G1978458


Basic Information

Item Value
gene id G1978458
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36837771 ~ 36869823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2261665
GTGCTTGGATGGAATTTcttgaaaaacaaaaaacATAGATGTAAATCAAacataagaaagaaagaaatggagAAACCAGAGATAAAACACAGAGGGGATGAATCAATCGTTGATACATTATAACCATTGCTATAGATATTAGGACTTCAGGAGCAGAGATGGTTCCACTGGCTGGTTTACATGGAGTTTTCCTCCACACACAGGAGACTCCCCTTAGAGATccattgtgattggttgacactgTGAAGAGCAGACAACCCCTCACCTGGCCCCTGCACAGGTAACCTCACAGGTAACCTCCAACAGTACTCATTGTGTATAGTTATCTTACCTCTTGGAGAACCAAACAGCTGAACAGATAAGAGCATGACTGATGAAACACAGGATCAGTCCCCTTAACCCAGAGGAGAGGGACTAAGGGAATGAGCATCATCTCCTCAGCTGACATAGAAAGAAAGATCCAGAataactcttcctcctcctccgtcCGAGTCGGCCTGTCTGTCAGTCAATTTGTTTGTCAATCTGTCAGTgtcagtcaatctggaaaacttgtgcagtctcaaaaaccatcaaacgctatgatcaaactggctctcatgaagaccgccacaggaaaggaagacccagagtcacctttgctgcagaggacaagttcgtTAGAGTTAACaatctcagaaattgcagccaaaataaatgcttcagagttcaagtaacaaacacatctcaacatcaactgttcagaggagactgcgtgaatcaggccttcatggttgatttactgcaaagaaaccacactaataagaagaagagacttgcttgggccaagaaacatgagcaatggacattagactggtggaaatctgttctttagtctgatgagtccaaatttgagatttttggatccaaccgctgtgtctttgtgagacgcagagtaggtgaacgaatgatctccacatgtgtggttcccaccgtgaagcatggaggatgaggtgtgatggtgctttgctggtggcactgcacacttaaccagaatggctacaacagcattctgcagcaatccgccatcccatctggtttgcgcttagtgggactatcatttgtttttcaacaagacacctccaggctgtgtaagggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggactccacaatcacctgacctcagagtgaaggaaaagtgaAGGACCGCAGAgcgaagaaaaagcagccaacaagtgctcagcatatctgggaactccttcaataatgttggaaaaccattccaggtgaagctagttgagaaaataccaagcatgtgcaaagctgtcatcaagtcaaagggtggctacttcgaagaatctcaaatatattttgatttgtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2261665 True 1401 lncRNA 0.44 3 36837771 36869823

Neighbor

gene id symbol gene type direction distance location
LOC110505847 LOC106611313 coding upstream 13062 36376220 ~ 36824709 (+)
ddo ddo coding upstream 118116 36712283 ~ 36719655 (+)
trnal-uaa-61 NA coding upstream 138080 36699609 ~ 36699691 (+)
LOC110505858 LOC106611340 coding upstream 140580 36693964 ~ 36697191 (+)
rmnd1 LOC106611322 coding upstream 181893 36645560 ~ 36655878 (+)
LOC110505865 LOC106611339 coding downstream 98678 36968501 ~ 36988155 (+)
LOC110505864 LOC106611316 coding downstream 118141 36987964 ~ 36993882 (+)
LOC110505867 LOC106611342 coding downstream 166430 37036253 ~ 37055807 (+)
vsnl1b visl1 coding downstream 186661 37056484 ~ 37065888 (+)
LOC110505872 tdrd15 coding downstream 243283 37113106 ~ 37124247 (+)
G1978440 NA non-coding upstream 38395 36795654 ~ 36799376 (+)
G1978428 NA non-coding upstream 59366 36778179 ~ 36778405 (+)
G1978398 NA non-coding upstream 95787 36739817 ~ 36741984 (+)
G1978368 NA non-coding upstream 128944 36707499 ~ 36708827 (+)
G1978312 NA non-coding upstream 344813 36492051 ~ 36492958 (+)
G1978463 NA non-coding downstream 115 36869938 ~ 36874367 (+)
G1978506 NA non-coding downstream 69692 36939515 ~ 36940256 (+)
G1978507 NA non-coding downstream 72433 36942256 ~ 36942585 (+)
G1978509 NA non-coding downstream 105351 36975174 ~ 36977602 (+)
G1978525 NA non-coding downstream 126534 36996357 ~ 36998622 (+)
G1978080 NA other upstream 810034 36026533 ~ 36027737 (+)
G1976689 NA other upstream 2106460 34730027 ~ 34731311 (+)
G1976680 NA other upstream 2133877 34701980 ~ 34703894 (+)
G1976575 NA other upstream 2355850 34481519 ~ 34481921 (+)
LOC110504241 dnah14 other downstream 348438 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 394957 37264780 ~ 37311200 (+)
G1980026 NA other downstream 851311 37721134 ~ 37729904 (+)
G1980792 NA other downstream 1658784 38528607 ~ 38529105 (+)
LOC110505893 dio2 other downstream 1696055 38565810 ~ 38575881 (+)

Expression


Co-expression Network