LOC110515683 (LOC105025469)


Basic Information

Item Value
gene id LOC110515683
gene name LOC105025469
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5043780 ~ 5086440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964493.1
CCGTCGAAGACGCGCATCGGGAGACCAAGTCTCCTTTCACTTGTTGTAAAGGCGGCTTTTCTCACAAGTGGATAAACGCATAACCATTTCCTCCAAACGATGCGTAAAAGTAGCCTAAACCCGACACATCTGGAACTTGACACAGCAGTGTTACTGGACTGAGTGTGATACACAGACCAGATTGTATACCATGCGAGGCACTGGACAAAATCACCACTTTCTCCGGAGATAGCAACGCTGTTATTTCTTAAACTCCTGGAACGTCTGGACGAGGACGTCGCGgccgtgtgagagagagaaccatgCTGCTGCCGGGCAACGAAACGGGCTACGTCTGGACCGAGTTATTAAACACCGGCAACCTGACGGCGTGTGCCGGTGAAGAAGACCACGGTGGCCCGGAGGCGGTGATTGTTCCGGTCATTTTTGGATGTATATTTTTCCTGGGTGTCGTCGGGAACTCTCTAGTGATGATTGTAATAGGGAAAATCAAGGCCCGGCGCAACAGAAGTACGACAAACATTTTCATCCTCAATTTAAGTATAGCGGATCTATTGTTTTTGGTATTTTGTGTCCCGTTCCAGGCTACTATATACTCCCTACCTGAGTGGATATTTGGAGCCTTTTTATGTAAATGTGTTCACTATTTAGTGATGGTGTGTATGCTGGTGAGCATCTTCACGCTGGTTGCCATGTCAGTGGACAGGTACATAGCTGTTGTACACTCCAAAAAGTACCCCTGCATTCGCAACAGGAGGAATGCCCTCATAGGGGTCTGTGTGATTTGGGCACTATCGTTCATATTCTCTATACCAGTGGCGCAACACCAGATACTTACTGACCACCCGGAAGCGCCGAACAGTTCGTTCTGCTGGGAAGCGTGGTACGCAAGCGCTTCCAAACACACCTACAAAGTCACTATTTTAGTCATTGGCTATCTGTTGCCGTTGGGGTTGATCATATGCTGCTATGCGAAGGTGTTATTCCATCTCCACAAGAAGATGAAGAATATGTCCAAGAAATCAGAACGCTCAAAAAGAAAGacaGCCCAGACGGTCCTCCTGGTGGTCGCAGCCTTCCTGACCTGTTGGATGCCTCATCACATCATCGCCATGtgggtggagtttggagtgttcCCGCTCAACGACGCCTCCTTCGCGTTACGGATCATCTCCCACTGCCTGGCGTACGGGAACTCCTGCATCAACCCCATCCTGTACGCCTTTCTGTCAGAGAACTTCCGGAAGGCCTGTCGCCAGGTGTTCACCTGCCGGTTCCTCTATCCTCCACCCCCACAGGAGAAGGTGGTGCGAATCCGAATGGAGAACTTCTCAACTACACACTCTATTACCACTAATATCTGACACCACACACTATATTACCAGTAATATCTGACACCACGCACTTTATTACCACTAATATCTGACACCACACATTCTATTACCACTAATATCTGACACCACACATTCTATTACCACTAATATCTGACACCACACATTATATTACCACTAAATCTGACACCACACACTCTATTACCAGTAATATCTGACACCACGCACTTTATTACCACTAATATCTGACACCACACATTCTATTACCACTAATATCTGACACATCACACTCTATTACCACTAATATCTGACACCACATGTTCTATTACCACTAATATctgacaccacaccacacactctaTTACCACTAATATCTGACACCACACACTCTATTACCACTCATATCTGACACCACACACTCTATTACCACTAATATCTGACAGCATACATTCTATTACCACTAATATctgacaccacaccacacactctaTTACCACTAATATCTGACACCACACATTCTATTACCACTAACATCTGACACCACACACTCTATTACCACTATATCTGACACCACACACTCTATTACCACTAAAATctgacaccacaccacacactctaTTACCGCTAATTTCTGACACCACACATTCTATTACCACTAACATCTGACACCAAACATTCTATTACCACTAATATCTAACACTACGCATTCTATTACCACTAATATCTGACACCTAACATTCTATTACCACTAATATCTGCACTATATTACCACTAAATCTGACACCACACACTCTATTACCACTAAATCTGACACCACACACTATATTACCACTAATATCTGACACCACACACTCTATTACCACTAATATCTGACACCACACACTCTATTACCGCTAATATCTGACACCACACACTCTATTACCACTAATATCTGACACCACACATTCTATTACCACTAACATCTGACACCACACACTCTATTACCACTAATATctgacaccacaccacacatccTATTACCATTATATCTGACACCACACACTCTATTACCACTAATATCTGACACCACACACTCTATTACCACTAAATctgacaccacaccacacattCTATTACCACTAATATCTGAGACCACACATTATATTACCACTAACATCTGACACCACACCACAAAACTGGgacaagactgggactgggacaagACTAGGGCTGGGACAAGACTGGGACAAG
>TU2278677
GAGGAATGCCCTCATAGGGGTCTGTGTGATTTGGGCACTATCGTTCATATTCTCTATACCAGTGGCGCAACACCAGATACTTACTGACCACCCGGAAGCGCCGAACAGTTCGTTCTGCTGGGAAGCGTGGTACGCAAGCGCTTCCAAACACACCTACAAAGTCACTATTTTAGTCATTGGCTATCTGTTGCCGTTGGGGTTGATCATATGCTGCTATGCGAAGGTGTTATTCCATCTCCACAAGAAGATGAAGAATATGTCCAAGAAATCAGAACGCTCAAAAAGAAAGacaGCCCAGACGGTCCTCCTGGTGGTCGCAGCCTTCCTGACCTGTTGGATGCCTCATCACATCATCGCCATGtgggtggagtttggagtgttcCCGCTCAACGACGCCTCCTTCGCGTTACGGATCATCTCCCACTGCCTGGCGTACGGGAACTCCTGCATCAACCCCATCCTGTACGCCTTTCTGTCAGAGAACTTCCGGAAGGCCTGTCGCCAGGTGTTCACCTGCCGGTTCCTCTATCCTCCACCCCCACAGGAGAAGGTGGTGCGAATCCGAATGGAGAACTTCTCAA

Function

NR:

description
PREDICTED: galanin receptor type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964493.1 False 2561 mRNA 0.45 3 5043780 5086440
TU2278677 True 581 TUCP 0.52 3 5045006 5085686

Neighbor

gene id symbol gene type direction distance location
LOC110525056 LOC106592677 coding downstream 68490 4973789 ~ 4975290 (-)
LOC110526851 vps13c coding downstream 71672 4718652 ~ 4972108 (-)
LOC118944456 NA coding downstream 302033 4739916 ~ 4741747 (-)
LOC118944435 LOC106588010 coding downstream 343296 4439833 ~ 4700484 (-)
LOC110498670 anx2a coding downstream 652787 4370382 ~ 4390993 (-)
LOC110515681 agrp1 coding upstream 57291 5143731 ~ 5147310 (-)
LOC118944412 LOC100135822 coding upstream 162839 5249279 ~ 5301650 (-)
usp8 LOC106592072 coding upstream 576136 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 663086 5749526 ~ 5761005 (-)
LOC110514841 LOC106593544 coding upstream 690582 5777022 ~ 5793342 (-)
G1991690 NA non-coding downstream 55387 4987721 ~ 4988393 (-)
G1991688 NA non-coding downstream 70066 4973265 ~ 4973714 (-)
G1991650 NA non-coding downstream 78975 4963447 ~ 4964805 (-)
G1991649 NA non-coding downstream 84242 4958934 ~ 4959538 (-)
G1991646 NA non-coding downstream 86012 4951526 ~ 4957768 (-)
G1991711 NA non-coding upstream 10747 5097187 ~ 5098290 (-)
G1991722 NA non-coding upstream 37687 5124127 ~ 5124802 (-)
G1991807 NA non-coding upstream 41363 5127803 ~ 5210329 (-)
G1991806 NA non-coding upstream 44000 5130440 ~ 5131153 (-)
G1991813 NA non-coding upstream 56233 5142673 ~ 5143646 (-)
G1991436 NA other downstream 455910 4586727 ~ 4587870 (-)
G1991846 NA other upstream 171282 5257722 ~ 5259782 (-)
G1992375 NA other upstream 621828 5708268 ~ 5708684 (-)
G1992485 NA other upstream 899991 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 1310604 6391414 ~ 6444276 (-)
G1994075 NA other upstream 2302805 7389245 ~ 7389568 (-)
G1991382 NA other downstream 570742 4473753 ~ 4474264 (-)
G1991381 NA other downstream 571389 4473282 ~ 4473617 (-)

Expression


Co-expression Network