LOC110507004 (LOC106588039)


Basic Information

Item Value
gene id LOC110507004
gene name LOC106588039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 3491895 ~ 3496478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964371.1
TGCCCCTATATGGTCAAAACGATTTCGCAATACTTGGAGCAGCAACAAAAACATACACAAGACTTCATCAACTAACTTATTTGGTCAACGAAAAATACGGACATTTACTCCCAACTTGTTATACTTTTGACGACACCTAAAACAAAAAGCAGACAAGactccagaAACTCCAGTCTGCAGGAGTGCGTGCAGACACCCATTCATCCAGAGTGCCACCCAACCAGCACGCCAGTCATAGCAGACGGACAGTGAGGCGAGCGGTCAGCAGATCCGAACCAAATGAGCAAGAGGTCGCAGCAGACGATAAACACGGAGCAGAACAGGGGGACTGTTAGTGTGATCCAGGGCCAGGCTAGTGgagcaacaacaacatcaagaCCACCAGGAGGAAGCTTACAGCTGGTACCCCAGCTAGTCCCTGCGACCCCAGCCGGAGGAGGAGGCAAGGCCAAGATGAAGAAGACGTCGGGGGACAAGGACAGTGACGAGTACCGTCAGCGGCGGGAACGGAACAACCTGGCGGTGAAGAAGAGCAGGATGAGATCCAAGCAGAAGGCCCAGGACACGCAGCAACGTGTCAACGAGCTGAAAGAGGAGAACGAGAGGCTGGAGGCCAAGATCAAGCTGCTCAGCaaagagctgtctgtcctcaagGACCTCTTCCTGGAACACGCCCACAACCTGGCCGACAACGTCCAAGCGCCTGGCGCGGAGGGGGCCAGCCCcgcccacaacaacaacaacaacaacaatggggcgtgtaacaacaacaacaacagcagccagTGAGAAGAGGGCAGGGACATGAAATATGATACCTCGTGGTTgagtgcttcccaaatggcaccctatttccccatagggccctggtctaaagtagtgcactatgaagggaatagggtgccattttgagtCAACCAGGGtgatggtaaatagacagctcgCCACTGCTTCTTAACCATACTGGAGTTTCTGCCTCTCGCTCCTCCCAGAGATGATATATACTGGCAGAGAGATTTCACTGTTGTCTTCTTTGTGCGTTCAGATTGGttcacaattattttttttttaagagttTTTGtccactttttaatttttttttttaacaatttgGAGACATTTCTAAAGAGACCCTGTTGTGTTGAGTCACACGATAAACTATTCACTAGTTAAGATGATGATGTGGGTGAGGGGggaaagtatatatttttattattttggtttCTTGTTCCTTTTAAGAGAATGTTTGGTGAACTAGCTACCATTTTTGTCTGGCGTTGTAGTATTGTCAGTACATTCACTAGTTAAGATGATGTGAGGGGGGGGAaagtatatattttattattttggttTGTAGTATTGTCAGTACATTCACTACGGTTGAAGTTAGTCAGAATGATGCCTGTTTTTTTCATTTTTTGGGATGCATCTGTTGGCTTCAGATATGCACAcgttgtacatttttattttttaaatatatatatataatttttttgtgtCCTAATCGAATGGCTTTACTTCTGCTTTGAGCTGTTTTGGGTAGAAGAGGACTGTAAATATCAAGAGTCAAATACAAAGAGGTGAGATGAGATTGGACCCAAAGCCTAACTTAAGATCAGCTTAAACCTTCTTCttctcttgtttttttttgttgttgctcaagACGTGTTGTTGACGTCAGCTTTTCATAATCTCGAGTTTCAGGCCTGTGTGAGATCGAGTCATTCACTGTGTTCATTTACCCATAGTTCCAACAGGCCTCAGACCAGCCCTTTCAGTCAGAGACCCAGATAGACAGAGGTGGCGTCTCAAACAGCGCCCTGTTCCCTAGACGGTGCACTAGTTTCGACCCCCTATGTGGCGCTGGTCAAAAAAAAATAAGGTACAAATGTAGTTCGCTAAATAAGGaattaggatgccatttgggatacagaccgggggggggacagaggtgtGTTCGCAGTTAAGGAGTGTCCCAGCCCAGACTAGACAGCCCAGACTATCATGCAACCTCCGTGGGATTAAACTCCAGACGTTTCGCACGGCGTCACAGGCCGCTGCTAATTCAAAGTTAAGCCTTTCTCCAAACCAACCCTAAAAcctggagagaaagacagaacaacaggacaatgagccaTTCTGTCTGCTTGGGCGTTGGGGATGCTAAATCACCTCCTAATTGGCCCCGGCTAGCTAGAACAGAGCGAGGCACGTTGGCTCCCGCCTCCAGTGGTGTCAGGCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGGCTCAGTCAGAGGCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGGCTCAGTCAGAGGCTCAGTCAGAGGCTATCAGAATGTGTAGAAAGAAAGGCAGACacctgatttttttttgttgtgtgttttgtttctGTTGTCAGACTTGAGTTATTATCTGTAGGATTGTCTCCTCTGAAACAACGGCATATTCTGAtgtgatgatgaggatgaagatgatgatgtggATGCGTATTTGGCCAGAGGAGTCGACGTTGTCCGTTGAGTGTCTGTGATTTATAGGATgcgtccccaatggcaccctgtccccgattttttatttttttatagtgcactacttttttgaGTAGAGCCTTGTCAACAGGCACTATATAACTATATCTAGGGTGTCTCTTGGAGTGCTGTTGTAGCCGTCTGTACCTCAGGCTACCAGCCACACCAAACAGGGCCTTTTTCTTTCTCAGACCTCTGAAACATCTTTTCAAttgcttgttttgttttgtaatcTTTGTTTTTCTTACaacttgtattttttaaaaaGCAGCATGATGGAAGTGGTttgcatgggg
>XM_036964369.1
CCCCTATATGGTCAAAACGATTTCGCAATACTTGGAGCAGCAACAAAAACATACACAAGACTTCATCAACTAACTTATTTGGTCAACGAAAAATACGGACATTTACTCCCAACTTGTTATACTTTTGACGACACCTAAAACAAAAAGCAGACAAGGTAACGTCGTGGATTTGactccagaAACTCCAGTCTGCAGGAGTGCGTGCAGACACCCATTCATCCAGAGTGCCACCCAACCAGCACGCCAGTCATAGCAGACGGACAGTGAGGCGAGCGGTCAGCAGATCCGAACCAAATGAGCAAGAGGTCGCAGCAGACGATAAACACGGAGCAGAACAGGGGGACTGTTAGTGTGATCCAGGGCCAGGCTAGTGgagcaacaacaacatcaagaCCACCAGGAGGAAGCTTACAGCTGGTACCCCAGCTAGTCCCTGCGACCCCAGCCGGAGGAGGAGGCAAGGCCAAGATGAAGAAGACGTCGGGGGACAAGGACAGTGACGAGTACCGTCAGCGGCGGGAACGGAACAACCTGGCGGTGAAGAAGAGCAGGATGAGATCCAAGCAGAAGGCCCAGGACACGCAGCAACGTGTCAACGAGCTGAAAGAGGAGAACGAGAGGCTGGAGGCCAAGATCAAGCTGCTCAGCaaagagctgtctgtcctcaagGACCTCTTCCTGGAACACGCCCACAACCTGGCCGACAACGTCCAAGCGCCTGGCGCGGAGGGGGCCAGCCCcgcccacaacaacaacaacaacaacaatggggcgtgtaacaacaacaacaacagcagccagTGAGAAGAGGGCAGGGACATGAAATATGATACCTCGTGGTTgagtgcttcccaaatggcaccctatttccccatagggccctggtctaaagtagtgcactatgaagggaatagggtgccattttgagtCAACCAGGGtgatggtaaatagacagctcgCCACTGCTTCTTAACCATACTGGAGTTTCTGCCTCTCGCTCCTCCCAGAGATGATATATACTGGCAGAGAGATTTCACTGTTGTCTTCTTTGTGCGTTCAGATTGGttcacaattattttttttttaagagttTTTGtccactttttaatttttttttttaacaatttgGAGACATTTCTAAAGAGACCCTGTTGTGTTGAGTCACACGATAAACTATTCACTAGTTAAGATGATGATGTGGGTGAGGGGggaaagtatatatttttattattttggtttCTTGTTCCTTTTAAGAGAATGTTTGGTGAACTAGCTACCATTTTTGTCTGGCGTTGTAGTATTGTCAGTACATTCACTAGTTAAGATGATGTGAGGGGGGGGAaagtatatattttattattttggttTGTAGTATTGTCAGTACATTCACTACGGTTGAAGTTAGTCAGAATGATGCCTGTTTTTTTCATTTTTTGGGATGCATCTGTTGGCTTCAGATATGCACAcgttgtacatttttattttttaaatatatatatataatttttttgtgtCCTAATCGAATGGCTTTACTTCTGCTTTGAGCTGTTTTGGGTAGAAGAGGACTGTAAATATCAAGAGTCAAATACAAAGAGGTGAGATGAGATTGGACCCAAAGCCTAACTTAAGATCAGCTTAAACCTTCTTCttctcttgtttttttttgttgttgctcaagACGTGTTGTTGACGTCAGCTTTTCATAATCTCGAGTTTCAGGCCTGTGTGAGATCGAGTCATTCACTGTGTTCATTTACCCATAGTTCCAACAGGCCTCAGACCAGCCCTTTCAGTCAGAGACCCAGATAGACAGAGGTGGCGTCTCAAACAGCGCCCTGTTCCCTAGACGGTGCACTAGTTTCGACCCCCTATGTGGCGCTGGTCAAAAAAAAATAAGGTACAAATGTAGTTCGCTAAATAAGGaattaggatgccatttgggatacagaccgggggggggacagaggtgtGTTCGCAGTTAAGGAGTGTCCCAGCCCAGACTAGACAGCCCAGACTATCATGCAACCTCCGTGGGATTAAACTCCAGACGTTTCGCACGGCGTCACAGGCCGCTGCTAATTCAAAGTTAAGCCTTTCTCCAAACCAACCCTAAAAcctggagagaaagacagaacaacaggacaatgagccaTTCTGTCTGCTTGGGCGTTGGGGATGCTAAATCACCTCCTAATTGGCCCCGGCTAGCTAGAACAGAGCGAGGCACGTTGGCTCCCGCCTCCAGTGGTGTCAGGCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGGCTCAGTCAGAGGCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGGCTCAGTCAGAGGCTCAGTCAGAGGCTATCAGAATGTGTAGAAAGAAAGGCAGACacctgatttttttttgttgtgtgttttgtttctGTTGTCAGACTTGAGTTATTATCTGTAGGATTGTCTCCTCTGAAACAACGGCATATTCTGAtgtgatgatgaggatgaagatgatgatgtggATGCGTATTTGGCCAGAGGAGTCGACGTTGTCCGTTGAGTGTCTGTGATTTATAGGATgcgtccccaatggcaccctgtccccgattttttatttttttatagtgcactacttttttgaGTAGAGCCTTGTCAACAGGCACTATATAACTATATCTAGGGTGTCTCTTGGAGTGCTGTTGTAGCCGTCTGTACCTCAGGCTACCAGCCACACCAAACAGGGCCTTTTTCTTTCTCAGACCTCTGAAACATCTTTTCAAttgcttgttttgttttgtaatcTTTGTTTTTCTTACaacttgtattttttaaaaaGCAGCATGATGGAAGTGGTttgcatgggg
>XM_036964370.1
CCCCTATATGGTCAAAACGATTTCGCAATACTTGGAGCAGCAACAAAAACATACACAAGACTTCATCAACTAACTTATTTGGTCAACGAAAAATACGGACATTTACTCCCAACTTGTTATACTTTTGACGACACCTAAAACAAAAAGCAGACAAGGTAACGTCGTGGATTTGactccagaAACTCCAGTCTGCAGGAGTGCGTGCAGACACCCATTCATCCAGAGTGCCACCCAACCAGCACGCCAGTCATAGCAGACGGACAGTGAGGCGAGCGGTCAGCAGATCCGAACCAAATGAGCAAGAGGTCGCAGCAGACGATAAACACGGAGCAGAACAGGGGGACTGTTAGTGTGATCCAGGGCCAGGCTAGTGgagcaacaacaacatcaagaCCACCAGGAGGAAGCTTACAGCTGGTACCCCAGCTAGTCCCTGCGACCCCAGCCGGAGGAGGAGGCAAGGCCAAGATGAAGAAGACGTCGGGGGACAAGGACAGTGACGAGTACCGTCAGCGGCGGGAACGGAACAACCTGGCGGTGAAGAAGAGCAGGATGAGATCCAAGCAGAAGGCCCAGGACACGCAGCAACGTGTCAACGAGCTGAAAGAGGAGAACGAGAGGCTGGAGGCCAAGATCAAGCTGCTCAGCaaagagctgtctgtcctcaagGACCTCTTCCTGGAACACGCCCACAACCTGGCCGACAACGTCCAAGCGCCTGGCGCGGAGGGGGCCAGCCCcgcccacaacaacaacaacaacaacaatggggcgtgtaacaacaacaacaacagcagccagTGAGAAGAGGGCAGGGACATGAAATATGATACCTCGTGGTTgagtgccattttgagtCAACCAGGGtgatggtaaatagacagctcgCCACTGCTTCTTAACCATACTGGAGTTTCTGCCTCTCGCTCCTCCCAGAGATGATATATACTGGCAGAGAGATTTCACTGTTGTCTTCTTTGTGCGTTCAGATTGGttcacaattattttttttttaagagttTTTGtccactttttaatttttttttttaacaatttgGAGACATTTCTAAAGAGACCCTGTTGTGTTGAGTCACACGATAAACTATTCACTAGTTAAGATGATGATGTGGGTGAGGGGggaaagtatatatttttattattttggtttCTTGTTCCTTTTAAGAGAATGTTTGGTGAACTAGCTACCATTTTTGTCTGGCGTTGTAGTATTGTCAGTACATTCACTAGTTAAGATGATGTGAGGGGGGGGAaagtatatattttattattttggttTGTAGTATTGTCAGTACATTCACTACGGTTGAAGTTAGTCAGAATGATGCCTGTTTTTTTCATTTTTTGGGATGCATCTGTTGGCTTCAGATATGCACAcgttgtacatttttattttttaaatatatatatataatttttttgtgtCCTAATCGAATGGCTTTACTTCTGCTTTGAGCTGTTTTGGGTAGAAGAGGACTGTAAATATCAAGAGTCAAATACAAAGAGGTGAGATGAGATTGGACCCAAAGCCTAACTTAAGATCAGCTTAAACCTTCTTCttctcttgtttttttttgttgttgctcaagACGTGTTGTTGACGTCAGCTTTTCATAATCTCGAGTTTCAGGCCTGTGTGAGATCGAGTCATTCACTGTGTTCATTTACCCATAGTTCCAACAGGCCTCAGACCAGCCCTTTCAGTCAGAGACCCAGATAGACAGAGGTGGCGTCTCAAACAGCGCCCTGTTCCCTAGACGGTGCACTAGTTTCGACCCCCTATGTGGCGCTGGTCAAAAAAAAATAAGGTACAAATGTAGTTCGCTAAATAAGGaattaggatgccatttgggatacagaccgggggggggacagaggtgtGTTCGCAGTTAAGGAGTGTCCCAGCCCAGACTAGACAGCCCAGACTATCATGCAACCTCCGTGGGATTAAACTCCAGACGTTTCGCACGGCGTCACAGGCCGCTGCTAATTCAAAGTTAAGCCTTTCTCCAAACCAACCCTAAAAcctggagagaaagacagaacaacaggacaatgagccaTTCTGTCTGCTTGGGCGTTGGGGATGCTAAATCACCTCCTAATTGGCCCCGGCTAGCTAGAACAGAGCGAGGCACGTTGGCTCCCGCCTCCAGTGGTGTCAGGCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGGCTCAGTCAGAGGCTCAGTCAGAGTCTCAGTCAGAGTCTCAGTCAGAGGCTCAGTCAGAGGCTCAGTCAGAGGCTATCAGAATGTGTAGAAAGAAAGGCAGACacctgatttttttttgttgtgtgttttgtttctGTTGTCAGACTTGAGTTATTATCTGTAGGATTGTCTCCTCTGAAACAACGGCATATTCTGAtgtgatgatgaggatgaagatgatgatgtggATGCGTATTTGGCCAGAGGAGTCGACGTTGTCCGTTGAGTGTCTGTGATTTATAGGATgcgtccccaatggcaccctgtccccgattttttatttttttatagtgcactacttttttgaGTAGAGCCTTGTCAACAGGCACTATATAACTATATCTAGGGTGTCTCTTGGAGTGCTGTTGTAGCCGTCTGTACCTCAGGCTACCAGCCACACCAAACAGGGCCTTTTTCTTTCTCAGACCTCTGAAACATCTTTTCAAttgcttgttttgttttgtaatcTTTGTTTTTCTTACaacttgtattttttaaaaaGCAGCATGATGGAAGTGGTttgcatgggg

Function

NR:

description
CCAAT/enhancer-binding protein gamma-like

GO: NA

KEGG:

id description
K10049 CEBPG; CCAAT/enhancer binding protein (C/EBP), gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964371.1 False 2869 mRNA 0.46 2 3491895 3496478
XM_036964369.1 False 2884 mRNA 0.46 2 3491897 3496478
XM_036964370.1 True 2813 mRNA 0.46 3 3491897 3496478
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Neighbor

gene id symbol gene type direction distance location
LOC110516197 LOC106588136 coding upstream 171544 3121914 ~ 3321478 (+)
LOC118944541 NA coding upstream 866473 2624750 ~ 2625422 (+)
LOC118936601 LOC106588035 coding upstream 1046029 2411461 ~ 2445866 (+)
LOC118944438 zdhhc1 coding upstream 1101745 2300199 ~ 2390150 (+)
LOC110518853 LOC106593614 coding upstream 1372347 2106537 ~ 2119548 (+)
LOC110507010 LOC100379111 coding downstream 6448 3502926 ~ 3506049 (+)
LOC110518574 LOC106588131 coding downstream 376852 3873330 ~ 3932334 (+)
LOC110518573 LOC106592649 coding downstream 437922 3934400 ~ 3965539 (+)
trnat-agu-149 NA coding downstream 476837 3973315 ~ 3973388 (+)
trnat-agu-150 NA coding downstream 477887 3974365 ~ 3974438 (+)
G1990580 LOC106562804 non-coding upstream 13815 3475640 ~ 3478080 (+)
G1990589 NA non-coding upstream 46047 3445643 ~ 3445848 (+)
G1990588 NA non-coding upstream 56291 3435391 ~ 3435604 (+)
G1990586 NA non-coding upstream 59991 3431680 ~ 3431904 (+)
G1990581 NA non-coding upstream 70773 3419617 ~ 3421122 (+)
G1990639 NA non-coding downstream 87754 3584232 ~ 3584497 (+)
G1990652 NA non-coding downstream 129251 3625729 ~ 3626046 (+)
G1990656 NA non-coding downstream 139673 3636151 ~ 3636923 (+)
G1990657 NA non-coding downstream 140591 3637069 ~ 3637399 (+)
G1990663 NA non-coding downstream 165694 3662172 ~ 3731674 (+)
G1990611 LOC106588037 other upstream 1480 3481954 ~ 3490415 (+)
G1990075 NA other upstream 467419 3022763 ~ 3024476 (+)
G1990148 NA other upstream 521013 2966262 ~ 2970882 (+)
G1990054 NA other upstream 758355 2731552 ~ 2733540 (+)
G1990736 NA other downstream 348862 3845340 ~ 3846512 (+)
G1990964 NA other downstream 473337 3969815 ~ 3970118 (+)
LOC110517761 LOC106588045 other downstream 479616 3975460 ~ 4053666 (+)
G1991499 NA other downstream 1231389 4727867 ~ 4729681 (+)

Expression

LOC110507004(LOC106588039) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110507004(LOC106588039) Expression in each Bioproject

Bar chart with 21 bars.
LOC110507004(LOC106588039) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network