LOC110525056 (LOC106592677)


Basic Information

Item Value
gene id LOC110525056
gene name LOC106592677
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 4973789 ~ 4975290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605003.2
GTCCTTACTGTTCATtttcttccttctctttctccagaGCTGTGATCCTGACAAAGCTCATGTAATGTGGGTCGCTGAACAGATCCGTGTTTCAGTGGCCAAAAACAACCTTCTGTTGCCAATAGCGGAGTACAGCCTCCGCATCTCAGACATCATGTTGGGAGAAAAAACATCTCGGGAGAAAGGAAGGAAAACGATCTCTCTGTGTCCTAACATCATCACTCCGAATACAATCCCAGAGTTCTGCATCCCACCAAAGATCTCGCCACAGCAGGAGCTAAAGACGGTGGACTGGAGTAAAATTAGCCCTGTTGGAAAGGTGTCCTTTTCACCTGAGAAGGGCAGCAGCCCGGAGAGGGAGGTAGCAGTGAGAGAACGCGTCATCAACACTCATCCAACCCTCATCCAGGTAGAGAGCGTGGACGAGGCTCCATACGACCAGGGCTTCAGTGATGAGGAGAGTACCAACGCCGACCCCCAGAGCCAAGCAGCTCTCTCCCTGCCCCACCTGGCCAAGGCCCAGACCTGCTACGGTTTCTGTACCCTCCTGGAGAGCCCCCACACCCGGAGGAAAGAGTCTCTGTTCCACAGCCACCCCAACGCCTGCCCCCTCCCCCTGATCGCTGGCTCTCCCGGGCCTCGCGGCCGCTCCAAAACTTACTCCTCCAGAACCTCATCTCTACCCCACTCCCCGTCATCCTCCTTCAGCCTCACCAAGCTGACCTCCGGCAGGCTGTCTCCGGGAGGCTCCAGGCTGGTGGCTCTCCAGAGACAGAGCACCCTGGACAGTGACACCATCTCCTCCGCCGAGTCTTCCCCATTCAGCTCCCCTCTCCTGGCCAGGCCGTCTCCCAAGTCCTCCCTGCTCAAAGTCCTGAGCCACGACAGACTGCTGTCCCGGACAATGAGAAAAGCTGTGCTCTCCAGAAACAACTCTCTGTCCACGGATGAAGGCAGCTCCACGGACAACAGCCCCAATATCATCCGGAGAGCCTCTGATGCTGGATTAGTAGAACCCCTTCCCAGTGCCTTCACCCTGGCTCCCCCTGCCATCTTCCCCATAGACCTCGTCCTCCACAGAGAGAGGGTCATGAAGGAGAGTCTAGCTCCTGTAGGTAGAGAGGGGGCACTACGGCTCTCAGCAGAGTACAGCCTAGACAACCAGAGACTCAGAGTGAGGTTGATCAGTGCTGAGGGACTGTATGCTATCGCTGTGGATCCTAAGAGCATCAACTGCAGCATCGCTATCTGTCTGTTACCGGGGAAGATTCAGAAGCAACGCAGCGCGGTGATTAAGAGGAGCAGGAACCCCCTCTTCAAGGAGGATTTCTTCTTCTATGGTATCTCACAGGAAGATATCTGCTGCCGGTCGCTGCGGTTCAAAGTTGTCAACAAAATGTCCTCCATGAAAAGAGACTATATTTTGGGAGACTGTGAGATTTTGCTGAAAAGTTTATTATCAATgtagaaatgttttatttatttattttactaggcaagtc

Function

NR:

description
C2 calcium-dependent domain-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605003.2 True 1502 mRNA 0.54 1 4973789 4975290

Neighbor

gene id symbol gene type direction distance location
LOC110526851 vps13c coding downstream 1681 4718652 ~ 4972108 (-)
LOC118944456 NA coding downstream 232042 4739916 ~ 4741747 (-)
LOC118944435 LOC106588010 coding downstream 273305 4439833 ~ 4700484 (-)
LOC110498670 anx2a coding downstream 582796 4370382 ~ 4390993 (-)
LOC110516700 LOC106591035 coding downstream 815745 4074045 ~ 4158044 (-)
LOC110515683 LOC105025469 coding upstream 68490 5043780 ~ 5086440 (-)
LOC110515681 agrp1 coding upstream 168441 5143731 ~ 5147310 (-)
LOC118944412 LOC100135822 coding upstream 273989 5249279 ~ 5301650 (-)
usp8 LOC106592072 coding upstream 687286 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 774236 5749526 ~ 5761005 (-)
G1991688 NA non-coding downstream 75 4973265 ~ 4973714 (-)
G1991650 NA non-coding downstream 8984 4963447 ~ 4964805 (-)
G1991649 NA non-coding downstream 14251 4958934 ~ 4959538 (-)
G1991646 NA non-coding downstream 16021 4951526 ~ 4957768 (-)
G1991643 NA non-coding downstream 27666 4944621 ~ 4946123 (-)
G1991690 NA non-coding upstream 12431 4987721 ~ 4988393 (-)
G1991699 NA non-coding upstream 80854 5056144 ~ 5057143 (-)
G1991711 NA non-coding upstream 121897 5097187 ~ 5098290 (-)
G1991722 NA non-coding upstream 148837 5124127 ~ 5124802 (-)
G1991807 NA non-coding upstream 152513 5127803 ~ 5210329 (-)
G1991436 NA other downstream 385919 4586727 ~ 4587870 (-)
G1991382 NA other downstream 499525 4473753 ~ 4474264 (-)
G1991381 NA other downstream 500172 4473282 ~ 4473617 (-)
G1991846 NA other upstream 282432 5257722 ~ 5259782 (-)
G1992375 NA other upstream 732978 5708268 ~ 5708684 (-)
G1992485 NA other upstream 1011141 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 1421754 6391414 ~ 6444276 (-)

Expression


Co-expression Network