G1979559


Basic Information

Item Value
gene id G1979559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36825782 ~ 36832006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2263004
cactattatcacatatcattcatatggtcagtttgaacagtaggcctggctagacactattatcacatatcattcatacggtcagtttgaacagtaggcctggctagacactattatcacatatcattcatatggtcagtttgaacagtaggtcTGGCTAGacacatatcattcatatggtcagtttgaacagtaggcctggctatacactattatcacatatcattcatatggtcagtttgaacagtaggtcTGGCTAGacacatatcattcatatggtcagtttgaacagtaggcctggctatacactattatcacatatcattcatatggtcagtttgaacagtaggcctggctagacactattATCACGTATCATTCAtacggtcagtttgaacagtaggcctggctagacactattatcacatatcattcACacggtcagtttgaacagtaggcctggctagacactatCACTTATCACTCATACGGTCAGTTTGcacagtaggcctggctagacacGTATCATTCATACGGTCAGTTTGcacagtaggcctggctagacactTATCATTCAtacggtcagtttgaacagtaggcctggctagacacGTATCATTCatatggtcagtttgaacagtaggcctggctataCACTATTATCACGtatcattcatatggtcagtttgCACATCATATTTGTTTTGAAGCAGGAAGTCAAATAGAACACAGTTCCCTTGTTTGTTTACTGAAAGTTCTTCCtttttttgttgtattgtttATCATGGAATTTCAGTTGTGTGTTGTCAGTGTATACATTACGGGCTCTTACTACAGTATCCACTAAACTGAACCCACTTGACAGGCATGTGCAGGAAATGTTTAGCCAAAAATAAGTTTACAAACATGGATATAACCAAAACCTGAAGGGTTGTTAGTATGTTGGAAACACTGTGCAGCTTAAATATAGTTCTCTCTTAGGAGGTTATGGTCATAGATGACGTCAGGGCCAGTTTTCTATTTTGTTCTCCGCTCCGATTGGCTGAGACATAGCGTTGAGGTTAATCTTCTGGGTTATGATTGGCTCAGAGATAGAGTTGAGAGTTATGTACAACAGACTAAGGTGAAGATACCCCTGGACACTCATCTTGGTTCAGTTTTACATTGTCctcactaatggttaaggttaggattggaggAGGGGATTATAGCTGATCcgagatctgtacctaggggaaacgtGAAGGCATTCAaatctttacctccacctaccgAACAATGTGGTAATATTGCGTTACAGGTTAGGTTACTCTCTTAGTCTTCTCACAATCCTTCCATAGTGATTCTAATACAATTTTCTCATGGCTTACTCATTAAAAATGGTTTTGAATGTTTAGAGAAGAAAGCATGTCTCTTATAGCACAAGCAAACATATACAGCTGTCTTTGTATTCGTAGTGTCAGCAGAAGAAGTGACCAAGTGCCATGTAGTGTTCAGTAAAACATTAATTGGTCATTATTTTCTGAATCAACCACTATCTTAACAGACAACTCTCTTCTGCCTTTGCTTATCATGATGCATATATGCTAACCTCTACCTAtttatgtgtgtatctgtgtttgtCAACATCAGGAATATGTGTATGGGCACATATATTTATACTTGCAGCCATAGATGCAGTATATTTCAAAAGATGTGTagagatttttttattttcttccttAATGGTGTTTTTCAGTGTGACTTTGatttaatgttgtttttttcGACGTGCAAGGAGATGCTGCCATTTGTGTTGAGGTAGAGCAATTGATCTTTTGTTCTTTTTTTTCCAAATGATTTTTCATTTGAAGGTTATGTTTTCACTCCAGGTGGCTGCCAACAGCTGTATATAAACAAGTAGTGGGACAAGACAACTGGAGGCAAATCTGATAGTGCTGGTTTTGGCAAAGTGACGCAGGATGTATCCCAAATTACACCttattcaaaagtagtgcactacatactctagggaataaggtgccactTGGGATCCTTCATTTTAAACTGTCGTCTTGATTGACCAATCTCCGACCGTCTGTCTGGATGTGATGATAACTACATAACTCCATAACTCCAGTGTGAAAAATGACCGTCTTTCTGGATGTGATGATAACTACATAACTCCATAACTCCAGTGTGAAAGATGACCGTCTGTCTGGATGTGATGATAACTACATAACTCTATAGGCCTGATCATAAATTATGAAAAATGGTGGAGAAGCTTCTCCATGCTTGCCACTGCTTTATCCAGAAGACCTAGGACATTGGATTTTCAGTTGAGCGGATTTGACGTTACTCATACTACTGACGTGTTAGCTGTTTTTGCACTATTTTTCCTTCCTTTGAATCACTTTTGTCAGTTTAAGtttgttgtttatattttttccTTTTTCTTGTTTATTTCTCTGAAGTACAAAAACATGTTGGACATGTTAACTGTGTGATACGccagtaatatactgactg

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2263004 True 2508 lncRNA 0.39 3 36825782 36832006

Neighbor

gene id symbol gene type direction distance location
sash1b LOC106611319 coding downstream 4536 36719939 ~ 36821246 (-)
LOC118944239 NA coding downstream 114776 36705500 ~ 36712775 (-)
LOC110505855 LOC106611321 coding downstream 152518 36657641 ~ 36673264 (-)
tulp4b LOC106611324 coding downstream 385984 36427772 ~ 36439798 (-)
LOC110505851 LOC106611325 coding downstream 398293 36415448 ~ 36427489 (-)
stxbp5b LOC106611318 coding upstream 7402 36839408 ~ 36891866 (-)
LOC110504239 NA coding upstream 73067 36905073 ~ 36906800 (-)
LOC110504240 LOC106603413 coding upstream 77453 36909459 ~ 36947912 (-)
LOC110505866 LOC106611315 coding upstream 169958 37001964 ~ 37021301 (-)
LOC110505869 NA coding upstream 203670 37035676 ~ 37036927 (-)
G1979536 NA non-coding downstream 23590 36801665 ~ 36802192 (-)
G1979535 NA non-coding downstream 24432 36800597 ~ 36801350 (-)
G1979480 NA non-coding downstream 84226 36739264 ~ 36741556 (-)
G1979481 NA non-coding downstream 92073 36725060 ~ 36733709 (-)
G1979465 NA non-coding downstream 110084 36712491 ~ 36715698 (-)
G1979557 NA non-coding upstream 5730 36837736 ~ 36868976 (-)
G1979572 NA non-coding upstream 43363 36875369 ~ 36875907 (-)
G1979595 NA non-coding upstream 107358 36939364 ~ 36941724 (-)
G1979635 NA non-coding upstream 182108 37014114 ~ 37029326 (-)
G1979638 LOC104954850 non-coding upstream 184078 37016084 ~ 37065954 (-)
LOC110504237 LOC106611328 other downstream 478727 36325431 ~ 36370245 (-)
G1979142 NA other downstream 609552 36211946 ~ 36216230 (-)
G1977346 NA other downstream 1724804 35027100 ~ 35100978 (-)
G1977392 NA other downstream 1768856 35053050 ~ 35056926 (-)
LOC110505829 LOC106611279 other downstream 1846275 34970065 ~ 35000444 (-)
G1979607 NA other upstream 133168 36965174 ~ 36965719 (-)
G1979813 NA other upstream 505740 37337746 ~ 37338882 (-)
G1980619 LOC106611366 other upstream 1371435 38203441 ~ 38204163 (-)
G1981678 NA other upstream 2204281 39036287 ~ 39038944 (-)
G1981964 NA other upstream 2724614 39556620 ~ 39569809 (-)

Expression


Co-expression Network