G1983747


Basic Information

Item Value
gene id G1983747
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 42035315 ~ 42037842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2267975
AAAGATGTCACCTGCAACCATTAAGTCTATACCTACCGGATTTAATGTGTTACATTGGTCTATGGGATTCTTGTAATCAGTCTTCAGTTCATCAAATGCGATGatATGCCAAATAGCGAAGAAAATGAGAGCGGCCGTAAGCAATAGCGCAAGCATGTAACAAAAGGCCGCGAATGTGAACGCCATGTTTGTGTTGCTTTGCTGGCTGATATCTATAACCACAGAGAACTGTCACCCGTTGCCTTCTAGAGGGAAGCGAGAAACTACAGAACGCAGACAAGGGTGGAAAAAAAGGatgctgcgttcaaaacaactgggaactcgggcaTCTCTGACCTCAGTCGTTCCAAGACAACTGGGTACTCGGGAAGAAACGAGCTCCAACGGGAGGGGGGGGATAtttttttgaacg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2267975 True 412 lncRNA 0.46 2 42035315 42037842
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498275 sos2 coding upstream 15162 41945499 ~ 42020153 (+)
LOC110504274 LOC106611444 coding upstream 97536 41781271 ~ 41937779 (+)
LOC110505959 LOC106611457 coding upstream 277921 41740173 ~ 41757394 (+)
LOC110505960 LOC106611458 coding upstream 298187 41677344 ~ 41737128 (+)
LOC110505964 LOC106611459 coding upstream 369253 41636156 ~ 41666062 (+)
LOC110505968 LOC106591812 coding downstream 16276 42054118 ~ 42059358 (+)
LOC110505969 LOC106591813 coding downstream 21853 42059695 ~ 42063783 (+)
LOC110505970 LOC106611462 coding downstream 42751 42080593 ~ 42092048 (+)
LOC110505971 LOC106611464 coding downstream 57235 42095077 ~ 42101228 (+)
LOC110505972 pacs2 coding downstream 69709 42107551 ~ 42226673 (+)
G1983715 NA non-coding upstream 12788 42021408 ~ 42022527 (+)
G1983737 NA non-coding upstream 64159 41970588 ~ 41971156 (+)
G1983735 NA non-coding upstream 67247 41967776 ~ 41968068 (+)
G1983726 NA non-coding upstream 86835 41948117 ~ 41948480 (+)
G1983709 NA non-coding upstream 90842 41944262 ~ 41944473 (+)
G1983761 NA non-coding downstream 35493 42073335 ~ 42073799 (+)
G1983764 NA non-coding downstream 37977 42075819 ~ 42076164 (+)
G1983792 NA non-coding downstream 85939 42123781 ~ 42124291 (+)
G1983806 NA non-coding downstream 107028 42144870 ~ 42148110 (+)
G1983499 NA other upstream 585975 41448402 ~ 41449340 (+)
LOC110504259 LOC106603281 other upstream 684600 41297432 ~ 41350749 (+)
G1983387 NA other upstream 818563 41215475 ~ 41216752 (+)
G1983277 NA other upstream 987413 41047551 ~ 41047902 (+)
G1983721 NA other downstream 25183 42063025 ~ 42103896 (+)
G1983777 NA other downstream 194398 42232240 ~ 42232904 (+)
G1983836 NA other downstream 224385 42262227 ~ 42262714 (+)
cn112 cn112 other downstream 381318 42419107 ~ 42454007 (+)
LOC110505989 NA other downstream 685133 42722700 ~ 42728639 (+)

Expression

G1983747 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

G1983747 Expression in each Bioproject

Bar chart with 12 bars.
G1983747 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006151 gmfb coding NC_007124.7 CM002897.2 36585399 ~ 36606941 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_05131253_05139664 CNIH1, MGC85215, CNIH1.S coding CI01000012 null 5131030 ~ 5139675 (-)