LOC118944482 (LOC106588022)


Basic Information

Item Value
gene id LOC118944482
gene name LOC106588022
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 2856093 ~ 2905683 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964029.1
tgtgtctctgtgtgttcagaCCAGAAGGTTCAGGCAGGTCTGATGGAGTTCCTGTTGTTTGGGGCGTTGATCTCTGCGGTGGACCCAGTGGCGGTGCTGGCCGTGTTCGAGGAGGTCCACGTCAACGAGACTCTCTTCATCATCGTCTTCGGAGAGTCCCTGCTCAACGACGCCGTCACCGTGGTGTTGTATAAGGTGTACATGTCCTTCGTGGAGGTGGGCCCTGAGAATGTTCAGACAGCTGACTATTTCAAAGGAGTGGccTCATTCCTCATCGTCAGTATTGGGGGGACCATGGTGGGTCTGATCTTTGCTGCTCTCCTAGCCTTCATCACACGTTTCACCAAGAAGGTCCGCATCATTGAGCCTCTATTGGTCTTCCTCATGGTCTACCTGGCCTACCTCACCGCTGAGCTCTTCTCTCTGTCCGCCATCTTGTCAATGACGTTCTGTGGTATCGGCTGTAACAAGTACGTGGAGGCCAACATATCCCAGAAATCTCGTACCACGGTGAAGTACACGATGAAAACCCTGGCCAGCATCGCCGAAACCATCATCTTCATCTTCCTGGGCATCTCAGCCGTGGACAAATCTAAGTGGGCCTGGGACACAGGACTCATCTCCTGTACGCTCATCTTCATCTTCGTCTTCAGGGCCCTGGGTGTGGTCATGCAGACCTGGGTGTTGAACTGGTTCCGCCTCGTCCCATTGGACAAGATCGACCAGGTGGTGATGTCGTACGGTGGCCTGCGAGGGGCGGTGGCGTTTGCCTTGGTGGTGCTGCTGGACGCAGAACGGGTCCCGGCTAAAGACTACTTCGTGGCCACAACCATCATAGTGGTTTTCTTCACTGTGATGTTCCAGggtcTGACCATCAAGCCTCTAGTGAACTGGCTCAAAGTACCTCGTGCCACCAACCGCAAGCCCACCATCAACGAGGAGATACACGAGCGTGCCTTTGACCATTGTCTGACAGCAGTGGAAGACATCGCTGGACTCAACGGTTACCACCACTGGAGAGACAAGTGGGAGCAGTTTGACAAGAACTACCTGAGCAAGCTGCTGCTGCGGAAGTCTGTGTACCGGAAGAGCGAGCTGTGGGAGGTCTATCAGAAAATCAATATTAGAGACGCCATCAGTGTTATAGACCAgGGTGGCAACGTGCTGACCTCTGCAAGGCTCTCTCTGCCCTCCATGGCCTCCAGGGCATCTTTCCCAGAGGTCACCAACGTCACCAACTACCTGAGAGAGAACGGTAGTGGGGTCTGTCTGGACCTCCAGGTGATTGACAACGTGCCGGGAGCCAAGGTGGAGGAGGAGTCAGAAACGCATCACTTCCTGGCTGGGAACCTGTACAAGCCCAGGAGACGGTACCAGTCCCACTACAGCAGACACTTCATGACAGTGGGGGACCACGAGCGTCAGGACAGAGAGATCTTCCAGAGAAATATGAAGAGCCGCATGGAGACGTTCAAGACCACCCGACACAAACGCCACAGCCACAAGAAGGACCGCAGCCAGAAAAAGCGGAGAGGATCAGACGTTAAAGAACAGGACCTCAACGACAAACCTCGACGGAACGTCAGCTGGCAGGACAAAGATCCTGTGGTGGTGACAGTGGAGTCTGAGGATGAGAAGGGGGAACACTTGGAGCCAGAGAAGGAGGAGGACGTTGGCATCACCTTTGTGGCTCGAAAGGTTCCAGACACGCCCAAAGAACGACCCAAATCTGTCCCGGCTGGTCTGGAGGTGTGTCAGAGCCCCTCCGTGGCCCCGCCCTCCCCCACCTGCAGTGAGAGGAACCTGCCCTGGAAGGGCGGTATCGGAACCCTGCCGGTGTGTGTTTCCATGGAGGCTACTAAAATCATCCCCATAGACCTGCAGCAGGCGTGGAACCAGAGCATCTCCTCCTTAGAGAGCCTGGCCTCTCCGCCGGGCCCCGTAGAGCCCTTACACCCCCGCGTCAGCGCCCTCTCCAGGCTGGGAGGGCAACGTCCTGTCTCATACTCTGGTAGTGGAGTTAGTGGCTCTGGTTTTGGATCCAGAGGGGCTGGGTCAATAGTGGCTCAGGGCATCGCTCGGTTTGAGTTCCctccaggaggagaggagaaggaggaggaagagggagccTTGTCTGATCAGGAGCAGGAGCTGCAGCCCCTCGTGTCATCCTCTGTGAGGCCCCCAGGCCCCCCGCCCCCTCCCCCCCTGGCCCAGGGTCTAGGGCGGAGGAGGAACCCCTGTGTGTACCTGAGGAGCCTGGTCACAGCGCCCCCTCCTGGCAGTGAGCCGCTGGCACGCAGCAGAGGGCCCACTCAGCTTTAATAGCTCCAACCACATCTCTGGTGTTGCCCCGGCGacccagatctaggatcagcttactcaACCAAGTCCCTAACCAATACCTACTAGGGAGAACAACACAAGACTGATTTCAAATCAGCTTTTATGGGCAATCACGTCCCTCACTGCCTCACACACTCAACAACAGAACAGtcacccaaccacacacaccagCTCAGGCCGTCCAACCCCCTCAGCTCTGCTACTTCTCCTTCCAGACGACGAGTCTTCATCTCCTTCAATAACTCTGgatccactgtctctatagaTTCAGAcatacattacaaacacacacacacacacacacacacacaggatattgGACTAGTACAGCGATGATGATATTGAGGAAGTATAGTGAGCATCCCATAatgagcaccctattccctatatagtgcactacttttgaccagggccccaatagggaaaagggtgccatttgggacgaaggcTAAGAGTTTTGATGTGGCAGCTGGTACAGtcacagatagacagacacagtGCATTGTGGTCCAGGGTTGGGGCCGTCCGTCCATGTGGTAAAACAATACCAGTTTCCAGAGAGAGTGTTGTTGATTGATGACCAGATCCTGGTCCCTGATTGGTTCTATCCCTCCCAGGTCCCTGCAGGGGTCGAGGTTCTGCCCTGTCTGTTTCATACACTTGAATATAAGTCAATGTCAAGATGTAAGCCTTATTTGGGAAATATATCTGTCCACAGCCGGACGGCCGCATTACCCAGGCCTTATGGGGTGTGTCCATCTAACATCAAACGCTCCATTCAACCCCCagtactctcctctccctctcctctcctctcctcttcctctcctctcctctcctctcctctcctctcctctcctct

Function

NR:

description
PREDICTED: sodium/hydrogen exchanger 5-like

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015385 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964029.1 True 3208 mRNA 0.55 14 2856093 2905683

Neighbor

gene id symbol gene type direction distance location
LOC110519438 plekhg4 coding downstream 69611 2589463 ~ 2786486 (-)
LOC118944516 NA coding downstream 371701 2483877 ~ 2484392 (-)
LOC118944543 NA coding downstream 373091 2478242 ~ 2486594 (-)
LOC118944544 NA coding downstream 375117 2480774 ~ 2480976 (-)
LOC110518214 LOC106591800 coding downstream 603338 2092264 ~ 2252755 (-)
LOC118944401 LOC106588129 coding upstream 53280 2958963 ~ 3117243 (-)
LOC118944414 NA coding upstream 279256 3183940 ~ 3186858 (-)
LOC110506223 LOC106588037 coding upstream 571475 3477158 ~ 3492750 (-)
LOC110516700 LOC106591035 coding upstream 1168362 4074045 ~ 4158044 (-)
LOC110498670 anx2a coding upstream 1464699 4370382 ~ 4390993 (-)
G1990297 NA non-coding downstream 3063 2851656 ~ 2853030 (-)
G1990320 NA non-coding downstream 25487 2830024 ~ 2830606 (-)
G1990314 NA non-coding downstream 44972 2810106 ~ 2811121 (-)
G1990312 NA non-coding downstream 48289 2805115 ~ 2807804 (-)
G1990308 NA non-coding downstream 61145 2792564 ~ 2794948 (-)
G1990296 NA non-coding upstream 49727 2955410 ~ 2956519 (-)
G1990359 NA non-coding upstream 68060 2973743 ~ 2976907 (-)
G1990364 NA non-coding upstream 75298 2980981 ~ 2982122 (-)
G1990381 NA non-coding upstream 122457 3028140 ~ 3031758 (-)
G1990382 NA non-coding upstream 129248 3034931 ~ 3038921 (-)
G1989939 NA other downstream 456359 2398273 ~ 2399734 (-)
G1989922 NA other downstream 550313 2304838 ~ 2305780 (-)
G1990495 LOC106562810 other upstream 381484 3287167 ~ 3288498 (-)
G1990760 LOC100379111 other upstream 597268 3502951 ~ 3515660 (-)

Expression

LOC118944482(LOC106588022) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC118944482(LOC106588022) Expression in each Bioproject

Bar chart with 19 bars.
LOC118944482(LOC106588022) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network