGCTAAAAACAACatcaacaaacaacaacaaatgaaTATATTGGGTGTATGGATGCTCATTGTTGCCTTTGTTAGATATTTCTTGAAATGGTTCACGTTTTAGTCCTGTGGTGCAACGGTTTAGAAATATGTGTACAGTCAGAAGGAAAGACTGTAACAAGGGGAAGATCTACATTGTACATAACTGTAATTATTTATGTTTGTTTTATCGTTCATACCATATCAATGCCTTGTACAGTGTGTTTTTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2260396 False 1644 lncRNA 0.40 1 34966226 34967869
TU2260397 True 353 lncRNA 0.37 1 34966226 34966578

Neighbor

gene id symbol gene type direction distance location
LOC118944135 NA coding downstream 4943 34959801 ~ 34961283 (-)
LOC118944354 LOC106611278 coding downstream 16058 34912910 ~ 34950168 (-)
LOC110504231 LOC106611278 coding downstream 53433 34897576 ~ 34912793 (-)
LOC110505825 LOC106611276 coding downstream 72254 34774884 ~ 34893972 (-)
rin3 LOC106611275 coding downstream 226424 34715728 ~ 34739802 (-)
LOC110505829 LOC106611279 coding upstream 2196 34970065 ~ 35000444 (-)
LOC110505831 LOC106611283 coding upstream 148615 35116484 ~ 35141705 (-)
LOC110505834 LOC106611287 coding upstream 431519 35399388 ~ 35402421 (-)
LOC118944372 NA coding upstream 534060 35501929 ~ 35503809 (-)
LOC118944362 NA coding upstream 656797 35624666 ~ 35691185 (-)
G1977237 NA non-coding downstream 64568 34901455 ~ 34901658 (-)
G1977235 NA non-coding downstream 69598 34896077 ~ 34896628 (-)
G1977161 NA non-coding downstream 193914 34756308 ~ 34772312 (-)
G1977163 NA non-coding downstream 209796 34755488 ~ 34756430 (-)
G1977355 NA non-coding upstream 17626 34985495 ~ 34985987 (-)
G1977370 NA non-coding upstream 38371 35006240 ~ 35006454 (-)
G1977373 NA non-coding upstream 41641 35009510 ~ 35009751 (-)
G1977374 NA non-coding upstream 42040 35009909 ~ 35010127 (-)
G1977226 NA other downstream 90045 34875385 ~ 34876181 (-)
G1977046 NA other downstream 487668 34477620 ~ 34478809 (-)
G1975763 NA other downstream 1409415 33556430 ~ 33556811 (-)
G1975453 NA other downstream 1641901 33319729 ~ 33324325 (-)
G1974000 NA other downstream 2979342 31986443 ~ 31986884 (-)
G1977346 NA other upstream 59231 35027100 ~ 35100978 (-)
G1977392 NA other upstream 85181 35053050 ~ 35056926 (-)
G1979142 NA other upstream 1244077 36211946 ~ 36216230 (-)
LOC110504237 LOC106611328 other upstream 1377705 36325431 ~ 36370245 (-)

Expression


Co-expression Network