LOC110519438 (plekhg4)


Basic Information

Item Value
gene id LOC110519438
gene name plekhg4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 2589463 ~ 2786486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964548.1
GGTTTGGAAGGAGGTCGACCAGCAGAGAGACTCATTCACTGAGGAATACTGAGGACAATGATCCCAGGATACACTACTACAGAGGACATACTGCATACACTATGgacTCTGAATCTCTGGACAGTTGTATCCAGAGCACCCTCTCAGCCCTCTACCCTCCGTTTGATGCCACAGCCTCCACGGTGCTGTGTCAGGTATTTGATGTGGTGGAGACCAGCTACAGAGGAGACGGATTAAGATACCTTATAGACTTCCTGGTCCCTGCCAAACACATCCTGCAGACCATCCAGCAACATGCCTGTTTCCCGTACTGCGGCCTGTTATTCCGGCACCAGGGCTGGCCTCTGTGTCTCCACGACAAGGTGATCATCCAGCTCTCTCCTCTGGACCCACGTGTCCTCCGCCCCGGGGACTTCTACCTACAGGTGGCAtcgccctctgtctcccccagcTCCTCCTCCACCAACACCCCCAGcCCACCCTGTCTCATCCTGCGCTGTCTGGCCCCCAGTGGGCAGCATGTAGAGGAGGTAAAGTTGACAGAGCTAGCCTACACCTCCCTGTTCACCATGGCCTGGCTCCACTCAGTCAACAGGGAACGGAGTGGAGCAGGAACGGAGACAGGGTCTGGGACAGGGTCGGAGCCAGGGTCTGGGCCAGGGTCTGGGACAGGGTCGGGGACAGGGTCGGGGAGGACCCTGTCCCACTGCCTCCTTTCTGCAGAGAACAACATTTTCAGAGTACCCTGGGAGGATGTAGTACACCCTCAGTTCATTAACAGACCCACGGCTATGGTGGCTGCACCAATCAGAGTCCCTACCAAGGGAGAAGGGGACGGGGGGAGGGAACAGGACGTCTTCAAGCCTTCGGAGAGGGCCAGATGCATTTTGATTGACACATCCAAGGCCCAATGTGGAGAGAGTACGGAGGTGAAGCTCCTCCCACGGTTGAGACAGCCTATCGAGACCAGGGACGATGGGAACGGTTTTGCAGCAGAAGAGGACTCGGACGCTGAGGGAGAGTATGTTGAACTGGAAGAGATCTCTCTACCGCGCTTCTCTCCTCAGAAAGGATCCTTAACACAGTCTGTTAGTCTGAACTACAGGAACCTGCATAAACCCTGGACTACAGCCCGACACCCCCCCAAAGCAACCCCCTCCCAGCCCTTTCATGCCCCGGTGAAAAGCAGCACTTTCTCCCAGTCCATGGTGTGTTCCAGACTCATCGAGGAATACCTGAACAACGACGTGTTTTCCCCTGTCATCCTCACCCCAACGGCCCCCACCTCCGCTACGGACCCCACCTCCCCTACGGACCCCACCTCCCCAACGGCCCCCATGGGCCCCACCTCCCCTACGGCCCCCATGGGCCCCACCTCCCCTACGGCCCCCACGTCCCCAACGGCCCCCACCTCCCCCATGGTCCCCACCTCCCCAACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCccacctcccccacctcccccatTGTCCCCACCTCCCCTATGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCCATGGCCCCCATGGGCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCCCCATGGGCCCCATGGCCCCCACCTCCCCTACGGCCCCCACCTCCCCTACGGCCAGAGAGGGGGTCAGCGGTGAGGGGACAGCGTCAGACCGTACAGAAGGTAACGCTGCTCGTCTCCAgaggctaacacaacgtgtctcTGAGCGTGTGTCTGAGTCTCACTGGTCAGTGTGTGACGGCACAGCCCTATCAGTGGTTTCTGACCCCCAGACTGACAGCGAGGAGGTTTTAACCCAGTCACACAGTATAGTGGAGAGGGAAGAGTCTCTCAGTCACCCTCAGACTGACAGTGAGGAGGTTTTAACCCAGTCACACAGTATAGTGGAGAGGGAAGAGTCTCTCAGTCACCCTCAGACTGACAGCGAGGAAGTTTTAATCCAGTCACACAGTATAGTGGAGAGGGAAGAGTCTCTCAGTCACCCTCAGACTGACAGTGAGGAGGTTTTAACCCAGTCACACAGTATAGTGGAGAGGGAAGAGTCTCTCAGTCACCctcagactgacagagaggaagTTTTAACGCTGTCACACAGTATAGTGGAGAGGGAAGAGTCTCTCAGTCACCCTCAGACTGACAGCGAGGAGGTTTTAACCCAGTCACATAGTATAGTGGAGAGGGAAGAGTCTCTCAGTCGGGAAGACGGCATTGTTCacaaaaccaggacagagacagaggagagggatcagGGTTCAGaaaccaggacagagacagaggagagggatcagGGTTCAGaaaccaggacagagacaggggaaaggAGGGATAGGGGTTCAGaaaccaggacagagacagaggagaggagggatagtggttcagaaaccaggacagagacagagacaggggagaggggtagCCATGTTGGCATCTTACAGGTGGTTGACACCAGTGAGACAGTCTCTCACCATGATGACCCTGAGGTCTCCACCGGCCAATCAGACACTCCCCAAGGAGAGGACCAGACACTGAACACTCTGACCGAGACTCTCATACACTTAGCCCCCACTCCCACTGACCACCAAACACCAACGCACTACACACCTTCCACTGAATCAGAGACCGAGagaccggaggaggaggagatggagcaagaggaagaggaagagaaccACTCAGATACTGACCCCCAAGAGCAAGAAGAGACAGgCCCCATTCAGCCAGAGGAACCTGTGTTAAAATCCTGTTCCGTGGACAAGCCATCCAATGAAACTAACCACAGAGACCCAGAACTACAACGGACCCCAGCAGTGATGTTTCACGACCCTCCACCTCCCTCGCCCCTGCTCCACCAGCCCCCAGCCCAGTTAACCCAGTCCCCAGCCCAGTTAACCCAGTCCCCAGCCCAGTTAACCCAGTCCCCAGCCCAGTTAACCAGGTCCTACTCCCAGTCCAGCCAGTGCTCCCAGTCTTCAGTCTTTCCTAAGTCCCAGACACTGACAGAGGCCCACAACATCAATGCTGCTGTCCTCAGTTCTGGGGTGCTCTGTCTGCCTGGAACAAGAGATAGGGGAGGTCGAGCCCTGGTGACCGTGACCACGAGGAACACCGGCTGGTTGAACCCCAGCTGTGACTGTGGAGAACTGGTCAGAATCCTGGTCTACTACTACACAATGCTCAgGAAGGAGGTGCGTTCCCTAGGGTTGACAGTCGTGGTGGACTCCCGGCGGTGCTCCCCTGTCCCCGCTCTGTTCAGCGCCTTCAACATACTTCAGGATGCTTTGCCCGGCTGTATCTACACTGTCCTGTTACTGGCTGATAGAGACCTGGTTCTACGCCTGGAGAAACCCTCAGCCGTACAGGTGGAGTTGTTGACCTCTCTGAAGTCTCTCTATAAACATGTGGAGGTGTCTCAGCTACCTACTGAGTTTGATGGATCCTTCCCCTTTTCACACAGCGCCTGGGTCTGCTTCAGAACGAGAGTGGAACAGCTAACCAGTCACTGTGAGGACGCTGTCAACCTTCTGCAGAGTACCATCACAGGTCTGGAGTCTACTGTCCTGCCAGCTACCGCTGAGgagGCCCAGGTGTTACTTGCCAGGTACAGGGGTGTGATGTGCACCGTCCTGGAGGACAGCCGATTGGCTAGATTACAGCTGGAGGGCGGAGCCGTCCTGTCCCGCCTCCGTAAAGAGGAAACCAGTGTCAGCCTCAGAGACGACTACAGAGATGCCGTAGAGGTTGTGGCTGGTCTGTACGATCAGGTGGATGAGCTGGTTCACAAGCTGGTGATGCTGTCCAACCAACGCACTCAGGAACTGGACTTTATCATGGAGTTCAAGAGTCTGGAGCAGGGATTCAAGGAGgtgagtgacTGGATTGAGGAGGTTGGAGAGAGTCGTCTGAGAACGCTCGGAGAGCTGGAGGATTCTCTGGAGCAGCTGCACAGGAAACAGACCCTCTTCAGAGACTTCTACACTGCTGCCTACgaacactgtaagggagGCGAGGCGCTGCTGAAACGTCTAGAACGTTGGGAAGACTTGTCGTCAGCCGAGCTGCAGGTGTACGAGGTCAAAGTTCAATCCTTCTGGGTCCACCTGCACGACTTCTCCCAGAGGGTAGAAGACACCAAGACCAACATCGACAAGACCGTACGTCTCTACGAGTTTTTCGATAAGgcgTATGAGTGGGCGTTGGAGGGGATGCGTCACCTGGCCAGCATCAGCATGGAGGACTGCACGGTGCCCGACAAGAGCCAGGGGGTGATCAGCTGTCTGGAGGGGTACCGCCGGCAGCACCCCCCGATCCCCGACCCCCGCTTCCAGGAGATGAAGGAGCTGGCTGGGGAGATGAAGAGCGAGCAGGGCCTCAAACAGTGGAAGTTCGCCTGGTCCAAGTGCCAGGAGACCAAGCAGATGTTTGAGAAGAAGCTGGAGGCCGCTCTGAGGACGAGGCGAGCCCTGCCCACGGGAGAGTCACCCGGGTCGGGTACAGCGGGTGCAGGGAAGGACGGCGGGGTAGGGGACGCCACCCCCAGACGTTATTCTGACGTTAACAACGACGTGGGACAGGAGAGGAGCCGCAGCGTGTCACACGCCTGTAGAAAGGCCTTTAGTGGGGTgtggggggtcagagagaggctgTCCTCTACCTCCAGCGCTGCCTCAGCTCAGTCGGCCTGCAGCCACAGAGAGGAGACACCCCTAACCTCCTCTCCCTACGGTCTGGTGCACAGgctccccctcacccccctctccacccAGCTCCTCACCCGTAGCACCTCCTCCTCCGAGGAGTCGTCCCACGGGGTTCGTATTGAAGCGCAGGGCCGtagctcctcctgttcctcctccccctccctgacCCCCCTGGAGCCGAGCTCCGCCCCTAACCCTGCTCGCCGGCCCCCGCTCCGCAAGACCCAGAGCTTCGACTGCCAGAGCCCCGCCCCCGCCTCCCCTGACTCCTCCCGCTATGGGACCTGTCAGCGTACGCTGAGCGAGCCGGCCCGGCGCGGCCACACTGGGGTGTTTATTAAAGGCCTGGAGGTCAGTAGTAGGGAGGTGGCTGAGCGACCCTACTCCCCCAGAATGACGCCTCCTGGCTGGGCAGCGGGAGAGGCACTGAGGACCCCCTCCATCAGCACTGCCAGTAGTCCTGTACCAGAGACCCGCGCCAAGGGCAGtaAGCTGCGTCACATCGTGGATGAGATGGTGACCACGGAGAGGGAGTACGTGCGTTCCCTCCGGTACATCATCGAGCACTACTTCcccgagatggagagaggagacctCCCGCAGGACCTCAGGGGAAAACGCAGCGTCATCTTTGGGAACCTGGAGAAGCTTATGGACTTCCACAGCCAGTACTTCCTCAAGGAGTTGGAGAGCTGCTGCAACCACCCTCTGAGGGTGTCACACTGCTTCCTACGACACCAAGACGCGTTCGGCCTGTACGCTCTGTACAGTAAGAACAAGCCTCGGTCTGATACGCTGTTGGCCAGCCACGGAAACAGCTTCTTCAGGAACAAGCAGCTGAAGCTGGGAGATAAGATGGACCTGGCCTCCTACCTGTTAAAGCCCATCCAGAGGATGGCTAAATACGCTCTCCTCCTCAAAGACCTGATCAAGGAGGTGAGCGAGGCGCAGGAGACAGAGCTGGGCTACCTCCGAGCCGCCGCGGAGATGGTCAAGTTCCAGCTGCGTCACGGCAACGACCTGCTCGCCATGGACGCCATTCGAGACTGTGACGTGAACCTGAAGGAGCAGGGTCAACTGGTCAGACAGGATGAGTTCTGGATCTGGTACGGCAGGAAGAAGTGTCAGCGCCATGTCTTCCTGTTTGAAGACCTGGTGCTGTTCAGTAAACCCAAACGCATCGAAGGAGGACTGGACGTTTACATCTACAAACACTCCTTTAAGaCGGCAGACGTGGGGATGACTGAGACATCTGGGGACAACAGTCTTCGTTTCGAGGTGTGGTTCAGACGCAGGAGCAGTAAGAACCAGACATATGTCCTGCAGGCCTCCAACACAGACATCAAACACGCCTGGACCACCAACATCGCACGTATCCTCTGGCAGCAGGCTACCCGGAATAAAgAGATCCGTAATCAGGAGATGGTTTCCATGGGAGTGGGTAACAAGCCGTTCCTGGACATTACACCCAGTGATGCTGCGATCAACGACAGGGCTATAGACTACATCATGAAGGGACGAGGTGCCAGAACTCGAGCCTCCATTGCCGTGTCCCTGTTCGACCACTCCAACCCTTTCAAGCGTACAGCTTCGAGTAACGGGGGGTCTGGCGGCGGGGCCCCTGCTGCGTCTGGCTCCTGCACTCTCCTGGGGCCCCTCAACCTGCACATGTACAGCAGCCACAGCCAGGCCCTGATGCCCGGGGGAGAGAGGCCCTTCATCAGCCCGTGTATGGAGGAGGACGAGATGGAGCACGAGACCAGCAGCCAGCCATCCATgactaCAGAGAGCTCAGGTTCATCGTCCCACTGTCTGTCCGGCAGCGGCTCAAGTGGTTCAGACAGTGGCTGTGTGTCCAGCCACCTCCCTGAGGCCAGTTTATCTGAGGATCCCTCGTTCCCCTGCCGTCCCCGGTCCGACGCCGTGACCTCCCCCAGCCTCCCCAAAGACAAGCCGCGCTACAACAACAGCCAGTACATTTCAGCCAATGTAGCTCAGACCATAGGCCCTTCCACTATAGTGTGATTCCTGACTGGGACCCTGCTTGGAGTCTGATATCCAGAAAGACACTATTACCACGCCAAGGAAGACAGGCGAGACTCTCATCTCACATGGACGCTGTAAAGACCTGGGActgtttt
>TU2276687
CAGCGGTTTGGAAGGAGGTCGACCAGCAGAGAGACTCATTCACTGAGGAATACTGAGGACAATGATCCCAGGATACACTACTACAGAGGACATACTGCATACACTATGgacTCTGAATCTCTGGACAGTTGTATCCAGAGCACCCTCTCAGCCCTCTACCCTCCGTTTGATGCCACAGCCTCCACGGTGCTGTGTCAGGTATTTGATGTGGTGGAGACCAGCTACAGAGGAGACGGATTAAGATACCTTATAGACTTCCTGGTCCCTGCCAAACACATCCTGCAGACCATCCAGCAACATGCCTGTTTCCCGTACTGCGGCCTGTTATTCCGGCACCAGGGCtggcctctgtgtctc

Function

symbol description
plekhg4 Predicted to enable guanyl-nucleotide exchange factor activity. Is expressed in several structures, including brain; midbrain neural keel; presumptive diencephalon; segmental plate; and ventricular zone. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 4. Orthologous to human PLEKHG4 (pleckstrin homology and RhoGEF domain containing G4).

NR:

description
rho guanine nucleotide exchange factor 40-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964548.1 False 6916 mRNA 0.58 28 2589463 2786482
TU2276687 True 357 TUCP 0.53 3 2748481 2786486

Neighbor

gene id symbol gene type direction distance location
LOC118944516 NA coding downstream 105071 2483877 ~ 2484392 (-)
LOC118944543 NA coding downstream 106461 2478242 ~ 2486594 (-)
LOC118944544 NA coding downstream 108487 2480774 ~ 2480976 (-)
LOC110518214 LOC106591800 coding downstream 336708 2092264 ~ 2252755 (-)
LOC118944440 NA coding downstream 497714 2086953 ~ 2091749 (-)
LOC118944482 LOC106588022 coding upstream 69611 2856093 ~ 2905683 (-)
LOC118944483 NA coding upstream 84852 2871334 ~ 2873840 (-)
LOC118944401 LOC106588129 coding upstream 172481 2958963 ~ 3117243 (-)
LOC118944414 NA coding upstream 398457 3183940 ~ 3186858 (-)
LOC110506223 LOC106588037 coding upstream 690676 3477158 ~ 3492750 (-)
G1990231 NA non-coding downstream 10806 2578358 ~ 2578657 (-)
G1989987 NA non-coding downstream 25580 2563266 ~ 2563883 (-)
G1989985 NA non-coding downstream 41889 2530711 ~ 2547574 (-)
G1989984 NA non-coding downstream 42755 2530434 ~ 2546708 (-)
G1989980 NA non-coding downstream 69893 2519253 ~ 2519570 (-)
G1990308 NA non-coding upstream 6082 2792564 ~ 2794948 (-)
G1990312 NA non-coding upstream 18633 2805115 ~ 2807804 (-)
G1990314 NA non-coding upstream 23624 2810106 ~ 2811121 (-)
G1990320 NA non-coding upstream 43542 2830024 ~ 2830606 (-)
G1990297 NA non-coding upstream 65174 2851656 ~ 2853030 (-)
G1989939 NA other downstream 189729 2398273 ~ 2399734 (-)
G1989922 NA other downstream 283683 2304838 ~ 2305780 (-)
terfa LOC106588121 other downstream 753148 1811256 ~ 1840909 (-)
G1990296 NA other upstream 168928 2955410 ~ 2956519 (-)
G1990495 LOC106562810 other upstream 500685 3287167 ~ 3288498 (-)
G1990760 LOC100379111 other upstream 716469 3502951 ~ 3515660 (-)
G1990281 NA non-coding downstream 21407 2726875 ~ 2727074 (-)
G1990278 NA non-coding downstream 30584 2716488 ~ 2717897 (-)
G1990277 NA non-coding downstream 33941 2714199 ~ 2714540 (-)
G1990276 NA non-coding downstream 44282 2703918 ~ 2704199 (-)
G1990275 NA non-coding downstream 48006 2699931 ~ 2700475 (-)

Expression


Co-expression Network