Gene
RNA
| Item | Value |
|---|---|
| gene id | G1982355 |
| gene name | NA |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 40389658 ~ 40390407 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: trans-Golgi network integral membrane protein 2-like isoform X5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2266230 | False | 493 | TUCP | 0.53 | 3 | 40389658 | 40390407 |
| TU2266233 | False | 445 | TUCP | 0.53 | 3 | 40389658 | 40390407 |
| TU2266234 | True | 516 | TUCP | 0.53 | 3 | 40389658 | 40390269 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505920 | LOC106611413 | coding | upstream | 25489 | 40356100 ~ 40364169 (+) |
| LOC110505913 | LOC106611411 | coding | upstream | 33700 | 40341646 ~ 40355958 (+) |
| LOC110505914 | LOC106611394 | coding | upstream | 79068 | 40292623 ~ 40310590 (+) |
| LOC118944373 | NA | coding | upstream | 97598 | 40290835 ~ 40292060 (+) |
| LOC110505912 | LOC106611380 | coding | upstream | 295586 | 40063662 ~ 40094072 (+) |
| LOC110505926 | LOC106611410 | coding | downstream | 21722 | 40412129 ~ 40427679 (+) |
| LOC110505917 | LOC106611409 | coding | downstream | 50023 | 40440430 ~ 40454794 (+) |
| LOC118944272 | NA | coding | downstream | 188261 | 40578668 ~ 40579658 (+) |
| snx9a | LOC105031565 | coding | downstream | 298781 | 40689188 ~ 40741739 (+) |
| pomca | LOC100510783 | coding | downstream | 429289 | 40819696 ~ 40822826 (+) |
| G1982304 | NA | non-coding | upstream | 54307 | 40334582 ~ 40335351 (+) |
| G1982298 | NA | non-coding | upstream | 55911 | 40328577 ~ 40333747 (+) |
| G1982349 | NA | non-coding | upstream | 70357 | 40318221 ~ 40319301 (+) |
| G1982337 | NA | non-coding | upstream | 122633 | 40266284 ~ 40267025 (+) |
| G1982289 | NA | non-coding | upstream | 180380 | 40208940 ~ 40209278 (+) |
| G1982366 | NA | non-coding | downstream | 39603 | 40430010 ~ 40430401 (+) |
| G1982367 | NA | non-coding | downstream | 41605 | 40432012 ~ 40433321 (+) |
| G1982403 | NA | non-coding | downstream | 135447 | 40525854 ~ 40526773 (+) |
| G1982411 | NA | non-coding | downstream | 141728 | 40532135 ~ 40553006 (+) |
| LOC110505902 | LOC106611388 | other | upstream | 836166 | 39543907 ~ 39557667 (+) |
| G1981068 | NA | other | upstream | 1294844 | 39036366 ~ 39094814 (+) |
| LOC110505893 | dio2 | other | upstream | 1815298 | 38565810 ~ 38575881 (+) |
| G1980792 | NA | other | upstream | 1860553 | 38528607 ~ 38529105 (+) |
| G1980026 | NA | other | upstream | 2659754 | 37721134 ~ 37729904 (+) |
| G1983277 | NA | other | downstream | 657144 | 41047551 ~ 41047902 (+) |
| G1983387 | NA | other | downstream | 825068 | 41215475 ~ 41216752 (+) |
| LOC110504259 | LOC106603281 | other | downstream | 907299 | 41297432 ~ 41350749 (+) |
| G1983499 | NA | other | downstream | 1057995 | 41448402 ~ 41449340 (+) |
| LOC110505959 | LOC106611457 | other | downstream | 1349800 | 41740173 ~ 41757394 (+) |
