LOC118944522


Basic Information

Item Value
gene id LOC118944522
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 1841033 ~ 1843978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964351.1
attttgcagattaacactggagtgataaattatcagatggtcatgtgcaggtagagatattggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaaaataaACAGGATTTGTCTAGGACACCCAATGGACAGACGGGACAGGAGTGAAATGACGTCCTGAGTTAACTACACTCCAGGACTTGAACACTTCAGGCATTGAGGACAAACAGGTGACAGGGATGAAGACTGTGTTGAGCTCGTGTGGTTCTGTGACGCTTCTCAAGAAGCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATTACACATCCTGATCCTCCCTTCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATTACACATCCTGATCCTCCCTTCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGGACATAGACTCTACCCTACTGAACACagaccatcactactgacattAAACATGTTCAGGACCATGTTCAGTAGactcaaatgggacaaacacattTACACGTGGGAGGTACTACCAGAATTGAGCAAATCCGAAACGCTGAAAAATTTATTTTTGTTGATTCTTTGTATTTTGTCTCATTGGTTGTTTTTCCTCCTTGTTTAGGAGCTGCTACAGTGTTTCCCAGACCCCAAGTCCCCTCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAATGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAGACCCCAAGTCCCCCCCTTTACCAATGTTTCCCAAGTCCCCCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCTCCTTTACCAGTGTTTCCCAGCCCCCTGTCCTGTCCCCCCCCTTATGTTTCCCAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGTTTCCCAGACCCCTGTCCTGTCCCCCCCCTTATGTTTCCCAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGTTTCCCAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGCTTCCCATACTTGGAGCTTTGGGTTTgtcccaactggcaccctattccctatatagtgcactacttttgaccagagccataagGAGTGCATTATTTAGGGAATAGGCAGCTAGTTGGAACACACAGCCTTTAATACAAACTTCATTGGTGAAGCAATGGGTCTGTCAACCAACAGGAAGCTTGTAGTGACAGTCTTTTTTACAACTGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCAACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGTCCTCCTGACCTCCCTCATGATGAGGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCGTCTCTCTGCTGATTTAGTTGTCTTCACAACAGAGCCATTGTGACACAGGGTATTGATGATCATCAACCACCCGTTTGTTTTATGAGATATGCGTTACCCTAATCAATACAATCATCAATCATGCAAATATCCGCCATTGATTAATGCTGTATGTTTTAAACTGTATCCATTTGGTTTATGATTGTAGATATAATTAGTTTTAAAATAAAGAGCTTTAGTCTGTGAA
>XM_036964352.1
attttgcagattaacactggagtgataaattatcagatggtcatgtgcaggtagagatattggtgtgcaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtaaaaataaACAGGATTTGTCTAGGACACCCAATGGACAGACGGGACAGGAGTGAAATGACGTCCTGAGTTAACTACACTCCAGGACTTGAACACTTCAGGCATTGAGGACAAACAGGTGACAGGGATGAAGACTGTGTTGAGCTCGTGTGGTTCTGTGACGCTTCTCAAGAAGCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATTACACATCCTGATCCTCCCTTCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATTACACATCCTGATCCTCCCTTCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGTCACAACCCAAGTGTCCTGACATCATTAAACATCCTGATCCTCCCTGCCTCTGGCCACAACCCAAGTGTCCTGACATCATTAAACATCCTGGACATAGACTCTACCCTACTGAACACagaccatcactactgacattAAACATGTTCAGGACCATGTTCAGTAGactcaaatgggacaaacacattTACACGTGGGAGGTACTACCAGAATTGAGCAAATCCGAAACGCTGAAAAATTTATTTTTGTTGATTCTTTGTATTTTGTCTCATTGGTTGTTTTTCCTCCTTGTTTAGGAGCTGCTACAGTGTTTCCCAGACCCCAAGTCCCCTCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAATGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAGACCCCAAGTCCCCCCCTTTACCAATGTTTCCCAAGTCCCCCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAATGTTTCCCAAGTCCTCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCCCCTTTACCAGTGTTTCCCAAGTCCCCTCCTTTACCAGTGTTTCCCAGCCCCCTGTCCTGTCCCCCCCCTTATGTTTCCCAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGTTTCCCAGACCCCTGTCCTGTCCCCCCCCTTATGTTTCCCAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGTTTCCCAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGCTTCCCATACTTGGAGCTTTGGGTTTgtcccaactggcaccctattccctatatagtgcactacttttgaccagagccataagGAGTGCATTATTTAGGGAATAGGCAGCTAGTTGGAACACACAGCCTTTAATACAAACTTCATTGGTGAAGCAATGGGTCTGTCAACCAACAGGAAGCTTGTAGTGACAGTCTTTTTTACAACTGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCAACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGTCCTCCTGACCTCCCTCATGATGAGGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCGTCTCTCTGCTGATTTAGTTGTCTTCACAACAGAGCCATTGTGACACAGGGTATTGATGATCATCAACCACCCGTTTGTTTTATGAGATATGCGTTACCCTAATCAATACAATCATCAATCATGCAAATATCCGCCATTGATTAATGCTGTATGTTTTAAACTGTATCCATTTGGTTTATGATTGTAGATATAATTAGTTTTAAAATAAAGAGCTTTAGTCTGTGAA
>TU2275827
CAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGCTTCCCATACTTGGAGCTTTGGGTTTgtcccaactggcaccctattccctatatagtgcactacttttgaccagagccataagGAGTGCATTATTTAGGGAATAGGCAGCTAGTTGGAACACACAGCCTTTAATACAAACTTCATTGGTGAAGCAATGGGTCTGTCAACCAACAGGAAGCTTGTAGTGACAGTCTTTTTTACAACTGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCGTCTCTCTGCTGATTTAGTTGTCTTCACAACAGAGCCATTGTGACACAGGGTATTGATGATCATCAACCACCCGTTTGTTTTATGAGATATGCGTTACCCTAATCAATACAATCATCAATCATGCAAATATCCGCCATTGATTAATGCTGTATGTTTTAAACTGTATCCATTTGGTTTATGATTGTAGATATAATTAGTTTTAAAATAAAGAGCTTT
>TU2275828
CAGACCCCAAGTCCTGTCCCCCCCTTTACCAATGCTTCCCATACTTGGAGCTTTGGGTTTgtcccaactggcaccctattccctatatagtgcactacttttgaccagagccataagGAGTGCATTATTTAGGGAATAGGCAGCTAGTTGGAACACACAGCCTTTAATACAAACTTCATTGGTGAAGCAATGGGTCTGTCAACCAACAGGAAGCTTGTAGTGACAGTCTTTTTTACAACTGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCAACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCCCTCATGATGAAGGCTAATTCAGTCCACCATTTTGTTCCCCCTCAGCCCTCCTGACCTCGTCTCTCTGCTGATTTAGTTGTCTTCACAACAGAGCCATTGTGACACAGGGTATTGATGATCATCAACCACCCGTTTGTTTTATGAGATATGCGTTACCCTAATCAATACAATCATCAATCATGCAAATATCCGCCATTGATTAATGCTGTATGTTTTAAACTGTATCCATTTGGTTTATGATTGTAGATATAATTAGTTTTAAAATAAAGAGCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964351.1 False 2892 mRNA 0.49 2 1841033 1843978
XM_036964352.1 False 2892 mRNA 0.49 2 1841033 1843978
TU2275827 False 687 lncRNA 0.44 3 1841043 1841906
TU2275828 True 746 lncRNA 0.45 2 1841043 1841906
Loading

Neighbor

gene id symbol gene type direction distance location
terfa LOC106588121 coding downstream 124 1811256 ~ 1840909 (-)
LOC110518952 LOC106588066 coding downstream 38129 1796440 ~ 1802904 (-)
LOC110516400 LOC106588117 coding downstream 56187 1723576 ~ 1784846 (-)
LOC118944521 NA coding downstream 64560 1775849 ~ 1776473 (-)
LOC110516758 LOC106588060 coding downstream 258125 1508423 ~ 1582908 (-)
LOC110520677 LOC105028853 coding upstream 5318 1849296 ~ 1882956 (-)
LOC110511392 LOC106594384 coding upstream 123837 1967815 ~ 1972265 (-)
LOC110510393 LOC106592435 coding upstream 131974 1975952 ~ 2003634 (-)
LOC118944440 NA coding upstream 243388 2086953 ~ 2091749 (-)
LOC110518214 LOC106591800 coding upstream 248286 2092264 ~ 2252755 (-)
G1989747 NA non-coding downstream 6161 1834488 ~ 1834872 (-)
G1989743 NA non-coding downstream 22107 1818716 ~ 1818926 (-)
G1989727 NA non-coding downstream 32004 1808105 ~ 1809029 (-)
G1989717 NA non-coding downstream 122587 1695992 ~ 1718446 (-)
G1989757 NA non-coding upstream 25776 1869754 ~ 1870568 (-)
G1989758 NA non-coding upstream 26955 1870933 ~ 1871294 (-)
G1989768 NA non-coding upstream 54399 1898377 ~ 1899371 (-)
G1989791 NA non-coding upstream 156001 1999979 ~ 2000533 (-)
G1989799 NA non-coding upstream 177111 2021089 ~ 2021416 (-)
G1989684 NA other downstream 236684 1599317 ~ 1604349 (-)
G1989681 NA other downstream 246017 1593497 ~ 1595016 (-)
LOC110516588 LOC106588078 other downstream 1209043 620743 ~ 756868 (-)
LOC110514501 lrrc28 other downstream 1238332 566552 ~ 610773 (-)
G1989922 NA other upstream 460860 2304838 ~ 2305780 (-)
G1989939 NA other upstream 554295 2398273 ~ 2399734 (-)
LOC118944543 NA other upstream 634264 2478242 ~ 2486594 (-)
LOC110519438 plekhg4 other upstream 904503 2589463 ~ 2786486 (-)
G1989721 NA non-coding downstream 131052 1707959 ~ 1709991 (-)

Expression

LOC118944522 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC118944522 Expression in each Bioproject

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LOC118944522 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network