LOC110514841 (LOC106593544)


Basic Information

Item Value
gene id LOC110514841
gene name LOC106593544
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5777022 ~ 5793342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963392.1
GGCCTAGAAGGAGACACATTTTATTGACAATCACAAAGAAGTAGACCTTAACTTTCAATATGTACGTGTTATTATATACCATATTGGCAGGATTGGCTATACTGCCACTCTTCCTTTATCTCAGAAATCCTTATTTTACGCAGGACCTGCGCTACACAGTAACTTGCGTCTTACTCTGGTTGCGAATTAACAGAATCAAGAGGAGCAAACCGTTCTACAGCATGCTGGACTGTTTTCTCGATAAGGTCAAAAAACACCCCAACAAACAGTTTATTGTATTCGAGAAGAGTTCGTATACATACCGGGACGTTGACAAGCAGAGCAACAAGTTGGCCCGGGCGCTCTCACAGCACGCCAGCGTGAAGGAAGGGGACACTGTCGCTCTCTTCATGGGTAACGAGCCCATGTATGTGTTTATCTGGCTGGCCCTGGCTAAACTTGGATGTAGAGCCGCTCTGCTCAACTACAACATCAGGTCCAAGTCCTTATTGCACTGTTTCACCTGCTGTGGAACCAACGTGCTCCTGGCTGCTTCAGagTTGCGTGGAGCGGTAGAGGAGGTTCTCCCCACCCTGAGGGAGCAGAGTGTAAGTGTGTTTGTgctgggtgaggaggaggaggagaagtgtgTGACGGAGGGAGTGAATACtctgagcagcagcaggatacAGCAGGCCTCAGATCAACCTCTGGACCCACAGCTCAGGTCAAAGGTCACCTTAAAGAGCCCTGCCCTCTACATCTATACGTCAGGAACTACAGGTCTGCCGAAGGCTGCGGTGATCACACATGAGAAGCTGTACATGGCCTCCTCTATGCAGGCCATCTCAGGTGTGGCCTCTGATGATGTCATCTACATCTACCTGCCTCTCTACCACTCTGCCGGCTTCATAATGGGTTTGACTGGAGCCATAGAGAGAGGCAGCACCGTTGTCCTGAGGCGtaaattctctgcctctaacttcTGGGATGACTGCAGGAAACACAAGGTGACAGTGATCCAGTACATAGGAGAGATCATGAGGTACCTCTGTAACTCACCCAAGaaAGATAATGACAGGCATCACAAGGTACGTCTGGCCCTGGGTAACGGGCTTAGAGCAGACACCTGGTCAGAGTTCCTGCAGCGTTTTGGTGACATCCGTGTCTGTGAATGTTACGGAGCCACAGAGGGACACGTCGGCTTCATCAACTACGTCGGGAAAGTCGGAGCGATTGGCAAAGAGCACTTCTTTCATAAAGCAAACTTCTCCTACGTTCTGATTCAgtatgacacagagagagaggaacctgTCAAAGACTCTAGAGGTTTCTGTATCAAAGTCCCTAAAGGAGAAACTGGATTGCTGGTTGCCAAGATTACGGCGCAGGCTCCGTTTAGTGGCTATGCTAATAAccaggagcagacagacaggaagaagcTGAGAGATGTGTTTGTTAAGGGAGATCTGTACTTCAACAGTGGAGACCTGCTGAGGATCGACCACGAGGGCTTTGTTTACTTCATGGACCGCATCGGAGACACCTTCAGGTGGAAAGGAGAGAACGTGGCCACCACGGAGGTGACTGAGCACCTGATCATGGTGGAATGTATCGAAGAAGCCAACGTCTACGGTGTCAAGGTTCCAGGACACGAGGGCAGGGTTGGAATGGCAGCGATCAAACTGAAAGATGACATGGAGTTTGACAGTAAAGCCACGCTGGAGCACGTCAAGACCTCCCTGCCCAGCTACGCTCGACCACGCTTCATACGCATACAGAATTCCCTGGCTGTGACTGGAACGTTCAAGCAGATTAAGGTGAAGCTAGTCGAAGAGGGATTCAACCCATCCATGATGCAGGATCGATTATACTACCTGGAGGACAGTAAGGGATACATCCCCATGACACAGGAGATGTACCACTCTATTTCTGATGGAAAGATACACTTATGATTGATTTCATTTTTTTAACAGATTTTCTAACTGTTAATCTCTTATTTTAAAATTAACTGTCAAATTATTCATCTGATGTACATTTTATGACTATAGAAAAACAATGTGAAAATTGAAAACTGTATGAAAAcatttgtaaataaataaatatagattGATTttgtaataaatacaaaaaaacacattgtaTATTTA

Function

NR:

description
very long-chain acyl-CoA synthetase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00666 K00666; fatty-acyl-CoA synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963392.1 True 2129 mRNA 0.47 10 5777022 5793342

Neighbor

gene id symbol gene type direction distance location
LOC110514656 LOC106593544 coding downstream 16017 5749526 ~ 5761005 (-)
usp8 LOC106592072 coding downstream 79763 5662576 ~ 5697259 (-)
LOC118944412 LOC100135822 coding downstream 475372 5249279 ~ 5301650 (-)
LOC110515681 agrp1 coding downstream 629712 5143731 ~ 5147310 (-)
LOC110515683 LOC105025469 coding downstream 690582 5043780 ~ 5086440 (-)
LOC110519162 s27a2 coding upstream 1746 5795088 ~ 5816747 (-)
LOC110517106 fsd2 coding upstream 256012 6049354 ~ 6099236 (-)
LOC118944399 LOC106562864 coding upstream 352206 6145548 ~ 6298226 (-)
LOC118944448 LOC106562861 coding upstream 551947 6345289 ~ 6352326 (-)
LOC118936596 LOC106591161 coding upstream 598072 6391414 ~ 6444276 (-)
G1992389 NA non-coding downstream 30711 5745761 ~ 5746311 (-)
G1992360 NA non-coding downstream 31380 5744153 ~ 5745642 (-)
G1992388 NA non-coding downstream 36363 5732424 ~ 5740659 (-)
G1992385 NA non-coding downstream 50866 5725926 ~ 5726156 (-)
G1992381 NA non-coding downstream 57191 5719204 ~ 5719831 (-)
G1992424 NA non-coding upstream 57207 5850549 ~ 5851406 (-)
G1992437 NA non-coding upstream 74915 5868257 ~ 5868949 (-)
G1992438 NA non-coding upstream 77579 5870921 ~ 5872098 (-)
G1992447 NA non-coding upstream 96497 5889839 ~ 5891360 (-)
G1992375 NA other downstream 68338 5708268 ~ 5708684 (-)
G1991846 NA other downstream 517240 5257722 ~ 5259782 (-)
LOC110526851 vps13c other downstream 923267 4718652 ~ 4972108 (-)
G1991436 NA other downstream 1189152 4586727 ~ 4587870 (-)
G1992485 NA other upstream 193089 5986431 ~ 5988773 (-)
G1994075 NA other upstream 1595903 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 1858044 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 1955953 7744309 ~ 7751407 (-)

Expression


Co-expression Network