G1978280 (LOC106611324)


Basic Information

Item Value
gene id G1978280
gene name LOC106611324
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36434137 ~ 36434672 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2261450
AGATATTCCATCCATGGACATCTCTCGACGTGTCAGACTGGGAGAACGAATCAGAGGCTTCTTCGTTGGTAACCTTGGCGATCGAAGCCCTTCCTGACTAGTCCTAGACGTCTTGGGAGATTTTCTTGATTCCATGTTCCTTCTACGCCTGGAATGCTTGGGAGACCTGTTTCCTCTGGATAGTTTAGGCGACTTCTTTCCAACCCACTCATCACTCAACTCAATGTCGCTGGAGTCAGAACAGTTACAGCTGTCAGTCATGTAGGAGATCATAGCATTCACACACACCTCG

Function

NR:

description
PREDICTED: tubby-related protein 4-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2261450 True 292 lncRNA 0.48 2 36434137 36434672

Neighbor

gene id symbol gene type direction distance location
LOC110505849 LOC106611312 coding upstream 18814 36405511 ~ 36415323 (+)
trnaa-agc-9 NA coding upstream 110192 36323873 ~ 36323945 (+)
LOC110505846 LOC106603641 coding upstream 111711 36314846 ~ 36322426 (+)
LOC110505845 dpyl5 coding upstream 119699 36293703 ~ 36314438 (+)
LOC110505844 LOC106611330 coding upstream 151999 36222621 ~ 36282138 (+)
LOC110504238 LOC106611323 coding downstream 14587 36449259 ~ 36631052 (+)
rmnd1 LOC106611322 coding downstream 210888 36645560 ~ 36655878 (+)
LOC110505858 LOC106611340 coding downstream 259292 36693964 ~ 36697191 (+)
trnal-uaa-61 NA coding downstream 264937 36699609 ~ 36699691 (+)
ddo ddo coding downstream 277611 36712283 ~ 36719655 (+)
G1978249 NA non-coding upstream 74190 36359704 ~ 36359947 (+)
G1978181 NA non-coding upstream 213029 36220756 ~ 36221108 (+)
G1978081 NA non-coding upstream 405495 36028113 ~ 36028642 (+)
G1978079 NA non-coding upstream 409099 36021808 ~ 36025038 (+)
G1978102 NA non-coding upstream 413850 36016262 ~ 36020287 (+)
G1978312 NA non-coding downstream 57379 36492051 ~ 36492958 (+)
G1978368 NA non-coding downstream 272827 36707499 ~ 36708827 (+)
G1978398 NA non-coding downstream 305145 36739817 ~ 36741984 (+)
G1978428 NA non-coding downstream 343507 36778179 ~ 36778405 (+)
G1978440 NA non-coding downstream 360982 36795654 ~ 36799376 (+)
LOC110505847 LOC106611313 other upstream 38921 36376220 ~ 36824709 (+)
G1978080 NA other upstream 406400 36026533 ~ 36027737 (+)
G1976689 NA other upstream 1702826 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1730243 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1952216 34481519 ~ 34481921 (+)
LOC110504241 dnah14 other downstream 783589 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 830108 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1286462 37721134 ~ 37729904 (+)
G1980792 NA other downstream 2093935 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 2131206 38565810 ~ 38575881 (+)

Expression


Co-expression Network