Gene
RNA
| Item | Value |
|---|---|
| gene id | G1985535 |
| gene name | trip11 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 42854474 ~ 42855761 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| trip11 | Predicted to enable small GTPase binding activity. Predicted to be involved in Golgi organization and endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be active in Golgi apparatus. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hypochord; and nervous system. Human ortholog(s) of this gene implicated in achondrogenesis type IA. Orthologous to human TRIP11 (thyroid hormone receptor interactor 11). |
| description |
|---|
| thyroid receptor-interacting protein 11-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2270302 | False | 1260 | lncRNA | 0.48 | 2 | 42854474 | 42855761 |
| TU2270303 | False | 1176 | lncRNA | 0.48 | 2 | 42854474 | 42855761 |
| TU2270304 | False | 1148 | lncRNA | 0.48 | 2 | 42854474 | 42855761 |
| TU2270306 | True | 1232 | lncRNA | 0.48 | 2 | 42854474 | 42855761 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944233 | NA | coding | downstream | 105520 | 42747711 ~ 42748954 (-) |
| oip5 | oip5 | coding | downstream | 115318 | 42732055 ~ 42739156 (-) |
| LOC110505983 | LOC106611415 | coding | downstream | 187715 | 42660899 ~ 42666759 (-) |
| LOC118944274 | NA | coding | downstream | 810412 | 42039468 ~ 42044062 (-) |
| LOC110505967 | LOC106611446 | coding | downstream | 816759 | 42026027 ~ 42037715 (-) |
| LOC110506003 | LOC106611488 | coding | upstream | 186343 | 43042104 ~ 43059549 (-) |
| arg2 | LOC106611485 | coding | upstream | 236542 | 43082185 ~ 43109946 (-) |
| LOC110519337 | NA | coding | upstream | 315658 | 43171419 ~ 43221553 (-) |
| LOC110504340 | NA | coding | upstream | 369891 | 43225652 ~ 43235886 (-) |
| LOC118944275 | LOC106591229 | coding | upstream | 460791 | 43316552 ~ 43317479 (-) |
| G1985565 | NA | non-coding | downstream | 8958 | 42845071 ~ 42845516 (-) |
| G1985539 | NA | non-coding | downstream | 46307 | 42807438 ~ 42808167 (-) |
| G1985478 | NA | non-coding | downstream | 63220 | 42790486 ~ 42791254 (-) |
| G1985521 | NA | non-coding | downstream | 81577 | 42772328 ~ 42772897 (-) |
| G1985481 | NA | non-coding | downstream | 87636 | 42766244 ~ 42766838 (-) |
| G1985568 | NA | non-coding | upstream | 3905 | 42859666 ~ 42860264 (-) |
| G1985573 | LOC106611472 | non-coding | upstream | 14183 | 42869944 ~ 42870878 (-) |
| G1985575 | NA | non-coding | upstream | 18848 | 42874609 ~ 42875000 (-) |
| G1985578 | NA | non-coding | upstream | 22716 | 42878477 ~ 42879128 (-) |
| G1985582 | NA | non-coding | upstream | 29133 | 42884894 ~ 42885125 (-) |
| G1984232 | NA | other | downstream | 584115 | 42267939 ~ 42270359 (-) |
| G1983984 | NA | other | downstream | 1115408 | 41737575 ~ 41739066 (-) |
| G1983374 | NA | other | downstream | 1657387 | 41189968 ~ 41197087 (-) |
| LOC110504262 | ect2l | other | downstream | 1910121 | 40917719 ~ 40944573 (-) |
| G1983003 | NA | other | downstream | 2295485 | 40557298 ~ 40558989 (-) |
| G1985719 | NA | other | upstream | 418426 | 43274187 ~ 43274655 (-) |
| G1985771 | NA | other | upstream | 535635 | 43391396 ~ 43395781 (-) |
| G1985986 | NA | other | upstream | 1217781 | 44073542 ~ 44076910 (-) |
| G1985988 | NA | other | upstream | 1349256 | 44205017 ~ 44205705 (-) |
| G1986600 | NA | other | upstream | 2582259 | 45438020 ~ 45438668 (-) |
