LOC110514656 (LOC106593544)


Basic Information

Item Value
gene id LOC110514656
gene name LOC106593544
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5749526 ~ 5761005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963394.1
ACATGCGTCCAAAGGTCGTGGAGAGTTGTGGATTGGAGGTGTTGCAATAACCTGTTACTTTCTTAAACAGCACGGCCAAGAAGACAATACCTTTTATTGACAATCACAAAGAAGTAGACCTTAACTTTCAATATGTACGTGCTATTATATACCATTTTGGCAGGATTGGCTATACTGCCACTCTTCCTTTATCTCAGAAATCCTTATTTTACGCAGGACCTGCGCTATACAGTAACTTGCATCTTACTCGGGTTACGAATTAACAGAATCAAGAGGAGCAAACCGTTCTACAGCATGCTGGACTGTTTTCTCGATAAGGTCAAAAAACACCCCAACAAACAGTTTATTGTATTCGAGAAGAGTTCGTATACATACCGGGATGTTGACAAGCAGAGCAACAAGTTGGCCCGGGCGCTCTCACAGCACGCCAGCGTGAAGGAAGGGGACACTGTCGCGCTCTTCATGGGTAACGAGCCCATGTATGTGTTTATCTGGCTGGCCCTGGCTAAACTTGGATGTACTGCCGCTCTGCTCAACTACAACATCAGGTCCAAGTCCTTATTGCACTGTTTCACCTGCTGCGGAACCAACGTGCTCCTGGCTGCTTCAGagTTGCGTGGAGCGGTAGAGGAGGTTCTCCCCACACTGAGGGAGCAGAGTGTAAGTGTGTTTGTgctgggtgaggaggaggagaagtgtgTGACGGAGGGAGTGAATACTCTGAGCAGCAGCAGAATACAGCAGGCCTCAGATCAACCTCTGGACCCACAGCTCAGGTCAAAGGTCACCTTAAAGAGCCCTGCCCTCTACATCTATACGTCAGGAACTACAGGTCTGCCGAAGGCTGCGGTGATCACACATGAGAGGCTGTACATGGCCTCCTCAATGCAGGCCATCTCAGGTGTGGTCTCTGATGATGTCATCTACATCTACCTGCCTCTCTACCACACCGCCGGCTTCATAATGGGTTTAACTGGAGCCATAGAGAGagGCAGCACCGTTGTCCTGAGGCGtaaattctctgcctctaacttcTGGGATGACTGCAGGAAACACAAGGTGACAGTGATCCAGTACATAGGAGAGATCATGAGGTACCTCTGTAACTCACCCAAGaaAGATAATGACAGGCATCACAAGGTACGTCTGGCCCTGGGTAACGGGCTTAGAGCAGACACCTGGTCAGAGTTCCTGCAGCGTTTTGGTGACATCCGTGTCTGTGAATGTTACGGAGCCACAGAGGGAAACGTCGGCTTCATCAACTACGTCGGGAAAGTCGGAGCGATTGGCAAAGAGCACTTCCTTCATAAAGCAAACTTCTCCTACGTTCTGATTCAgtatgacacagagagagaggaacctgTCAAAGACTCTAGAGGTTTCTGTATCAAAGTCCCTAAAGGAGAAACTGGATTGCTGGTTGCCAAGATTACAGCGCAGGCTCCGTTTAGTGGCTATGCTAATAAccagcagcagacagacaggaagaagcTGAGAGATGTGTTTGTTAAGGGAGATCTGTACTTCAACAGTGGAGACCTGCTGAGGATCGACCACGAGGGCTTTGTTTACTTCATGGACCGCATCGGAGACACCTTCAGGTGGAAAGGAGAGAACGTGGCCACCACGGAGGTGACTGAGCACCTGATCATGGTGGAATGTATCGAAGAAGCCAACGTCTACGGAGTCAAGGTTCCAGGACACGAGGGGAGGGTTGGAATGGCAGCGATCAAACTGAAAGATGACATGGAGTTTGACAGTAAAGCCACGCTGGAGCACGTCAAGACCTCCCTGCCCAGCTACGCTCGACCACGCTTCATACGCATACAGAATTCCCTGGCTGTGACTGGAACATTCAAGCAGATTAAGGTGAAGCTAGTCGAAGAGGGATTCAACCCATCCATGATGCAGGATCGATTATACTACCTGGAGGACAGTAAGGGATACATCCCCATGACACAGGAGATGTTCCACTCTATTTCTGATGGAAAGATACACTtgtgattgattttatttttttaacagatTTTCTAACTGTTAATCTCTGATTTTAAAATTAACTGTCAAATTATTCATCTGATGTACATTTTATGACTATTGAGAAAAAATGTGAAAATTTAAACCTGTATGGGTCATTTGTAAATAAATAGATATAGATTGATTTTCTAATAAATACAAACAAAACATATTGTA
>XR_005039665.1
ACATGCGTCCAAAGGTCGTGGAGAGTTGTGGATTGGAGGTGTTGCAATAACCTGTTACTTTCTTAAACAGCACGGCCAAGAAGACAATACCTTTTATTGACAATCACAAAGAAGTAGACCTTAACTTTCAATATGTACGTGCTATTATATACCATTTTGGCAGGATTGGCTATACTGCCACTCTTCCTTTATCTCAGAAATCCTTATTTTACGCAGGACCTGCGCTATACAGTAACTTGCATCTTACTCGGGTTACGAATTAACAGAATCAAGAGGAGCAAACCGTTCTACAGCATGCTGGACTGTTTTCTCGATAAGGTCAAAAAACACCCCAACAAACAGTTTATTGTATTCGAGAAGAGTTCGTATACATACCGGGATGTTGACAAGCAGAGCAACAAGTTGGCCCGGGCGCTCTCACAGCACGCCAGCGTGAAGGAAGGGGACACTGTCGCGCTCTTCATGGGTAACGAGCCCATGTATGTGTTTATCTGGCTGGCCCTGGCTAAACTTGGATGTACTGCCGCTCTGCTCAACTACAACATCAGGTCCAAGTCCTTATTGCACTGTTTCACCTGCTGCGGAACCAACGTGCTCCTGGCTGCTTCAGagTTGCGTGGAGCGGTAGAGGAGGTTCTCCCCACACTGAGGGAGCAGAGTGTAAGTGTGTTTGTgctgggtgaggaggaggagaagtgtgTGACGGAGGGAGTGAATACTCTGAGCAGCAGCAGAATACAGCAGGCCTCAGATCAACCTCTGGACCCACAGCTCAGGTCAAAGGTCACCTTAAAGAGCCCTGCCCTCTACATCTATACGTCAGGAACTACAGGTCTGCCGAAGGCTGCGGTGATCACACATGAGAGGCTGTACATGGCCTCCTCAATGCAGGCCATCTCAGGTGTGGTCTCTGATGATGTCATCTACATCTACCTGCCTCTCTACCACACCGCCGGCTTCATAATGGGTTTAACTGGAGCCATAGAGAGagGCAGCACCGTTGTCCTGAGGCGtaaattctctgcctctaacttcTGGGATGACTGCAGGAAACACAAGGTGACAGTGATCCAGTACATAGGAGAGATCATGAGGTACCTCTGTAACTCACCCAAGaaAGATAATGACAGGCATCACAAGGTACGTCTGGCCCTGGGTAACGGGCTTAGAGCAGACACCTGGTCAGAGTTCCTGCAGCGTTTTGGTGACATCCGTGTCTGTGAATGTTACGGAGCCACAGAGGGAAACGTCGGCTTCATCAACTACGTCGGGAAAGTCGGAGCGATTGGCAAAGAGCACTTCCTTCATAAAGCAAACTTCTCCTACGTTCTGATTCAgtatgacacagagagagaggaacctgTCAAAGACTCTAGAGGTTTCTGTATCAAAGTCCCTAAAGGAGAAACTGGATTGCTGGTTGCCAAGATTACAGCGCAGGCTCCGTTTAGTGGCTATGCTAATAAccagcagcagacagacaggaagaagcTGAGAGATGTGTTTGTTAAGGGAGATCTGTACTTCAACAGTGGAGACCTGCTGAGGATCGACCACGAGGGCTTTGTTTACTTCATGGACCGCATCGGAGACACCTTCAGGTGGAAAGGAGAGAACGTGGCCACCACGGAGGTGACTGAGCACCTGATCATGGTGGAATGTATCGAAGAAGCCAACGTCTACGGAGTCAAGGTTCCAGGACACGAGGGGAGGGTTGGAATGGCAGCGATCAAACTGAAAGATGACATGGAGTTTGACAGTAAAGCCACGCTGGAGCACGTCAAGACCTCCCTGCCCAGCTACGCTCGACCACGCTTCATACGCATACAGGTGATCCCGTGGAAATAATGTCCTAATTACAATCATCGTCATGACACCTTTTATTTGCACTCAAAGCCACCGTCTGGGACATGTTGAAGAGATTCCCTGATCCCAGAATTCCCTGGCTGTGACTGGAACATTCAAGCAGATTAAGGTGAAGCTAGTCGAAGAGGGATTCAACCCATCCATGATGCAGGATCGATTATACTACCTGGAGGACAGTAAGGGATACATCCCCATGACACAGG

Function

NR:

description
very long-chain acyl-CoA synthetase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00666 K00666; fatty-acyl-CoA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963394.1 False 2193 mRNA 0.47 10 5749526 5761005
XR_005039665.1 True 2069 mRNA 0.49 10 5749756 5761005

Neighbor

gene id symbol gene type direction distance location
usp8 LOC106592072 coding downstream 52267 5662576 ~ 5697259 (-)
LOC118944412 LOC100135822 coding downstream 447876 5249279 ~ 5301650 (-)
LOC110515681 agrp1 coding downstream 602216 5143731 ~ 5147310 (-)
LOC110515683 LOC105025469 coding downstream 663086 5043780 ~ 5086440 (-)
LOC110525056 LOC106592677 coding downstream 774236 4973789 ~ 4975290 (-)
LOC110514841 LOC106593544 coding upstream 16017 5777022 ~ 5793342 (-)
LOC110519162 s27a2 coding upstream 34083 5795088 ~ 5816747 (-)
LOC110517106 fsd2 coding upstream 288349 6049354 ~ 6099236 (-)
LOC118944399 LOC106562864 coding upstream 384543 6145548 ~ 6298226 (-)
LOC118944448 LOC106562861 coding upstream 584284 6345289 ~ 6352326 (-)
G1992389 NA non-coding downstream 3215 5745761 ~ 5746311 (-)
G1992360 NA non-coding downstream 3884 5744153 ~ 5745642 (-)
G1992388 NA non-coding downstream 8867 5732424 ~ 5740659 (-)
G1992385 NA non-coding downstream 23370 5725926 ~ 5726156 (-)
G1992381 NA non-coding downstream 29695 5719204 ~ 5719831 (-)
G1992358 NA non-coding upstream 26380 5787385 ~ 5788324 (-)
G1992400 NA non-coding upstream 30992 5791997 ~ 5792667 (-)
G1992424 NA non-coding upstream 89544 5850549 ~ 5851406 (-)
G1992437 NA non-coding upstream 107252 5868257 ~ 5868949 (-)
G1992375 NA other downstream 40842 5708268 ~ 5708684 (-)
G1991846 NA other downstream 489744 5257722 ~ 5259782 (-)
LOC110526851 vps13c other downstream 895771 4718652 ~ 4972108 (-)
G1991436 NA other downstream 1161656 4586727 ~ 4587870 (-)
G1992485 NA other upstream 225426 5986431 ~ 5988773 (-)
LOC118936596 LOC106591161 other upstream 636039 6391414 ~ 6444276 (-)
G1994075 NA other upstream 1628240 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 1890381 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 1988290 7744309 ~ 7751407 (-)

Expression


Co-expression Network