LOC110515681 (agrp1)


Basic Information

Item Value
gene id LOC110515681
gene name agrp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5143731 ~ 5147310 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964549.1
GCCGTCAGTGAAGCAGCCATCAGTGAAGCAGCACTCAGTGAAGCAGTGAAGCAGCCATCAGTGAAGCAGCACTCAGTGAAGCAGCACTCAGCGAAGCGTTGTGTTGTATCAGCATGGTCAACTCAGTATTCCCATACTGCTGGACCCTGTGCCTGATCCAGCTGGCTACAGGACTGGTTCATGGAAACGTTCGTCTAGACGACTCCCATCCCGGCCTCAGACTCACCGACGATTCCTTCCTCTCCGATATAGGTAAAGCCTCTCTCTCTAGAGGGGATCCTGTGGGTTTCCGCTTAGagtctgaggaggaagaggagaaggaggaggagctgcTGATGGACCTGGAAACCTACGATGAGGATGTTGCTGAGGTGATGCAGCTGCAGAGCAGGGCCATGCGTTCTCCCCGTCGCTGTATCCCCCACCAGCAGTCCTGTCTGGGTAACACGCTGCCCTGCTGCGATCCCTGCGATACCCGCTACCCCCGAATGTTCGGCTCCATCTGCTACTGCCGTCGGACGGCCTGCGCCGGGGCTCACCGGCGTCCCTAAAACACTCCTAGAAAACCCTCTACGGCCCCCTCCTCTCACGGTGGGGCCCCTTTCTCTGCCAGTCTACAGTCAGTATCTAATTCATATCCGCAAGGCTTGATTTTATGAGCACGCAAACACAGACTATACATCCCAGGATGCATCAGTGAGACCGGCCAATAGGACACTCTCGTTGTATTTTCTTCTTGATGTTAACTCTggttgtgttttatttttattttattttttccccGATAGGTTAGATGGATGTTACGTTGGGTGTACATTTATCGTTCAATGAAAGTCAAAAGACAAATCAATCTCTAAAAAGGTAATATAATTGTCTAAAAAAAAATTGGGCTAAGatcattttttttgttaattaattTTAATCTTAAAAAAAACTGGGaacatatttatatttttaaagaGACCAGAATGTAAAATACTTACATTACTCAAATCAAAAGTGGACATTTAAAGTTGTGTTTATTGATTTTAAATAGTGAATCAGGATCCGTATGTTCATCATGTGCCCAGAGTCTTAACAGTAGTCTAATTGTGAGGCAGAGTTTAACTGTTTCTGCTACGTGGTTTAAGACTTCAGTATGTGAAACTCGCATaatgaattatatatatatatttttaaatacctgtagttgacaatatatatatattttttcatggaAATTCCATAATAGGGAAACAGCTTTTTATTAAAAACAATGGTAATCAATTGGTATAGCCATTATTTTGAAAGTCAAACACTCTCTCTAGGTAAGTTAAAGAAATCAGTGCAAATAGTAATTTATTGTATCTTATGaatgaaaatgaaataaaaaaaagttattaT

Function

NR:

description
agouti related protein-1 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964549.1 True 1383 mRNA 0.42 3 5143731 5147310

Neighbor

gene id symbol gene type direction distance location
LOC110515683 LOC105025469 coding downstream 57291 5043780 ~ 5086440 (-)
LOC110525056 LOC106592677 coding downstream 168441 4973789 ~ 4975290 (-)
LOC110526851 vps13c coding downstream 171623 4718652 ~ 4972108 (-)
LOC118944456 NA coding downstream 401984 4739916 ~ 4741747 (-)
LOC118944435 LOC106588010 coding downstream 443247 4439833 ~ 4700484 (-)
LOC118944412 LOC100135822 coding upstream 101969 5249279 ~ 5301650 (-)
usp8 LOC106592072 coding upstream 515266 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 602216 5749526 ~ 5761005 (-)
LOC110514841 LOC106593544 coding upstream 629712 5777022 ~ 5793342 (-)
LOC110519162 s27a2 coding upstream 647778 5795088 ~ 5816747 (-)
G1991813 NA non-coding downstream 85 5142673 ~ 5143646 (-)
G1991806 NA non-coding downstream 12578 5130440 ~ 5131153 (-)
G1991722 NA non-coding downstream 18929 5124127 ~ 5124802 (-)
G1991711 NA non-coding downstream 45441 5097187 ~ 5098290 (-)
G1991699 NA non-coding downstream 86588 5056144 ~ 5057143 (-)
G1991823 NA non-coding upstream 37184 5184494 ~ 5185780 (-)
G1991824 NA non-coding upstream 42864 5190174 ~ 5190415 (-)
G1991808 NA non-coding upstream 60333 5207643 ~ 5209312 (-)
G1991834 NA non-coding upstream 68198 5215508 ~ 5268097 (-)
G1991850 NA non-coding upstream 121380 5268690 ~ 5269595 (-)
G1991436 NA other downstream 555861 4586727 ~ 4587870 (-)
G1991846 NA other upstream 110412 5257722 ~ 5259782 (-)
G1992375 NA other upstream 560958 5708268 ~ 5708684 (-)
G1992485 NA other upstream 839121 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 1249734 6391414 ~ 6444276 (-)
G1994075 NA other upstream 2241935 7389245 ~ 7389568 (-)

Expression


Co-expression Network