G1978312


Basic Information

Item Value
gene id G1978312
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36492051 ~ 36492958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2261501
atgtacattatgccactgtaactattaccccagtatgtacattatgccactaactattaccccagtatgtgcATTATGCCActgtaactattaccccagtatgtacattatgccactgttactattaccccagtatgtacattatgccactaactattaccccagtatgtacattatgccactaactattaccccagtatgtacattatgccactaactattaccccagtatatacattatgccactaactattaccccagtatatacattatgccactaactattaccccagtatatacattatgccactaactattaccccagtatgtacattatgccactaactattaccccagtatgtacattatgccactaactattaccccagtatgtacattatgccactaactattaccccagtatatacattatgccactaactattaccccagtatggacattatgccactaactattaccccagtatgtacattatgccactaactattaccccagtatgtacattatgccactgttactattaccccagtatgtacattatgccactgttactattaccccagtatgtacattatgccactaactattaccccagtatgtacattatgccactgtaactattaccccagtatgtacattatgccactgtaactattaccccagtatgtacattatgccactgtaactattaccccagtatgtacattatgccactaactattaccc

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2261501 True 748 lncRNA 0.37 2 36492051 36492958

Neighbor

gene id symbol gene type direction distance location
LOC110505849 LOC106611312 coding upstream 76728 36405511 ~ 36415323 (+)
trnaa-agc-9 NA coding upstream 168106 36323873 ~ 36323945 (+)
LOC110505846 LOC106603641 coding upstream 169625 36314846 ~ 36322426 (+)
LOC110505845 dpyl5 coding upstream 177613 36293703 ~ 36314438 (+)
LOC110505844 LOC106611330 coding upstream 209913 36222621 ~ 36282138 (+)
rmnd1 LOC106611322 coding downstream 152602 36645560 ~ 36655878 (+)
LOC110505858 LOC106611340 coding downstream 201006 36693964 ~ 36697191 (+)
trnal-uaa-61 NA coding downstream 206651 36699609 ~ 36699691 (+)
ddo ddo coding downstream 219325 36712283 ~ 36719655 (+)
LOC118944353 NA coding downstream 357915 36850873 ~ 36852603 (+)
G1978280 LOC106611324 non-coding upstream 57379 36434137 ~ 36434672 (+)
G1978249 NA non-coding upstream 132104 36359704 ~ 36359947 (+)
G1978181 NA non-coding upstream 270943 36220756 ~ 36221108 (+)
G1978081 NA non-coding upstream 463409 36028113 ~ 36028642 (+)
G1978079 NA non-coding upstream 467013 36021808 ~ 36025038 (+)
G1978368 NA non-coding downstream 214541 36707499 ~ 36708827 (+)
G1978398 NA non-coding downstream 246859 36739817 ~ 36741984 (+)
G1978428 NA non-coding downstream 285221 36778179 ~ 36778405 (+)
G1978440 NA non-coding downstream 302696 36795654 ~ 36799376 (+)
G1978458 NA non-coding downstream 344813 36837771 ~ 36869823 (+)
LOC110505847 LOC106611313 other upstream 96835 36376220 ~ 36824709 (+)
G1978080 NA other upstream 464314 36026533 ~ 36027737 (+)
G1976689 NA other upstream 1760740 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1788157 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2010130 34481519 ~ 34481921 (+)
LOC110504241 dnah14 other downstream 725303 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 771822 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1228176 37721134 ~ 37729904 (+)
G1980792 NA other downstream 2035649 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 2072920 38565810 ~ 38575881 (+)

Expression


Co-expression Network