LOC110519162 (s27a2)


Basic Information

Item Value
gene id LOC110519162
gene name s27a2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 5795088 ~ 5816747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963740.1
GTTACAGTttaatcaactttcaaagcagaattactttgccATTGTTCATCGAATGCAGTGCatgatatacaattttgtagctcagtgtctctgcttttatccaatgtttATCCTCCTGCATTATTAAATACTCAATGCCACGCCCTCACTTTAAAAAAAACCATGTTTAGTCGAGTTAAGGCAAAGACAATACTGTACGTTGCCTGCAAAGACAATACTGTACGCTGTGAATCTACAATTCACCCAGAAGCATAGGAGCTCGACGTTGTGCTCAACAATGTACTTGGTTTCTATCCTTTTTGCCAGTTTGGCCATCACACCGCTAGTTCTTAAAACGTTCTTCCCTTACTTCTGGAAAGATGCATGGTACCTCGCGAACTTGGTTCGTATTTTGCTGAAGCTTGTTTTACGGAGGAGAAGAAAACCGTTGTTTTTGGTTTTGGACCGATTTTTGGAGCAGTCGGTCGCGCATGCCGACAGACCGTTCATCGTGTTTGAAAATAAAACCTATTCGTATCTGGACACGGACAGAAGAAGCAACAAAATAGCCAATGCTTTACAGAGGCACTCGACGCTGCGACCGGGGGATACCGTGGCTCTTTTTATGGGAAACGAACCTGCCTTCATCTTCACCTGGCTGGCCCTGGCCAAACTGGGATGTCCCGTAGCGTTTCTCAACCATAATATCAGATCTAGATCTCTGCTGCACTGCTTCAACTGTTGCAGCGCCAAGCTGCTCATAGCAGCCGAAGAGCTGCAGGAAGCGGTGGAGGAGGTGCTTCCATCCCTGAgggagcagggtgtgtgtgtctacctgatGACTAAACAGTGTGACACACCTGGCGTGGAGGGGTTCTCTGACCAGGTGGAGGAAGCATCGGACACACCTCTCCCTCAGGCCCTCCGCTCAGACATCACCTTCAAAAGCCCTGCTGTCTACATCTACACCTCTGGCACCACAGGTCTGCCTAAAGCAGCAGTAATTACTCAGAACCGGCTGCTGGTAGCCCTGGCCGTGCTGGACTCCACCGGTATCACaccaggtgatgtcatctacCTCAACCTGCCCCTCTACCACACCGCCGGCTTCCTCATCGGCTTCATAGGATCCATAGAGACAGGCTCCACCATCATTCTGAGGAGGAAGTTCTCAGCCTCTCAGTTCTGGGATGATTGCAGGAAGTACAACGTTACGGTGGTCCAGTACATAGGAGAGGTGTTACGCTACCTCTGTAACACACCCAAGAGAGACAACGACAGAGAGCACAAAGTCAGGCTGGCCATTGGTAACGGTGTGAGAGCAGAGATATGGAAGGAATTCCTGAACCGCTTTGGCAACATCTACGTGAGGGAGTTTTATGCTTCAACGGAGGGCAATGTGGGACTGATCAACTACACCGGGAAGATAGGAGCTGTCGGACGAGTCAACTACCTCCACCGGAAGCTGTTTCCTTATGCTCTGATTAAAtacgacacagagagagatgaaccaATCAGAGACTCTACCGGACTGTGTGTAGAAGCTCCTAAAGATGAAACAGGACTGTTGGTGTGCAAGATCACGAACATCACTCCTTTTGTTGGATACGCTAACAGCCagcagacagagaagaagagactgAGAGACGTGTTTCAGAAAGGAGATCTGTACTTTAACAGTGGAGACCTGCTGAAGATAGGCCAGGACAACTTTATTTACTTTCAGGATCGAGTCGGAGATACATTCAGGTGGAAAGGAGAGAATGTGGCCACAACTGAAGTAGCTGACATCCTCACCCTGATAGACTTTGTCCAAGAGGCAAATGTCTACGGTGTTCAAGTACCagGCAACGAGGGGAGGATAGGAATGGCTGCCGTCACGTTGAAGGGGGGAGAACAGTTTGATGGCAACAAAACGTTCAGCCATGTAGCCAGCTACCTACCGGCGTATGCACGGCCACGCTTCATACGCATCCAGAATGCGGTGGAGATGACGGGGACCTTCAAGCAGATGAAGGTGAGGTTAGTGGAGGAAGGTTTCGACCCGGCAGGCATCACAGACCCTCTGTACATCCTACAGGAGAGAAATCAGAGTTACACACCATTGACTGGCCAGATCTACGGCTCCATAGTGGCAGGCATCATCAAGCTGTGAACAGATCTGTGGTGATACTACTCTTGGGTCCTATACATTAGGGCATGCAATTGAAAACgtttcaaaaatgttttgcaacggaaaacaaaaaATGAGCATTacttagtccctccctgttttagtccacGCCAGCCCTCATTCTTTACCTGCGGCATCGTCTGAGACCGGCCATCCGGACAGCTAATGAAACTCAGGAGTATTTCTGtcagtaataaagcccttttgtgtggaaaatctcattctgattggctgggcctgtgTTAAAGTGATTTAAATGTTGAATGATAATGATGAAATAATTCCACTCTGAAACCTTATAactgtatgaaattgattagaattaTACAATTAATAGCTGATGGttttgtgtagttttagtcagtaaAATTATATATCTGGgagtgtagttttagtcagaattagggttAAACAATATCTGTACAATATGTCTTTATAGTATCTTAAACACAGACTCTCTGAGCAGAATTCAGTGCCGACCTGGCTAGAGGtttgggagaggacagggagtacttctcaaggtctccctaatctttgtcggctgggtaatgatacagtatgtgcgtaggatacctactgtttgtgtgtggaagtatgtgcgtagcataccaactgtttgtgtgtgaatgtaaGTGCATAAGGAGCCAGTATAAAGTGAATGGTTTTGTACAACGGACTAGCGCTCTCATgaataaacattttgactatcata
>XM_036963741.1
aaacgTGAGGTTACAGTttaatcaactttcaaagcagaattactttgccATTGTTCATCGAATGCAGTGCatgatatacaattttgtagctcagtgtctctgcttttatccaatgtttATCCTCCTGCATTATTAAATACTCAATGCCACGCCCTCACTTTAAAAAAAACCATGTTTAGTCGAGTTAAGGCAAAGACAATACTGTACGTTGCCTGCAAAGACAATACTGTACGCTGTGAATCTACAATTCACCCAGAAGCATAGGAGCTCGACGTTGTGCTCAACAATGTACTTGGTTTCTATCCTTTTTGCCAGTTTGGCCATCACACCGCTAGTTCTTAAAACGTTCTTCCCTTACTTCTGGAAAGATGCATGGTACCTCGCGAACTTGGTTCGTATTTTGCTGAAGCTTGTTTTACGGAGGAGAAGAAAACCGTTGTTTTTGGTTTTGGACCGATTTTTGGAGCAGTCGGTCGCGCATGCCGACAGACCGTTCATCGTGTTTGAAAATAAAACCTATTCGTATCTGGACACGGACAGAAGAAGCAACAAAATAGCCAATGCTTTACAGAGGCACTCGACGCTGCGACCGGGGGATACCGTGGCTCTTTTTATGGGAAACGAACCTGCCTTCATCTTCACCTGGCTGGCCCTGGCCAAACTGGGATGTCCCGTAGCGTTTCTCAACCATAATATCAGATCTAGATCTCTGCTGCACTGCTTCAACTGTTGCAGCGCCAAGCTGCTCATAGCAGCCGAAGAGCTGCAGGAAGCGGTGGAGGAGGTGCTTCCATCCCTGAgggagcagggtgtgtgtgtctacctgatGACTAAACAGTGTGACACACCTGGCGTGGAGGGGTTCTCTGACCAGGTGGAGGAAGCATCGGACACACCTCTCCCTCAGGCCCTCCGCTCAGACATCACCTTCAAAAGCCCTGCTGTCTACATCTACACCTCTGGCACCACAGGTCTGCCTAAAGCAGCAGTAATTACTCAGAACCGGCTGCTGGTAGCCCTGGCCGTGCTGGACTCCACCGGTATCACaccaggtgatgtcatctacCTCAACCTGCCCCTCTACCACACCGCCGGCTTCCTCATCGGCTTCATAGGATCCATAGAGACAGGCTCCACCATCATTCTGAGGAGGAAGTTCTCAGCCTCTCAGTTCTGGGATGATTGCAGGAAGTACAACGTTACGGTGGTCCAGTACATAGGAGAGGTGTTACGCTACCTCTGTAACACACCCAAGAGAGACAACGACAGAGAGCACAAAGTCAGGCTGGCCATTGGTAACGGTGTGAGAGCAGAGATATGGAAGGAATTCCTGAACCGCTTTGGCAACATCTACGTGAGGGAGTTTTATGCTTCAACGGAGGGCAATGTGGGACTGATCAACTACACCGGGAAGATAGGAGCTGTCGGACGAGTCAACTACCTCCACCGGAAGCTGTTTCCTTATGCTCTGATTAAAtacgacacagagagagatgaaccaATCAGAGACTCTACCGGACTGTGTGTAGAAGCTCCTAAAGATGAAACAGGACTGTTGGTGTGCAAGATCACGAACATCACTCCTTTTGTTGGATACGCTAACAGCCagcagacagagaagaagagactgAGAGACGTGTTTCAGAAAGGAGATCTGTACTTTAACAGTGGAGACCTGCTGAAGATAGGCCAGGACAACTTTATTTACTTTCAGGATCGAGTCGGAGATACATTCAGGTGGAAGGGAGAGAATCTATTATATTTAGTTGAGTTGAATTGACCCCTACAGGTGGAA
>TU2279803
TTTATAGTATCTTAAACACAGACTCTCTGAGCAGAATTCAGTGCCGACCTGGCTAGAGGtttgggagaggacagggagtacttctcaaggtctccctaatctttgtcggctgggtaatgatacagtatgtgcgtaggataccaactgtttgtgtgtgaatgtaaGTGCATAAGGAGCCAGTATAAAGTGAATGGTTTTGTACAACGGACTAGCGCTCTCATgaataaacattttgactatcata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963740.1 False 2864 mRNA 0.47 10 5795088 5816738
XM_036963741.1 False 1795 mRNA 0.48 8 5799992 5816747
TU2279803 True 244 lncRNA 0.42 2 5795088 5795367

Neighbor

gene id symbol gene type direction distance location
LOC110514841 LOC106593544 coding downstream 1746 5777022 ~ 5793342 (-)
LOC110514656 LOC106593544 coding downstream 34083 5749526 ~ 5761005 (-)
usp8 LOC106592072 coding downstream 97829 5662576 ~ 5697259 (-)
LOC118944412 LOC100135822 coding downstream 493438 5249279 ~ 5301650 (-)
LOC110515681 agrp1 coding downstream 647778 5143731 ~ 5147310 (-)
LOC110517106 fsd2 coding upstream 232607 6049354 ~ 6099236 (-)
LOC118944399 LOC106562864 coding upstream 328801 6145548 ~ 6298226 (-)
LOC118944448 LOC106562861 coding upstream 528542 6345289 ~ 6352326 (-)
LOC118936596 LOC106591161 coding upstream 574667 6391414 ~ 6444276 (-)
LOC118944398 NA coding upstream 577336 6394083 ~ 6397020 (-)
G1992400 NA non-coding downstream 2421 5791997 ~ 5792667 (-)
G1992358 NA non-coding downstream 6764 5787385 ~ 5788324 (-)
G1992389 NA non-coding downstream 48777 5745761 ~ 5746311 (-)
G1992360 NA non-coding downstream 49446 5744153 ~ 5745642 (-)
G1992388 NA non-coding downstream 54429 5732424 ~ 5740659 (-)
G1992424 NA non-coding upstream 33802 5850549 ~ 5851406 (-)
G1992437 NA non-coding upstream 51510 5868257 ~ 5868949 (-)
G1992438 NA non-coding upstream 54174 5870921 ~ 5872098 (-)
G1992447 NA non-coding upstream 73092 5889839 ~ 5891360 (-)
G1992449 NA non-coding upstream 82585 5899332 ~ 5899602 (-)
G1992375 NA other downstream 86404 5708268 ~ 5708684 (-)
G1991846 NA other downstream 535306 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 709402 5043780 ~ 5086440 (-)
LOC110526851 vps13c other downstream 941333 4718652 ~ 4972108 (-)
G1991436 NA other downstream 1207218 4586727 ~ 4587870 (-)
G1992485 NA other upstream 169684 5986431 ~ 5988773 (-)
G1994075 NA other upstream 1572498 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 1834639 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 1932548 7744309 ~ 7751407 (-)

Expression


Co-expression Network