LOC118944412 (LOC100135822)


Basic Information

Item Value
gene id LOC118944412
gene name LOC100135822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5249279 ~ 5301650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963437.1
GGACAcacagcagcacagagagagagatagaaagacagagagatagagagagagagacagacagacagagttgcAGTGCTGAGAACTGAGAGGAACTGAGACAACTCAACTCCCTCTGCTCGTGCTTCCTTCCAGCCAATGGAAGACTACTTAGACTGGATCTACATGGGGGTGATGTCTGCGTTTGTCGGAGGGGCCATGAAGAAGGTCCTGGCGTCCCACGTCAGCGCGGCCCCGACCGTGGTGGCCTGGCTGGGGGTCACCTTACTAGTGGAGAGGCTGTGGTTCTTCTGTGTGCCTGCTGTCCTGGTGTTGGCTGCCCTCTGCCTCGCCTGCTGTCTATACTCTGTCAGGACAGCCCCAGCACCCACTCTGCCTGTCCAGGGCAAGGCTGTCTTCATCACAGGCTGTGACACAGGCTTCGGGAAGGCTGCAGCGCGGCGTCTGGACGCCCAGGGTTTTGAGGTGTTTGCTACGGTGTTGGATCTGTGTGGGGAGGGAGCCAAGGAGCTCCAGAAGACCTGCTCCCCTCATCTCACCCTGCTACAGGTGGACATCACCCAGCCACAGCAGGTCCAACAGGCTCTTCTAGACACCAAGGCCAAACTGGGCCTCAGAGgtctgtggGGCTTGGTGAATAATGCAGGAGTATGTGTTAACTTCGGGGATGCAGAGTTGTCTCTGATGTCTAACTACCGTGGCTGTATGGAGGTGAACTTCTTTGGGACTCTGAACGTCACCAAGACATTCCTGCCTCTGCTGCGTCAGGCCAAGGGACGCATCGTCACAATCTCCAGCCCTGCAGGAGAGCAGCCGTTCCCCTGTCTAGCAGCGTACGGAGCCTCCAAGGCAGCTCTCAACCTGTTCATCAACACACTGCGCCACGAAATGGAACCCTGGGGGGTCAAAGTGTCCACCATACTGCCATCCTCATACAAGACAGGTCAGTCCGGTAACCAGGAGTACTGGGAGAATCAGTACAAGAGCCTGATCCACAACCTGTCCACAGGCCTGCTGGAGGAGTACGGGGAAGACTACACGCACGAGACCAAGGAGCTCTTCCAACACTTCGCCCAGTCGGCTAACGAGGACCTGTCACCAGTCATCAACACCATCAGCGAGGCGCTGCTCTCCCCCAGGCCCCTGGTCCGATACTACGCTGGGCCCGGCGTGGGCCTCATGAACTTCGTTTATAGTTATTTCCCTCTGAGTCTCTCAGACAAGTTCCTCCAGAGACTATTTGTCCAGAAGAAGATCATCCCACGAGCGCTGAGGaaagagaacaacaacaacaacaacaacatcaacaacaacgtGGAGAAGATAAAGAAGTAAAACAATGagatgtgtgtttgtttttttaagACGGCAGACACCAACATAGCTGGCACCAACACGGCAGACACCAACACAGCTGGCACCAACACGTCTGGCACCAACATGTCTGGCACCAACACGTCTGGCACCAACACGGCAGACACCAACACAGCTGGCACCAACACGTCCGTCACCAACACGTCTGGCACCAACACGTCTGGCACCAACACGGCAGACACCAACACAGCTGGCACCAACACGTCCGTCACCAACACGTCTGGCACCAACACGTCTGGCACCAACATGATGGCACCAACACGATGGCACCAACACGTCTGGCACCAACACGGCTGGCACCAACACGATGGCACCAACACGTCTGGCACCAACACGATGGCACCAACACGTCTGGCACTAACACGATGGCACCAACACGATGGCACCAACACGGCTGGCAGCAACACGGCCGGCACCAACACGGCTGGCGCCAACACAATGGCACCAACACGATGGCACCAACACGATGGCACCAACACGATGGCACCAACACGTCTGGCACCAACATGGCTGGCACCAACACGGTGGCACCAACACGATGGCACCAACACGATGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGATGGCACCAACACGGCTGGCACCAACATGAATGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGGCAGACACCAACACGGCTGGCACCAACACGAATGGCACCAACACGGTTGGCACCAACACGGCTGGCACCAACATGGCTGGCACCAACACGATGGCACCAACACGATGGCACCAACACGATGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGACTGGCACCACAGAGCTCTGTAAATACACCATTCTGTCACATCCCCATGGAGCACCTGAATTCAattataaaaaaacatttcaattGCAGCCTGGTATATTTGCTGATGTTATTTTTAATTCGAACATTTCGTCGTTGTTCATTTCTTTGTGTTGTATTTTTCACTCCACTGAATGTTCTTCTTCAATCAGAGTAGCTATGCCAGTTTCATTTCATGAATCACTGAAAACTGTGAATTTTACTATAACAAATATTCTTACAAATATTgttaaatttttttatttttttcactcaTTTGTTCACCTAACTTTGGTAATATTAAAAGttgactttttaaaaa
>XR_005039675.1
GGACAcacagcagcacagagagagagatagaaagacagagagatagagagagagagacagacagacagagttgcAGTGCTGAGAACTGAGAGGAACTGAGACAACTCAACTCCCTCTGCTCGTGCTTCCTTCCAGCCAATGGAAGACTACTTAGACTGGATCTACATGGGGGTGATGTCTGCGTTTGTCGGAGGGGCCATGAAGAAGGTCCTGGCGTCCCACGTCAGCGCGGCCCCGACCGTGGTGGCCTGGCTGGGGGTCACCTTACTAGTGGAGAGGCTGTGGTTCTTCTGTGTGCCTGCTGTCCTGGTGTTGGCTGCCCTCTGCCTCGCCTGCTGTCTATACTCTGTCAGGACAGCCCCAGCACCCACTCTGCCTGTCCAGGGCAAGGCTGTCTTCATCACAGGCTGTGACACAGGCTTCGGGAAGGCTGCAGCGCGGCGTCTGGACGCCCAGGGTTTTGAGGTGTTTGCTACGGTGTTGGATCTGTGTGGGGAGGGAGCCAAGGAGCTCCAGAAGACCTGCTCCCCTCATCTCACCCTGCTACAGGTGGACATCACCCAGCCACAGCAGGTCCAACAGGCTCTTCTAGACACCAAGGCCAAACTGGGCCTCAGAGgtctgtggGGCTTGGTGAATAATGCAGGAGTATGTGTTAACTTCGGGGATGCAGAGTTGTCTCTGATGTCTAACTACCGTGGCTGTATGGAGGTGAACTTCTTTGGGACTCTGAACGTCACCAAGACATTCCTGCCTCTGCTGCGTCAGGCCAAGGGACGCATCGTCACAATCTCCAGCCCTGCAGGAGAGCAGCCGTTCCCCTGTCTAGCAGCGTACGGAGCCTCCAAGGCAGCTCTCAACCTGTTCATCAACACACTGCGCCACGAAATGGAACCCTGGGGGGTCAAAGTGTCCACCATACTGCCATCCTCATACAAGACAGGTCAGTCCGGTAACCAGGAGTACTGGGAGAATCAGTACAAGAGCCTGATCCACAACCTGTCCACAGGCCTGCTGGAGGAGTACGGGGAAGACTACACGCACGAGACCAAGGAGCTCTTCCAACACTTCGCCCAGTCGGCTAACGAGGACCTGTCACCAGTCATCAACACCATCAGCGAGGCGCTGCTCTCCCCCAGGCCCCTGGTCCGATACTACGCTGGGCCCGGCGTGGGCCTCATGAACTTCGTTTATAGTTATTTCCCTCTGAGTCTCTCAGACAAGTTCCTCCAGAGACTATTTGTCCAGAAGAAGATCATCCCACGAGCGCTGAGGaaagagaacaacaacaacaacaacaacatcaacaacaacgtGGAGAAGATAAAGAAGTAAAACAATGagatgtgtgtttgtttttttaaggtaaaaaaaaaaagtggaagCTGTAGGACCCACTTACGTCAGGTACAACACGCACATCGTGTTGTTGTCTATTTTTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCACATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCACATTGAAGGACTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCACATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCACATTGAAGGGCTCATTATATTGGTGTTCACATTGAAGAGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATGGGTGTTCACATTGAAGGGCTCATTATATTGGTGTTCATATTGAAGGGCTCATTATATTGGTGTTCACATTGAAGGGCTCAATATATTGGTGTTCACATTGAAGGGGTCATTGAAGATGAGTATTTGAGTGGCTTTCCCTCCCGGTAGACGGCAGACACCAACATAGCTGGCACCAACACGGCAGACACCAACACAGCTGGCACCAACACGTCTGGCACCAACATGTCTGGCACCAACACGTCTGGCACCAACACGGCAGACACCAACACAGCTGGCACCAACACGTCCGTCACCAACACGTCTGGCACCAACACGTCTGGCACCAACACGGCAGACACCAACACAGCTGGCACCAACACGTCCGTCACCAACACGTCTGGCACCAACACGTCTGGCACCAACATGATGGCACCAACACGATGGCACCAACACGTCTGGCACCAACACGGCTGGCACCAACACGATGGCACCAACACGTCTGGCACCAACACGATGGCACCAACACGTCTGGCACTAACACGATGGCACCAACACGATGGCACCAACACGGCTGGCAGCAACACGGCCGGCACCAACACGGCTGGCGCCAACACAATGGCACCAACACGATGGCACCAACACGATGGCACCAACACGATGGCACCAACACGTCTGGCACCAACATGGCTGGCACCAACACGGTGGCACCAACACGATGGCACCAACACGATGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGATGGCACCAACACGGCTGGCACCAACATGAATGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGGCAGACACCAACACGGCTGGCACCAACACGAATGGCACCAACACGGTTGGCACCAACACGGCTGGCACCAACATGGCTGGCACCAACACGATGGCACCAACACGATGGCACCAACACGATGGCACCAACACGGCTGGCACCAACACGGCTGGCACCAACACGACTGGCACCACAGAGCTCTGTAAATACACCATTCTGTCACATCCCCATGGAGCACCTGAATTCAattataaaaaaacatttcaattGCAGCCTGGTATATTTGCTGATGTTATTTTTAATTCGAACATTTCGTCGTTGTTCATTTCTTTGTGTTGTATTTTTCACTCCACTGAATGTTCTTCTTCAATCAGAGTAGCTATGCCAGTTTCATTTCATGAATCACTGAAAACTGTGAATTTTACTATAACAAATATTCTTACAAATATTgttaaatttttttatttttttcactcaTTTGTTCACCTAACTTTGGTAATATTAAAAGttgactttttaaaaa

Function

NR:

description
11-beta-hydroxysteroid dehydrogenase

GO: NA

KEGG:

id description
K00071 HSD11B2; corticosteroid 11-beta-dehydrogenase isozyme 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963437.1 False 2561 mRNA 0.54 6 5249279 5301650
XR_005039675.1 True 3323 mRNA 0.50 6 5249279 5301650

Neighbor

gene id symbol gene type direction distance location
LOC110515681 agrp1 coding downstream 101969 5143731 ~ 5147310 (-)
LOC110515683 LOC105025469 coding downstream 162839 5043780 ~ 5086440 (-)
LOC110525056 LOC106592677 coding downstream 273989 4973789 ~ 4975290 (-)
LOC110526851 vps13c coding downstream 277171 4718652 ~ 4972108 (-)
LOC118944456 NA coding downstream 507532 4739916 ~ 4741747 (-)
usp8 LOC106592072 coding upstream 360926 5662576 ~ 5697259 (-)
LOC110514656 LOC106593544 coding upstream 447876 5749526 ~ 5761005 (-)
LOC110514841 LOC106593544 coding upstream 475372 5777022 ~ 5793342 (-)
LOC110519162 s27a2 coding upstream 493438 5795088 ~ 5816747 (-)
LOC110517106 fsd2 coding upstream 747704 6049354 ~ 6099236 (-)
G1991807 NA non-coding downstream 38950 5127803 ~ 5210329 (-)
G1991808 NA non-coding downstream 39967 5207643 ~ 5209312 (-)
G1991824 NA non-coding downstream 58864 5190174 ~ 5190415 (-)
G1991823 NA non-coding downstream 63499 5184494 ~ 5185780 (-)
G1991813 NA non-coding downstream 105633 5142673 ~ 5143646 (-)
G1991877 NA non-coding upstream 79210 5380860 ~ 5381295 (-)
G1991878 NA non-coding upstream 85661 5387311 ~ 5387815 (-)
G1991879 NA non-coding upstream 91123 5392773 ~ 5393119 (-)
G1991894 NA non-coding upstream 126458 5428108 ~ 5428714 (-)
G1991901 NA non-coding upstream 136709 5438359 ~ 5438581 (-)
G1991436 NA other downstream 661409 4586727 ~ 4587870 (-)
G1991382 NA other downstream 775015 4473753 ~ 4474264 (-)
G1991381 NA other downstream 775662 4473282 ~ 4473617 (-)
G1992375 NA other upstream 406618 5708268 ~ 5708684 (-)
G1992485 NA other upstream 684781 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 1095394 6391414 ~ 6444276 (-)
G1994075 NA other upstream 2087595 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 2349736 7647283 ~ 7665132 (-)

Expression


Co-expression Network