G1979420 (LOC106611323)


Basic Information

Item Value
gene id G1979420
gene name LOC106611323
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36585245 ~ 36591872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2262834
CCGGCACCAGACGGCTCCAAGTCTCCAGTATGTACTCCAGCGCCACCCCTCTCCTGTGGGCCTGTTTGAGGACTCCCTGGGCCAGGGTCAGTATCTCCTCCAGAGCCTGCTTCTCTCTAGGAACCACCAGGCCACTGATCTTCCTGAAGAACGTCTCCGTCAGGATCATGTGGGACTCCAGACTCTGGAAGaactcCTTGTGTTTGTCAAGGAGAACCTGAACTTCCTCCACAGAGCTGGCGATGACCCTCTGGTCGCCGGCCATCTTGTCTTGAGCAGTGTCCACCAGGTCAGCCAGGTCCTGCAGAGCCCTCTCATATTGCCCCTTCAGAGCCATGTTCTGGTTCAGGCTGCTACGCCGCGAGCCCACCGTCATCACCAACTCCTCATAGGCATCCTGTAGCTTGAGCATCTCATTGATGGACATCTGTTCTGCCTGTAGTTCTGTTCCTCTTGTTTTCAGCTGGGTGATCCTCTGCTCAAACTCTCTCAAACCCTCCTCAGCCTCAGCTATGACCTCAAGCTGTTTGGATCCTGGTCTGTCCGTGGCTCCCGCCAAAGTCTGAAGGATCTGGCACTTGGTGTCGGTTAAATCAGCAAGGACAAGCTGTGACTCCGTCTGGTAGGCAGTGAGTTCCTGCATCCTAGTCCTCATGTGTTCACAGCGTCGCTCCAGGGCAGAGTCCAGAGTTTGCAGCCTCTCTGTCAGACAGTCCAGTGTGTCCTCTAACAGGACCTGGTCCTCCGCACACAGCCCTGTAGGTTGACCTAGGAGACCCCGACTGTGGCTCACCACCCCAGTCACCTCACTGACATCCCTCCCTAAGGCCTCCTGGTTTTGTAGCTGTGTCTCAGCGTTCTCCGTCAGCAGCGTAGGACCAGAGAACAGGGTGTTCTCTACATCATCCAGCCAGGAGGAGGTCGCTGACACAGCCTGGTAGAGATGCTGCTCCATGGGGATCACCTTACCCTCAGAGGCCCCAGTTTGACAAGACATCTCCTCCATCGTTTGGCTGAAACCCTCATATAACATCTTCAGTGAAGATGTGTCCTCTGTTTTACGGATCTCTGCTTTAAACAGGGTACCAGCGGCagttctggaggaaacCTGTTGCTTGTGGTCTTGTTCCAGGGTTTTCTGTAGGAGCTGAAGCTTGGTGCTCAGTTCTTTCCTCAGGCTCTCCCACCTCTGTCTCATCTGGTACTGGGCAGCCCGGGTCTCTCGCTCCAGCAGTATCTCCGGAGAGCAGGGCTCCGTCATACTGACACTGCTAGGTGAGGCCTGCTTCATCaggatctcctctcctctactggcTACAGACTGTAACAGCTTCTTCTGTTCAGCTAGCTGCTCCTCCAGCTCCCTCTGTCTCTGGAGGCTGTCCTGGTGGTGTTGTGAGAGTGTGGTGTGGGCCTGGACCAGGCAGTCCTGCACGATGGGCCCCTGAGACAGAGTGGAGTCAGACTCACTCTCCTCCTGGTCCTGGATGTTGATGTGTTTGTCCTGCAGCATCCTCTGCAGCTCCAGCAGACTTCCCTTCAGCGTCCGCAGCTTCCTGGCCAGCTGCTCTGTGTCCTCCCTCATGTCCATCCGCGTCTCCTGCCTTCCCTCCAGAAGCAGGCTCTCGCTGCGCATGGTCAGCTCCGACAGGGCCACCACCTTCTGCTCTATCTCCTGCAGCATGTTCTGGAGCAGCAGGAGAGAGGCCAGCTCAAACATGATGCTGCCTTCCAAGTGGATCCTTCAGTCAATCAGgcACCAGGCAGCCAGTTAACCAGGCCCACCAGGCAGACAGTTAACCAGGCCCACAAGGCAGCCACTTAACCAGACCCACCAGGCAGACAGTTAACCAGGCCCACCAGGCAGACAGTTAACCAG

Function

NR:

description
nesprin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2262834 True 1879 lncRNA 0.56 13 36585245 36591872

Neighbor

gene id symbol gene type direction distance location
tulp4b LOC106611324 coding downstream 145447 36427772 ~ 36439798 (-)
LOC110505851 LOC106611325 coding downstream 157756 36415448 ~ 36427489 (-)
LOC110505848 LOC106611327 coding downstream 180012 36396400 ~ 36405233 (-)
LOC110504237 LOC106611328 coding downstream 215000 36325431 ~ 36370245 (-)
LOC110504236 LOC106611337 coding downstream 491596 36031757 ~ 36093649 (-)
LOC110505855 LOC106611321 coding upstream 65769 36657641 ~ 36673264 (-)
LOC118944239 NA coding upstream 113628 36705500 ~ 36712775 (-)
sash1b LOC106611319 coding upstream 128067 36719939 ~ 36821246 (-)
stxbp5b LOC106611318 coding upstream 247536 36839408 ~ 36891866 (-)
LOC110504239 NA coding upstream 313201 36905073 ~ 36906800 (-)
G1979385 NA non-coding downstream 40609 36542158 ~ 36544636 (-)
G1979345 NA non-coding downstream 86084 36498883 ~ 36499161 (-)
G1979258 NA non-coding downstream 188966 36336480 ~ 36396279 (-)
G1979285 LOC106611313 non-coding downstream 198618 36386092 ~ 36386627 (-)
G1979186 NA non-coding downstream 205728 36320259 ~ 36379517 (-)
G1979428 LOC106603506 non-coding upstream 32027 36623899 ~ 36627233 (-)
G1979473 NA non-coding upstream 106986 36698858 ~ 36699135 (-)
G1979465 NA non-coding upstream 120619 36712491 ~ 36715698 (-)
G1979481 NA non-coding upstream 133188 36725060 ~ 36733709 (-)
G1979142 NA other downstream 369015 36211946 ~ 36216230 (-)
G1977346 NA other downstream 1484267 35027100 ~ 35100978 (-)
G1977392 NA other downstream 1528319 35053050 ~ 35056926 (-)
LOC110505829 LOC106611279 other downstream 1605738 34970065 ~ 35000444 (-)
G1979607 NA other upstream 373302 36965174 ~ 36965719 (-)
G1979813 NA other upstream 745874 37337746 ~ 37338882 (-)
G1980619 LOC106611366 other upstream 1611569 38203441 ~ 38204163 (-)
G1981678 NA other upstream 2444415 39036287 ~ 39038944 (-)
G1981964 NA other upstream 2964748 39556620 ~ 39569809 (-)

Expression


Co-expression Network