LOC118944435 (LOC106588010)


Basic Information

Item Value
gene id LOC118944435
gene name LOC106588010
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 4439833 ~ 4700484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963685.1
gagagagggaacgagagagacacagagagagggaacgagagagacacaggagagagagaacgagagagacaggagagagagaacgagagagacaggagagagcttTGAATAGCGCAACTTATAATTCCACTGACCCAGGACTTTAAGGATGTATTTTGTGATCTCAGCTATGAAAGcTCAAATTGAAATTATTCCTTGCAAGATATGTGGAGATAAGTCGTCAGGTATCCACTACGGCGTGATCACCTGCGAAGGCTGCAAGggtTTCTTCAGGAGGAGCCAGCAGAGTAATGCAGGGTACTCCTGCCCTCGTCAGAAGAACTGTTTGATTGACAGGACCAGCAGAAACCGCTGCCAACACTGTAGACTGCAGAAATGCCTGACCGTAGGCATGTCACGGGACGCGGTGAAGTTTGGCCGTATGTccaagaagcagagagacagcctgTATGCTGAGGTCCAGAAGCACCGTCTCCAGCAGGCCCAGCAGCTGCAGAGAGACCACCATCCCCAGAACCCGGAGGAGGTCgagcctctctctccccactacgGCCTCACCGACCTCCCGGAAGACCTGGGAGGGTACATGGAGGAAAACAGCCCTGGGGGGGTTAACGGCCCAGCCTCCAAGGGGGGCTCTGACTCGGGAGGAGTGGGGGGGTTCTACCTGGACATTCAGCCGTCTCCTGATCAGTCTGGTCTGGATATTAACGGTATAAAACCGGAGCCTCTTTGTGATTATGGTTCCAACCAGGGTTTCTTCCCCTACTGTTCCTTCACCAACGGAGAGACGTCTCCCACAGTATCTATGGCTGAGCTagAACACCTAGGCCAGAACATCTCCAAGTCCCACCAGGAGACGTGTCAGTACCTGAGGGAGGAGCTACAGAGCATGACCTGGCAGGCCTTCCTCCAAGAGGAGATAGAGACCTACCAGACGAAGCCGGAGGAGGTGATGTGGCAGCTGTGTGCCATCAAGATAACGGAGGCCATCCAGTACGTGGTGGAGTTCGCCAAACGCATCGACGGCTtcatggagctctgtcagaacgACCAGATAGTGTTGCTCAAAGCAGGGTCTCTTGAGGTGGTGTTCATCAGGATGTGTCGTGCCTTTGACTCTCAGAACAGCACCGTCTACTTCGATGGGAAGTACGCTGGGACCGACGTCTTCAAAGCGTTGGgTTGTGACGATCTGATTCGCTTAGTCTTTGAGTTTGGGAAGAGTATGTCTGTCATCCATCTCTCCGAGGAGGAGATCGCTCTCTTCTCCGCGTACGTCCTGATGTCTGCAGATCGGACGTGGCTTCAGGAGAAGGTGAAGGTAGAGAAGCTGCAACAGAAGATCCAGCTGGCTCTCCAACATGTCCTTCAGAAGAACGGCAGAGAGGACGTGGTTCTCACAAagttgATATGCAAAGTGTCGACCCTGCGGGCGTTAGTCAGCCGGCATACAGAGAAGCTGACGGCCTTCAAAGCAACCTACCCAGACATTGTCCAAGCCCACTTCCCTCCACTATACAAGGAGCTGTTTGGCTCAGACTTTGAACAGGGCTCCATGTCCATAGACGGCTAGCCGAGGGCCCCGTCGGTGACCTACCGTACTGTATCTGCCCTGTACTGTAGTTTACGTCATGGAGCCAGTGTTGATctttgggagacagagagacacgttGAATGAGAGACACTCAGACAGTGCCTTGGTCCTGGCCCTAACTTGCTCTTACCTGGACAGACACCCGACATTTCTCTCTTCATGTTTGTCTGTcttctcctctgtgtcctcctGGATCATGAGTTGGTTGGGAGGTTTCTGGgaggaaaaaaaacattcaaGCACTTAGAAAACCAACAGCCTTTCCTCTCACAATAACAAACCTATTGGGATGGGGAGTGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGTTGTCATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGAGAGCGGATTTAGTCACAACACCTACCTATGGACAacggtgtgatggagagaggattTAGTCACAACACCTACCTATGGATAACGGTGTCATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATG
>XM_036963683.1
CAGTAGCGCACCAACACATTGCACTAGTTCCAGCCTTCGGTAAATTAGCTTGACATGCTTTTACAGCTCGTTATTATTTGACTAGCTACGTTATATATTTCGTCGTTAGTAGCTACGCCTCGTTCACATTTATCAATAGGATAGTTATGGAGATTTATATGGAGTCCTCACCGGACCCTGCTTCCAGTGACGCGGGAAACAGCGTCTCTAAACCGGCTACTCCAGTCATGGACACGCCGGCGAATCTGGAGACCCTTCAAACGGACCACCACCACCAAACCCCTGTTAGAGGACAGAGTCGTTCCGGCTCCAACAAAGGGTCGTCAGCAGCGAAGAAGACACATACATcTCAAATTGAAATTATTCCTTGCAAGATATGTGGAGATAAGTCGTCAGGTATCCACTACGGCGTGATCACCTGCGAAGGCTGCAAGggtTTCTTCAGGAGGAGCCAGCAGAGTAATGCAGGGTACTCCTGCCCTCGTCAGAAGAACTGTTTGATTGACAGGACCAGCAGAAACCGCTGCCAACACTGTAGACTGCAGAAATGCCTGACCGTAGGCATGTCACGGGACGCGGTGAAGTTTGGCCGTATGTccaagaagcagagagacagcctgTATGCTGAGGTCCAGAAGCACCGTCTCCAGCAGGCCCAGCAGCTGCAGAGAGACCACCATCCCCAGAACCCGGAGGAGGTCgagcctctctctccccactacgGCCTCACCGACCTCCCGGAAGACCTGGGAGGGTACATGGAGGAAAACAGCCCTGGGGGGGTTAACGGCCCAGCCTCCAAGGGGGGCTCTGACTCGGGAGGAGTGGGGGGGTTCTACCTGGACATTCAGCCGTCTCCTGATCAGTCTGGTCTGGATATTAACGGTATAAAACCGGAGCCTCTTTGTGATTATGGTTCCAACCAGGGTTTCTTCCCCTACTGTTCCTTCACCAACGGAGAGACGTCTCCCACAGTATCTATGGCTGAGCTagAACACCTAGGCCAGAACATCTCCAAGTCCCACCAGGAGACGTGTCAGTACCTGAGGGAGGAGCTACAGAGCATGACCTGGCAGGCCTTCCTCCAAGAGGAGATAGAGACCTACCAGACGAAGCCGGAGGAGGTGATGTGGCAGCTGTGTGCCATCAAGATAACGGAGGCCATCCAGTACGTGGTGGAGTTCGCCAAACGCATCGACGGCTtcatggagctctgtcagaacgACCAGATAGTGTTGCTCAAAGCAGGGTCTCTTGAGGTGGTGTTCATCAGGATGTGTCGTGCCTTTGACTCTCAGAACAGCACCGTCTACTTCGATGGGAAGTACGCTGGGACCGACGTCTTCAAAGCGTTGGgTTGTGACGATCTGATTCGCTTAGTCTTTGAGTTTGGGAAGAGTATGTCTGTCATCCATCTCTCCGAGGAGGAGATCGCTCTCTTCTCCGCGTACGTCCTGATGTCTGCAGATCGGACGTGGCTTCAGGAGAAGGTGAAGGTAGAGAAGCTGCAACAGAAGATCCAGCTGGCTCTCCAACATGTCCTTCAGAAGAACGGCAGAGAGGACGTGGTTCTCACAAagttgATATGCAAAGTGTCGACCCTGCGGGCGTTAGTCAGCCGGCATACAGAGAAGCTGACGGCCTTCAAAGCAACCTACCCAGACATTGTCCAAGCCCACTTCCCTCCACTATACAAGGAGCTGTTTGGCTCAGACTTTGAACAGGGCTCCATGTCCATAGACGGCTAGCCGAGGGCCCCGTCGGTGACCTACCGTACTGTATCTGCCCTGTACTGTAGTTTACGTCATGGAGCCAGTGTTGATctttgggagacagagagacacgttGAATGAGAGACACTCAGACAGTGCCTTGGTCCTGGCCCTAACTTGCTCTTACCTGGACAGACACCCGACATTTCTCTCTTCATGTTTGTCTGTcttctcctctgtgtcctcctGGATCATGAGTTGGTTGGGAGGTTTCTGGgaggaaaaaaaacattcaaGCACTTAGAAAACCAACAGCCTTTCCTCTCACAATAACAAACCTATTGGGATGGGGAGTGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGTTGTCATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGAGAGCGGATTTAGTCACAACACCTACCTATGGACAacggtgtgatggagagaggattTAGTCACAACACCTACCTATGGATAACGGTGTCATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATG
>XM_036963684.1
CAGTAGCGCACCAACACATTGCACTAGTTCCAGCCTTCGGTAAATTAGCTTGACATGCTTTTACAGCTCGTTATTATTTGACTAGCTACGTTATATATTTCGTCGTTAGTAGCTACGCCTCGTTCACATTTATCAATAGGATAGTTATGGAGATTTATATGGAGTCCTCACCGGACCCTGCTTCCAGTGACGCGGGAAACAGCGTCTCTAAACCGGCTACTCCAGTCATGGACACGCCGGCGAATCTGGAGACCCTTCAAACGGACCACCACCACCAAACCCCTGTTAGAGGACAGAGTCGTTCCGGCTCCAACAAAGGGTCGTCAGCAGCGAAGAAGACACATACATcTCAAATTGAAATTATTCCTTGCAAGATATGTGGAGATAAGTCGTCAGGTATCCACTACGGCGTGATCACCTGCGAAGGCTGCAAGggtTTCTTCAGGAGGAGCCAGCAGAGTAATGCAGGGTACTCCTGCCCTCGTCAGAAGAACTGTTTGATTGACAGGACCAGCAGAAACCGCTGCCAACACTGTAGACTGCAGAAATGCCTGACCGTAGGCATGTCACGGGACGCGGTGAAGTTTGGCCGTATGTccaagaagcagagagacagcctgTATGCTGAGGTCCAGAAGCACCGTCTCCAGCAGGCCCAGCAGCTGCAGAGAGACCACCATCCCCAGAACCCGGAGGAGGTCgagcctctctctccccactacgGCCTCACCGACCTCCCGGAAGACCTGGGAGGGTACATGGAGGAAAACAGCCCTGGGGGGGTTAACGGCCCAGCCTCCAAGGGGGGCTCTGACTCGGGAGGAGTGGGGGGGTTCTACCTGGACATTCAGCCGTCTCCTGATCAGTCTGGTCTGGATATTAACGAACACCTAGGCCAGAACATCTCCAAGTCCCACCAGGAGACGTGTCAGTACCTGAGGGAGGAGCTACAGAGCATGACCTGGCAGGCCTTCCTCCAAGAGGAGATAGAGACCTACCAGACGAAGCCGGAGGAGGTGATGTGGCAGCTGTGTGCCATCAAGATAACGGAGGCCATCCAGTACGTGGTGGAGTTCGCCAAACGCATCGACGGCTtcatggagctctgtcagaacgACCAGATAGTGTTGCTCAAAGCAGGGTCTCTTGAGGTGGTGTTCATCAGGATGTGTCGTGCCTTTGACTCTCAGAACAGCACCGTCTACTTCGATGGGAAGTACGCTGGGACCGACGTCTTCAAAGCGTTGGgTTGTGACGATCTGATTCGCTTAGTCTTTGAGTTTGGGAAGAGTATGTCTGTCATCCATCTCTCCGAGGAGGAGATCGCTCTCTTCTCCGCGTACGTCCTGATGTCTGCAGATCGGACGTGGCTTCAGGAGAAGGTGAAGGTAGAGAAGCTGCAACAGAAGATCCAGCTGGCTCTCCAACATGTCCTTCAGAAGAACGGCAGAGAGGACGTGGTTCTCACAAagttgATATGCAAAGTGTCGACCCTGCGGGCGTTAGTCAGCCGGCATACAGAGAAGCTGACGGCCTTCAAAGCAACCTACCCAGACATTGTCCAAGCCCACTTCCCTCCACTATACAAGGAGCTGTTTGGCTCAGACTTTGAACAGGGCTCCATGTCCATAGACGGCTAGCCGAGGGCCCCGTCGGTGACCTACCGTACTGTATCTGCCCTGTACTGTAGTTTACGTCATGGAGCCAGTGTTGATctttgggagacagagagacacgttGAATGAGAGACACTCAGACAGTGCCTTGGTCCTGGCCCTAACTTGCTCTTACCTGGACAGACACCCGACATTTCTCTCTTCATGTTTGTCTGTcttctcctctgtgtcctcctGGATCATGAGTTGGTTGGGAGGTTTCTGGgaggaaaaaaaacattcaaGCACTTAGAAAACCAACAGCCTTTCCTCTCACAATAACAAACCTATTGGGATGGGGAGTGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGTTGTCATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGAGAGCGGATTTAGTCACAACACCTACCTATGGACAacggtgtgatggagagaggattTAGTCACAACACCTACCTATGGATAACGGTGTCATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATGGACAACGGTGTGATGGGGAGAGGATTTAGTCACAACACCTACCTATG
>TU2278185
AGATCTGTGTGAAGCAGGCAGCTGCTGCTGATACCgcaagagacaggagagagggaacgagagagacacagagagagagaacgagagagacacaggagagaggttacgagagagacacaggagagagggaacgagagagacacagagagagggaacgagagagacacaggagagagagaacgagagagacacagagagagggaacgagagagacacaggagagagagaacgagagagacacaggagagagagaacgagagagacacagagagagggaacgagagagacacaggagagagagaacgagagagacacagagagagggaacgagagagacacagagagagggaacgagagagacacaggagagagagaacgagagagacacagagagagggaacgagagagacacaggagagagggaacgagagagacacaggagagagagaacgagagagacacagagagagggaacgagagagacacaggagagagggaacgagagagacacagagagagggaacgagagagacacaggagagagagaacgagagagacaggagagagagaacgagagagacaggagagagcttTGAATAGCGCAACTTATAATTCCACTGACCCAGGACTTTAAGGATGTATTTTGTGATCTCAGCTATGAAAGcTCAAATTGAAATTATTCCTTGCAAGATATGTGGAGATAAGTCGTCAGGTATCCACTACGGCGTGATCACCTGCGAAGGCTGCAAGggtTTCTTCAGGAGGAGCCAGCAGAGTAATGCAGGGTACTCCTGCCCTCGTCAGAAGAACTGTTTGATTGACAGGACCAGCAGAAACCGCTGCCAACACTGTAGACTGCAGAAATGCCTGACCGTAGGCATGTCACGGGACGCGGTGAAGTTTGGCCGTATGTccaagaagcagagagacagcctgTATGCTGAGGTCCAGAAGCACCGTCTCCAGCAGGCCCAGCAGCTGCAGAGAGACCACCATCCCCAGAACCCGGAGGAGGTCgagcctctctctccccactacgGCCTCACCGACCTCCCGGAAGACCTGGGAGGGTACATGGAGGAAAACAGC

Function

NR:

description
PREDICTED: nuclear receptor ROR-alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963685.1 False 2438 mRNA 0.52 10 4439833 4503872
XM_036963683.1 False 2610 mRNA 0.52 11 4439833 4700484
XM_036963684.1 False 2502 mRNA 0.52 11 4439833 4700484
TU2278185 True 1089 TUCP 0.53 4 4457659 4504360

Neighbor

gene id symbol gene type direction distance location
LOC110498670 anx2a coding downstream 48840 4370382 ~ 4390993 (-)
LOC110516700 LOC106591035 coding downstream 281789 4074045 ~ 4158044 (-)
LOC110506223 LOC106588037 coding downstream 947083 3477158 ~ 3492750 (-)
LOC118944414 NA coding downstream 1254041 3183940 ~ 3186858 (-)
LOC118944401 LOC106588129 coding downstream 1322590 2958963 ~ 3117243 (-)
LOC110526851 vps13c coding upstream 18168 4718652 ~ 4972108 (-)
LOC118944456 NA coding upstream 39432 4739916 ~ 4741747 (-)
LOC110525056 LOC106592677 coding upstream 273305 4973789 ~ 4975290 (-)
LOC110515683 LOC105025469 coding upstream 343296 5043780 ~ 5086440 (-)
LOC110515681 agrp1 coding upstream 443247 5143731 ~ 5147310 (-)
G1991351 NA non-coding downstream 4494 4434859 ~ 4435339 (-)
G1991352 NA non-coding downstream 10715 4428912 ~ 4429118 (-)
G1991334 NA non-coding downstream 16374 4339424 ~ 4423459 (-)
G1991356 NA non-coding downstream 72291 4366965 ~ 4367542 (-)
G1991480 NA non-coding upstream 59 4700543 ~ 4700835 (-)
G1991484 NA non-coding upstream 3373 4703857 ~ 4705474 (-)
G1991489 NA non-coding upstream 9760 4710244 ~ 4711694 (-)
G1991491 NA non-coding upstream 12146 4712630 ~ 4712920 (-)
G1991594 NA non-coding upstream 15417 4715901 ~ 4716864 (-)
G1990927 LOC106591093 other downstream 559820 3873304 ~ 3880013 (-)
G1990926 NA other downstream 566657 3872600 ~ 3873176 (-)
G1990907 NA other downstream 629273 3810205 ~ 3810560 (-)
G1990760 LOC100379111 other downstream 924173 3502951 ~ 3515660 (-)
G1991846 NA other upstream 557238 5257722 ~ 5259782 (-)
G1992375 NA other upstream 1007784 5708268 ~ 5708684 (-)
G1992485 NA other upstream 1285947 5986431 ~ 5988773 (-)
G1991370 NA non-coding downstream 3717 4453029 ~ 4453942 (-)
G1991399 NA non-coding upstream 278 4504638 ~ 4505167 (-)
G1991400 NA non-coding upstream 1314 4505674 ~ 4507545 (-)
G1991407 NA non-coding upstream 14515 4518875 ~ 4519139 (-)
G1991408 NA non-coding upstream 15657 4520017 ~ 4520482 (-)
G1991409 NA non-coding upstream 18205 4522565 ~ 4522804 (-)
G1991436 NA other upstream 82367 4586727 ~ 4587870 (-)

Expression


Co-expression Network