Gene
RNA
| Item | Value |
|---|---|
| gene id | G1984581 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 42964604 ~ 42975274 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: uncharacterized protein LOC106608344 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2268998 | False | 436 | lncRNA | 0.50 | 3 | 42964604 | 42974160 |
| TU2268994 | False | 998 | TUCP | 0.50 | 3 | 42967416 | 42975274 |
| TU2268996 | True | 998 | TUCP | 0.50 | 3 | 42967416 | 42975274 |
42,952,000
42,954,000
42,956,000
42,958,000
42,960,000
42,962,000
42,964,000
42,966,000
42,968,000
42,970,000
42,972,000
42,974,000
42,976,000
NC_048589.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504345 | LOC106611472 | coding | upstream | 76460 | 42868981 ~ 42888144 (+) |
| trip11 | trip11 | coding | upstream | 109335 | 42797481 ~ 42855269 (+) |
| golga5 | golga5 | coding | upstream | 174633 | 42768443 ~ 42789971 (+) |
| LOC110504284 | LOC106611474 | coding | upstream | 197254 | 42750509 ~ 42767350 (+) |
| LOC110505990 | LOC106611473 | coding | upstream | 217539 | 42739235 ~ 42747065 (+) |
| vti1b | vti1b | coding | downstream | 85848 | 43060008 ~ 43073929 (+) |
| LOC110506001 | rbm25 | coding | downstream | 136452 | 43110612 ~ 43152565 (+) |
| LOC110505947 | LOC106591369 | coding | downstream | 401934 | 43376094 ~ 43395316 (+) |
| plekhd1 | plekhd1 | coding | downstream | 436795 | 43410955 ~ 43436311 (+) |
| LOC118944278 | LOC106591229 | coding | downstream | 495535 | 43469695 ~ 43470614 (+) |
| G1984580 | NA | non-coding | upstream | 3503 | 42960784 ~ 42961101 (+) |
| G1984578 | NA | non-coding | upstream | 5049 | 42953625 ~ 42959555 (+) |
| G1984577 | NA | non-coding | upstream | 18068 | 42946279 ~ 42946536 (+) |
| G1984575 | NA | non-coding | upstream | 26435 | 42937466 ~ 42938169 (+) |
| G1984569 | NA | non-coding | upstream | 54526 | 42908897 ~ 42910078 (+) |
| G1984582 | NA | non-coding | downstream | 4174 | 42978334 ~ 42978665 (+) |
| G1984583 | NA | non-coding | downstream | 4923 | 42979083 ~ 42979285 (+) |
| G1984586 | NA | non-coding | downstream | 8614 | 42982774 ~ 42983480 (+) |
| G1984592 | NA | non-coding | downstream | 43325 | 43017485 ~ 43018313 (+) |
| G1984596 | NA | non-coding | downstream | 59452 | 43033612 ~ 43034355 (+) |
| LOC110505989 | NA | other | upstream | 236655 | 42722700 ~ 42728639 (+) |
| cn112 | cn112 | other | upstream | 510781 | 42419107 ~ 42454007 (+) |
| G1983836 | NA | other | upstream | 701890 | 42262227 ~ 42262714 (+) |
| G1983777 | NA | other | upstream | 731700 | 42232240 ~ 42232904 (+) |
| G1983721 | NA | other | upstream | 860708 | 42063025 ~ 42103896 (+) |
| G1984431 | NA | other | downstream | 68521 | 43042681 ~ 43043318 (+) |
| G1984764 | NA | other | downstream | 497396 | 43471556 ~ 43472009 (+) |
| G1984797 | NA | other | downstream | 599883 | 43574043 ~ 43574613 (+) |
| G1984803 | NA | other | downstream | 639388 | 43613548 ~ 43635501 (+) |
| G1984807 | NA | other | downstream | 653832 | 43627992 ~ 43628808 (+) |
