G1980026


Basic Information

Item Value
gene id G1980026
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 37721134 ~ 37729904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2263557
CCAAGTTAAACATATTGGTTGACTTTTATTTAAGGCAACTCAATACAATCATTCCAGAACACTTGATCAGAACAGCATTAAAGACAAAGAGAGAAGCATTAAAGACAAAGCATTGAAATAAAACAATCCCATCAGTACAAAACCACTCATGCTTCCCTTATAATccaatttaaaaacaaaatgtgcacaatgACATCAGTGATCACATCgaattaaaaaatcatgtttaaaAAAGTTTAAAGCATCATACATTTTTAAATTGATGTGATTGTTGTGAACTACAGGGAGAGGACTTTTAGCACAGCTTGTGACCAATCAAACAGGAAGCAAGATGGACCTCTAGAGTCAcccactgtgggggggggggggtctcaatAGTCTACTGTAGCTTCCTCTCAATCTGCACAGGTACCTTTCACCCATCCTGCATTTTCAGATCAGTGGAGCTGACAGAGTGGATATGAGGGGAAGAAGCCACTACAGATTGAGACACCAGGAAGAACAGATTTAACTAAAGATGAAGCCATGGTTTACATATGCCCAGTTCCAAGTCAACCCCTAGGCACTATTACACAACTCTCAGATCTGATGAGAATCAGGAACGGGTATGAACTAGACGGTAGTAGGACCTGTAGAAGCAACATGGTAGTAGCTCCGGCCTTTCCCTCACAGGGTAGCATTTTCTAAACCAATTATTTGGAACTAAAGAGGTGCCTAGCAGGGTTAGGGGTTGACTGGGAATTAGAACCAGTGTAAAGGCCAGTGGAGAGGACTGGTACACCTGCAGCAGTCTCTGGAATCACTTCCTGGTTACCGTTGTCATGGTTACAAAGGGACACCAGCCACCATCTCAGACTCGATGCCACAGTGGTCCTTACCTCTCAGGATCTTAAAGAAACCTGGGAGACAGGACAGAAAAACACATTGTGTTGGAGTAGCCAAGAAGCACACAATCTTGATTCACCAATAGTTTGTCCAGAGTTGTTACAGAAGTCGTGTAAGCGTCTCACCATTCTCTCCCCAGTCAGTGTTCCAGGAGTTGGCAGCCAGCCAGTAAGGagttcccccctcctctccccagcccAGGACCTTAATGGCATGGCCTCCTACTGCACTGCCAGAGACATGCTGATACACACCTAGACCGAGAGAAAGTTGGGGTGCCAGAAAAACATTTCAATGTGAGAATGAATTACATTTGTGTCAAATTGCCAACCCATCCTTTAAGGGATTCATTGACAAACAATAATTCACTGTGGTAACTACATGATCATTCTTCCAGTGTTCACTGCATTGCACATCACATAAAGAGTGGAAACATTTATGTATAGATTTTTACCTGAATAGTAAATGTTATCCAAACAATGACATTCCTAGAGCAGTAAAAGCTACACTAGACAGAAGAGGCATGTGTCTTCACCAGACTTGTAGAGCAGGAAGTCTTCATAGACAGTGAAAGCGCCTTCCACAGGTCCGTTCTTCAGGAGCTCAGTCATGATCTGCTGCTCTTCAGAGGGCAAACTGTACGAGCTCTTACCTAGGGTACAGGAGGGAGGGCTTAGTGTGTAGGGCCACTAGGGTACAGGAGGGAGGGCTTAGTGTGTAGGGCCCCTAGGGTACAGGAGGGAGGGCTTAGTGTGTAGGTATTCTTGCTAAGTGGGCATTCATTGTGGTTGAATGTATTTACTTACCGAAGTGTTTGTCCTGCTTGTAGCCAGGCGTGTATCCAGTCTCACACTGGTTGGTACATTGTGGGGTGTCACCCTCCTCTCCTGTACAGGGGGGTCGTGTGCCGTTAACATGGTGCTcacagggagggatggagtaggGCCTGCAACCTGACAGGAGAGACCGGAGAAAGAGttatacagagagggagagagtagggcCTGCATCCTGacaggagaccagagagagagagcgagaggtctgccaggagagagacagggcagtAGAGAGTAGGGTCTGTcaggagagaccagagagggagaagggtctGACATGAgaaacagggaggtagagagtagGGTCTGCCCTGTTTCTCTCCTGGAGGTAGAGTGTAGGGTCTGCCAGGAGATCACTACATACCAACGTGAGAGTCGTAGAGTCCTCCAGTGACCAGTCCCTCTGTAGTCCAGAAGTCCCACGCAGCAGAGGGATAACCACCATTACAACTAGGAACACACACAGTAAGCAATGCTAACAACCTCCCGATGCCTTACATGCAGCCATGTCACAGAGCAAGTGAATGAGAACACACGTACCCCATGCCACAGCTGTCACAGCAGCTGAGCAGGTCTTCAGAGGAGATCTCTACGCTGACCTTGGCGTTGCTATGGATACACACACGGTCGGAGATGGCCTCCGCAGCGCCAAACGCCTGCAGTGGACCAAGCACGTCAAACACTCAACGTCATGGTTCAGTCACAGGAGTATCCTCCAGGGTGACTCAGTCTGTTCTTACCCAGCAGCTGCCACAGGAGCCCTGGTCCCGGATCTCCTTCAGAGTGGGACAGTTGGGCCACTGCTGTCTAGGGTCAAAGGTGTCAGGCAGCTCCACATCCCCTGCATACTGCACCATGGCGGGCAGTTTGGGTCCTTTAAGCTGGGTTCCACACAGTCTCTTAACGTAGCTGTAGTCCACATTATGGAAGTTGTGACCAGCCTTCCATGTAGTGTTGGCCTTGTTGATGTAGTCCACCATCTGGTGGGAGAGCGGAGGTAGGCGGGGCCGGGCCCAGCTGATTGACAGCCCAGACACCAGCGCCAAAAATATCACACGCCACATCACTTCCTGTATCCGCTTGTCAGACGTGCCGAAGACCAGTTACAACACACTCGTTCCAGGTCCACTTCTCCTAAATCACCTGGAAAAGTGTTTTCCGGAGCCGTTCAGTTCTGACCTTTAAATCA
>TU2263556
TGCAGCACAAATACATTCCCTCCATACAACTCAGTCTCACTCACATGGCGGGCAGTTTGGGTCCTTTAAGCTGGGTTCCACACAGTCTCTTAACGTAGCTGTAGTCCACATTATGGAAGTTGTGACCAGCCTTCCATGTAGTGTTGGCCTTGTTGATGTAGTCCACCATCTGGTGGGAGAGCGGAGGTAGGCGGGGCCGGGCCCAGCTGATTGACAGCCCAGACACCAGCGCCAAAAATATCACACGCCACATCACTTCCTGTTATCCGCTTGTCAGACGTGCCGAAGACCAGTTACAACACACTCGTTCCAGGTCCACTTCTCCTAAATCACCTGGAAAAGTGTTT

Function

NR:

description
cathepsin B-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2263557 False 2913 TUCP 0.49 4 37721134 37729904
TU2263556 True 347 lncRNA 0.52 2 37723965 37729872

Neighbor

gene id symbol gene type direction distance location
LOC110505889 LOC106611361 coding upstream 3108 37714129 ~ 37720857 (+)
cenpf cenpf coding upstream 101705 37601134 ~ 37622260 (+)
LOC118944390 NA coding upstream 146818 37577003 ~ 37577147 (+)
LOC118944270 NA coding upstream 248393 37472456 ~ 37475572 (+)
trnal-cag-30 NA coding upstream 336860 37387023 ~ 37387105 (+)
LOC110504245 LOC106611341 coding downstream 68080 37797952 ~ 37900284 (+)
LOC110505821 LOC106611274 coding downstream 338926 38068798 ~ 38078483 (+)
LOC110504247 LOC106611366 coding downstream 463839 38193711 ~ 38327236 (+)
LOC110505893 dio2 coding downstream 835938 38565810 ~ 38575881 (+)
LOC118944191 LOC106611372 coding downstream 1689063 39418935 ~ 39424922 (+)
G1980058 NA non-coding upstream 6778 37715908 ~ 37717187 (+)
G1980054 NA non-coding upstream 16881 37706860 ~ 37707084 (+)
G1980051 NA non-coding upstream 28456 37695195 ~ 37695509 (+)
G1980047 NA non-coding upstream 39383 37684120 ~ 37684582 (+)
G1980042 NA non-coding upstream 48243 37675452 ~ 37675722 (+)
G1980059 LOC106611359 non-coding downstream 4467 37734339 ~ 37735090 (+)
G1980067 NA non-coding downstream 16190 37746062 ~ 37746794 (+)
G1980087 NA non-coding downstream 48314 37778186 ~ 37790213 (+)
G1980109 NA non-coding downstream 126384 37856256 ~ 37856737 (+)
G1980116 NA non-coding downstream 166042 37895914 ~ 37896448 (+)
hivep2b LOC106611354 other upstream 413514 37264780 ~ 37311200 (+)
LOC110504241 dnah14 other upstream 501929 37161387 ~ 37222396 (+)
LOC110505847 LOC106611313 other upstream 1328749 36376220 ~ 36824709 (+)
G1978080 NA other upstream 1696228 36026533 ~ 36027737 (+)
G1976689 NA other upstream 2992654 34730027 ~ 34731311 (+)
G1980792 NA other downstream 798735 38528607 ~ 38529105 (+)
G1981068 NA other downstream 1306494 39036366 ~ 39094814 (+)
LOC110505902 LOC106611388 other downstream 1814248 39543907 ~ 39557667 (+)
G1982355 NA other downstream 2659786 40389658 ~ 40390407 (+)

Expression


Co-expression Network