LOC118944399 (LOC106562864)


Basic Information

Item Value
gene id LOC118944399
gene name LOC106562864
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 6145548 ~ 6298226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963249.1
GGCAGGACTGTTGAGAGCAGGTGGAAGCCGCACTGTGTCGCTACTGctgctctctgcctgcctctcacGAAACACTAACCCATTGGGGAGAGAGCTGAGAGCGCAGATCCGAGGAAAGGCAACTCCAGCGCAGCAGTCAAGGAATATTCAGCGAACATCATAACTTATTATTTTTTGAAAGCACAGCGTTTATCAGCCTTGCGGCTGCGGATAGAAGACACGGAACGGGTGGGATCATAAGTTGTCACCTCGTCTGAATAAATAAGTTAGGCTAATGAAATGGCATTAGGTTTTTCTGTGAACGCTTGACTATCAGGAGAATCGAAACGCCGCTCAGCTCGCGAGGGAGTGCAGGGATCATATTTCCCTACTCTCTGTGATCGCATTACTTGCTCGCAGCCGATACCCTGGAATGGACTTATCCAATAGCTAATGCCAAGACTGGATCTATTTTAATTACATTGTTTTTAAAGACACTGCGTTTTTTTTAAAAGTTCGCTTCTTCTAACCTTTTTATAATTGAAGGGTTGTCCCAAAACTCCGCAGCAATGGGGGAGCAGCCAATCTTCACCACCAGGGCCCATGTGTTCCAGATTGACCCGACCACCAAGAAGAACTGGGTCCCAGCCAGCAAACAGGCAGTCACCGTTTCCTACTTCTACGACTCCACACGCAACAGCTACCGCATCATCAGTGTAGATGGATCCAAGGTagggGTGATCATCAACAGCACCATCACCCCAAACATGACCTTCACCAAGACCTCCCAGAAGTTTGGCCAATGGGCTGACAGCAGAGCCAACACAGTGTTCGGACTGGGGTTTGCCTCCGAGCAGCAGCTGGCCAAGTTTGCTGAGAAGTTCCAGGAAGTGAAAGAAGCAGCGAAGCTGGCCAGGGACAAGTCACAGGAGAAGATGGAGACATCGAGTAACAATTCCCAGgaGTCGGGTCGTGAGACCCCCTCGTCCACCCAGGCCTCCAGCATCAACGGGACGGATGATGAGAAGATCTCCCACGGAGGACCGGAGACCGCAGCGCTGATGAGCGAGAACGACAAACTCAAGACCACTGTGGAAcagagtaaCACCAATGCTAAGAAGTTGGAGACAGAACTCCAGACTCTACGGGACAGTAATGCTCGGCTGGTAGACGCGCTAACGGAGTCCTCCGCTAACGTAGAGATCTGGAAGAAACAACTCAACACCTGCAAGGAGGAGAGCGACACGCTGAGGGAAAAGaTAGCAGAGTTGGAGTCTCAGTGTGAAAAGGCCaatgtggagaaggagaggaactCTAAGCTGACTGTACGAGTTCAGGAGCTGGAGACGGAGCTGCAGGACAAGGAacagGAACTGGAGAACCTGAGGAAGCAAGCAGAGATCATCCCTCAACTCATGGCAGAGTGTGAGAGCATCACAGAGAAACTACAGGCTGCTGAGGTGAAGAACAAGGACCTGGAGGATAGGATGGAGGGTCTTCAGGCCGACATCGAGGACAGCCAGTCCAAGCAGGGCAACATGAAGGGAGAGCTGAAGAAGTTCATGGACGTCCTGGATGGGAAGATTGATGAGCTGCACGAGTTCAGGCAGGGCCTGTCCAAGCTAGGGGTGGATAACTGAGGGAGgacgagacagaggagaggagagagggatggagggatgaccgGTTAGAGATGGAGGTTTTATAAATACCTTCAGGACAGGACTCTGTGGCGCCACGCCCCCAAAGTGGAGACCACACTGAACCAATCAGCTGTAAACAcactacacagtacagtacagagagggagggatggggagaaagagggggggggggggggggggtgagagaggccAGGGCAGGCAGGGGATCACCTGATGGTTCCATCTGGtgtatcagtcagtcagtgttctgGAACTAGAACCTAGAGTCTTCTCTCTGGTTACTGCTCTGTCTCtgtgggggggagacaggttcCAGTTCTAGAACAGGTGGCAGGTTCTATAGTTCTGTCTGTTATTTCTACAGACTGAACTAAGAGGGAAGAAAGGGGTTTAAAAAGGGCTACATGTATTTAAACTACAGCTAATGCAGTACAACCACAGATAAGTAATGATCCCACACTATCCTACTGGTCTCTTTATGACGTGAGGGAAATATAGAAGATATATGTACTTTTCAAGACCTGTCTTTATATTGTGGCTTCATGTCGATCTCAGGTGTGTTTAAAGACAGTTTGTTACTTGTTAGTTAATATGCGAATACACGACAAATACATGACACGGCGGTGTCATCAAGTGCCTCAGGAGAACCGGCCAAACTAGACGGGTGATGACCATGCATCACCATAGTAACGCACTAATTAAAAATGTTTAAACCATTATTTAAGGAATCCTAGTAATGTGACAACCACAACAGgacaaccaccacaacaacaacagccaacacaacaacaacaatgaccacaacaggacaacaacgaCCATAACAGGACAACAATGactacaacaggacaacaatga
>XM_036963250.1
AAATAATAAAAACTTGATATTGAACCCCTGATGGTTGCAGAGAATCAAGTCAAGCACCTGCCACCTGAAGTAAATTGGCGTGGAATGTGACTTGAGGTGGTGGTCAGCTCAACGAGGCCTGAATCAGAAAAAGACAGCCGAAAACCAGCCTCGTCTCCATCTATACGACATGGAGCAGCCAATCTTCACCACCAGGGCCCATGTGTTCCAGATTGACCCGACCACCAAGAAGAACTGGGTCCCAGCCAGCAAACAGGCAGTCACCGTTTCCTACTTCTACGACTCCACACGCAACAGCTACCGCATCATCAGTGTAGATGGATCCAAGGTagggGTGATCATCAACAGCACCATCACCCCAAACATGACCTTCACCAAGACCTCCCAGAAGTTTGGCCAATGGGCTGACAGCAGAGCCAACACAGTGTTCGGACTGGGGTTTGCCTCCGAGCAGCAGCTGGCCAAGTTTGCTGAGAAGTTCCAGGAAGTGAAAGAAGCAGCGAAGCTGGCCAGGGACAAGTCACAGGAGAAGATGGAGACATCGAGTAACAATTCCCAGgaGTCGGGTCGTGAGACCCCCTCGTCCACCCAGGCCTCCAGCATCAACGGGACGGATGATGAGAAGATCTCCCACGGAGGACCGGAGACCGCAGCGCTGATGAGCGAGAACGACAAACTCAAGACCACTGTGGAAcagagtaaCACCAATGCTAAGAAGTTGGAGACAGAACTCCAGACTCTACGGGACAGTAATGCTCGGCTGGTAGACGCGCTAACGGAGTCCTCCGCTAACGTAGAGATCTGGAAGAAACAACTCAACACCTGCAAGGAGGAGAGCGACACGCTGAGGGAAAAGaTAGCAGAGTTGGAGTCTCAGTGTGAAAAGGCCaatgtggagaaggagaggaactCTAAGCTGACTGTACGAGTTCAGGAGCTGGAGACGGAGCTGCAGGACAAGGAacagGAACTGGAGAACCTGAGGAAGCAAGCAGAGATCATCCCTCAACTCATGGCAGAGTGTGAGAGCATCACAGAGAAACTACAGGCTGCTGAGGTGAAGAACAAGGACCTGGAGGATAGGATGGAGGGTCTTCAGGCCGACATCGAGGACAGCCAGTCCAAGCAGGGCAACATGAAGGGAGAGCTGAAGAAGTTCATGGACGTCCTGGATGGGAAGATTGATGAGCTGCACGAGTTCAGGCAGGGCCTGTCCAAGCTAGGGGTGGATAACTGAGGGAGgacgagacagaggagaggagagagggatggagggatgaccgGTTAGAGATGGAGGTTTTATAAATACCTTCAGGACAGGACTCTGTGGCGCCACGCCCCCAAAGTGGAGACCACACTGAACCAATCAGCTGTAAACAcactacacagtacagtacagagagggagggatggggagaaagagggggggggggggggggggtgagagaggccAGGGCAGGCAGGGGATCACCTGATGGTTCCATCTGGtgtatcagtcagtcagtgttctgGAACTAGAACCTAGAGTCTTCTCTCTGGTTACTGCTCTGTCTCtgtgggggggagacaggttcCAGTTCTAGAACAGGTGGCAGGTTCTATAGTTCTGTCTGTTATTTCTACAGACTGAACTAAGAGGGAAGAAAGGGGTTTAAAAAGGGCTACATGTATTTAAACTACAGCTAATGCAGTACAACCACAGATAAGTAATGATCCCACACTATCCTACTGGTCTCTTTATGACGTGAGGGAAATATAGAAGATATATGTACTTTTCAAGACCTGTCTTTATATTGTGGCTTCATGTCGATCTCAGGTGTGTTTAAAGACAGTTTGTTACTTGTTAGTTAATATGCGAATACACGACAAATACATGACACGGCGGTGTCATCAAGTGCCTCAGGAGAACCGGCCAAACTAGACGGGTGATGACCATGCATCACCATAGTAACGCACTAATTAAAAATGTTTAAACCATTATTTAAGGAATCCTAGTAATGTGACAACCACAACAGgacaaccaccacaacaacaacagccaacacaacaacaacaatgaccacaacaggacaacaacgaCCATAACAGGACAACAATGactacaacaggacaacaatga
>XM_036963251.1
AGGACTGTTGAGAGCAGGTGGAAGCCGCACTGTGTCGCTACTGctgctctctgcctgcctctcacGAAACACTAACCCATTGGGGAGAGAGCTGAGAGCGCAGATCCGAGGAAAGGCAACTCCAGCGCAGCAGTCAAGGAATATTCAGCGAACATCATAACTTATTATTTTTTGAAAGCACAGCGTTTATCAGCCTTGCGGCTGCGGATAGAAGACACGGAACGGGTGGGATCATAAGTTGTCACCTCGTCTGAATAAATAAGTTAGGCTAATGAAATGGCATTAGGTTTTTCTGTGAACGCTTGACTATCAGGAGAATCGAAACGCCGCTCAGCTCGCGAGGGAGTGCAGGGATCATATTTCCCTACTCTCTGTGATCGCATTACTTGCTCGCAGCCGATACCCTGGAATGGACTTATCCAATAGCTAATGCCAAGACTGGATCTATTTTAATTACATTGTTTTTAAAGACACTGCGTTTTTTTTAAAAGTTCGCTTCTTCTAACCTTTTTATAATTGAAGGGTTGTCCCAAAACTCCGCAGCAATGGGGGAGCAGCCAATCTTCACCACCAGGGCCCATGTGTTCCAGATTGACCCGACCACCAAGAAGAACTGGGTCCCAGCCAGCAAACAGGCAGTCACCGTTTCCTACTTCTACGACTCCACACGCAACAGCTACCGCATCATCAGTGTAGATGGATCCAAGGTGATCATCAACAGCACCATCACCCCAAACATGACCTTCACCAAGACCTCCCAGAAGTTTGGCCAATGGGCTGACAGCAGAGCCAACACAGTGTTCGGACTGGGGTTTGCCTCCGAGCAGCAGCTGGCCAAGTTTGCTGAGAAGTTCCAGGAAGTGAAAGAAGCAGCGAAGCTGGCCAGGGACAAGTCACAGGAGAAGATGGAGACATCGAGTAACAATTCCCAGgaGTCGGGTCGTGAGACCCCCTCGTCCACCCAGGCCTCCAGCATCAACGGGACGGATGATGAGAAGATCTCCCACGGAGGACCGGAGACCGCAGCGCTGATGAGCGAGAACGACAAACTCAAGACCACTGTGGAAcagagtaaCACCAATGCTAAGAAGTTGGAGACAGAACTCCAGACTCTACGGGACAGTAATGCTCGGCTGGTAGACGCGCTAACGGAGTCCTCCGCTAACGTAGAGATCTGGAAGAAACAACTCAACACCTGCAAGGAGGAGAGCGACACGCTGAGGGAAAAGaTAGCAGAGTTGGAGTCTCAGTGTGAAAAGGCCaatgtggagaaggagaggaactCTAAGCTGACTGTACGAGTTCAGGAGCTGGAGACGGAGCTGCAGGACAAGGAacagGAACTGGAGAACCTGAGGAAGCAAGCAGAGATCATCCCTCAACTCATGGCAGAGTGTGAGAGCATCACAGAGAAACTACAGGCTGCTGAGGTGAAGAACAAGGACCTGGAGGATAGGATGGAGGGTCTTCAGGCCGACATCGAGGACAGCCAGTCCAAGCAGGGCAACATGAAGGGAGAGCTGAAGAAGTTCATGGACGTCCTGGATGGGAAGATTGATGAGCTGCACGAGTTCAGGCAGGGCCTGTCCAAGCTAGGGGTGGATAACTGAGGGAGgacgagacagaggagaggagagagggatggagggatgaccgGTTAGAGATGGAGGTTTTATAAATACCTTCAGGACAGGACTCTGTGGCGCCACGCCCCCAAAGTGGAGACCACACTGAACCAATCAGCTGTAAACAcactacacagtacagtacagagagggagggatggggagaaagagggggggggggggggggggtgagagaggccAGGGCAGGCAGGGGATCACCTGATGGTTCCATCTGGtgtatcagtcagtcagtgttctgGAACTAGAACCTAGAGTCTTCTCTCTGGTTACTGCTCTGTCTCtgtgggggggagacaggttcCAGTTCTAGAACAGGTGGCAGGTTCTATAGTTCTGTCTGTTATTTCTACAGACTGAACTAAGAGGGAAGAAAGGGGTTTAAAAAGGGCTACATGTATTTAAACTACAGCTAATGCAGTACAACCACAGATAAGTAATGATCCCACACTATCCTACTGGTCTCTTTATGACGTGAGGGAAATATAGAAGATATATGTACTTTTCAAGACCTGTCTTTATATTGTGGCTTCATGTCGATCTCAGGTGTGTTTAAAGACAGTTTGTTACTTGTTAGTTAATATGCGAATACACGACAAATACATGACACGGCGGTGTCATCAAGTGCCTCAGGAGAACCGGCCAAACTAGACGGGTGATGACCATGCATCACCATAGTAACGCACTAATTAAAAATGTTTAAACCATTATTTAAGGAATCCTAGTAATGTGACAACCACAACAGgacaaccaccacaacaacaacagccaacacaacaacaacaatgaccacaacaggacaacaacgaCCATAACAGGACAACAATGactacaacaggacaacaat
>XM_036963252.1
AAATAATAAAAACTTGATATTGAACCCCTGATGGTTGCAGAGAATCAAGTCAAGCACCTGCCACCTGAAGTAAATTGGCGTGGAATGTGACTTGAGGTGGTGGTCAGCTCAACGAGGCCTGAATCAGAAAAAGACAGCCGAAAACCAGCCTCGTCTCCATCTATACGACATGGAGCAGCCAATCTTCACCACCAGGGCCCATGTGTTCCAGATTGACCCGACCACCAAGAAGAACTGGGTCCCAGCCAGCAAACAGGCAGTCACCGTTTCCTACTTCTACGACTCCACACGCAACAGCTACCGCATCATCAGTGTAGATGGATCCAAGGTGATCATCAACAGCACCATCACCCCAAACATGACCTTCACCAAGACCTCCCAGAAGTTTGGCCAATGGGCTGACAGCAGAGCCAACACAGTGTTCGGACTGGGGTTTGCCTCCGAGCAGCAGCTGGCCAAGTTTGCTGAGAAGTTCCAGGAAGTGAAAGAAGCAGCGAAGCTGGCCAGGGACAAGTCACAGGAGAAGATGGAGACATCGAGTAACAATTCCCAGgaGTCGGGTCGTGAGACCCCCTCGTCCACCCAGGCCTCCAGCATCAACGGGACGGATGATGAGAAGATCTCCCACGGAGGACCGGAGACCGCAGCGCTGATGAGCGAGAACGACAAACTCAAGACCACTGTGGAAcagagtaaCACCAATGCTAAGAAGTTGGAGACAGAACTCCAGACTCTACGGGACAGTAATGCTCGGCTGGTAGACGCGCTAACGGAGTCCTCCGCTAACGTAGAGATCTGGAAGAAACAACTCAACACCTGCAAGGAGGAGAGCGACACGCTGAGGGAAAAGaTAGCAGAGTTGGAGTCTCAGTGTGAAAAGGCCaatgtggagaaggagaggaactCTAAGCTGACTGTACGAGTTCAGGAGCTGGAGACGGAGCTGCAGGACAAGGAacagGAACTGGAGAACCTGAGGAAGCAAGCAGAGATCATCCCTCAACTCATGGCAGAGTGTGAGAGCATCACAGAGAAACTACAGGCTGCTGAGGTGAAGAACAAGGACCTGGAGGATAGGATGGAGGGTCTTCAGGCCGACATCGAGGACAGCCAGTCCAAGCAGGGCAACATGAAGGGAGAGCTGAAGAAGTTCATGGACGTCCTGGATGGGAAGATTGATGAGCTGCACGAGTTCAGGCAGGGCCTGTCCAAGCTAGGGGTGGATAACTGAGGGAGgacgagacagaggagaggagagagggatggagggatgaccgGTTAGAGATGGAGGTTTTATAAATACCTTCAGGACAGGACTCTGTGGCGCCACGCCCCCAAAGTGGAGACCACACTGAACCAATCAGCTGTAAACAcactacacagtacagtacagagagggagggatggggagaaagagggggggggggggggggggtgagagaggccAGGGCAGGCAGGGGATCACCTGATGGTTCCATCTGGtgtatcagtcagtcagtgttctgGAACTAGAACCTAGAGTCTTCTCTCTGGTTACTGCTCTGTCTCtgtgggggggagacaggttcCAGTTCTAGAACAGGTGGCAGGTTCTATAGTTCTGTCTGTTATTTCTACAGACTGAACTAAGAGGGAAGAAAGGGGTTTAAAAAGGGCTACATGTATTTAAACTACAGCTAATGCAGTACAACCACAGATAAGTAATGATCCCACACTATCCTACTGGTCTCTTTATGACGTGAGGGAAATATAGAAGATATATGTACTTTTCAAGACCTGTCTTTATATTGTGGCTTCATGTCGATCTCAGGTGTGTTTAAAGACAGTTTGTTACTTGTTAGTTAATATGCGAATACACGACAAATACATGACACGGCGGTGTCATCAAGTGCCTCAGGAGAACCGGCCAAACTAGACGGGTGATGACCATGCATCACCATAGTAACGCACTAATTAAAAATGTTTAAACCATTATTTAAGGAATCCTAGTAATGTGACAACCACAACAGgacaaccaccacaacaacaacagccaacacaacaacaacaatgaccacaacaggacaacaacgaCCATAACAGGACAACAATGactacaacaggacaacaat
>TU2279970
CTGATGGTTCCATCTGGtgtatcagtcagtcagtgttctgGAACTAGAACCTAGAGTCTTCTCTCTGGTTACTGCTCTGTCTCtgtgggggggagacaggttcCAGTTCTAGAACAGGTGGCAGGTTCTATAGTTCTGTCTGTTATTTCTACAGACTGAACTAAGAGGGAAGAAAGGGGTTTAAAAAGGGCTACATGTATTTAAACTACAGCTAATGCAGTACAACCACAGATAAGTAATGATCCCACACTATCCTACTGGTCTCTTTATGACGTGAGGGAAATATAGAAGATATATGTACTTTTCAAGACCTGTCTTTATATTGTGGCTTCATGTCGATCTCAGGTGTGTTTAAAGACAGTTTGTTACTTGTTAGTTAATATGCGAATACACGACAAATACATGACACGGCGGTGTCATCAAGTGCCTCAGGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963249.1 False 2501 mRNA 0.50 9 6145548 6297765
XM_036963250.1 False 2119 mRNA 0.50 9 6145548 6298226
XM_036963251.1 False 2490 mRNA 0.49 9 6145550 6297762
XM_036963252.1 False 2111 mRNA 0.50 9 6145550 6298226
TU2279970 True 437 lncRNA 0.42 1 6145759 6146195

Neighbor

gene id symbol gene type direction distance location
LOC110517106 fsd2 coding downstream 46312 6049354 ~ 6099236 (-)
LOC110519162 s27a2 coding downstream 328801 5795088 ~ 5816747 (-)
LOC110514841 LOC106593544 coding downstream 352206 5777022 ~ 5793342 (-)
LOC110514656 LOC106593544 coding downstream 384543 5749526 ~ 5761005 (-)
usp8 LOC106592072 coding downstream 448289 5662576 ~ 5697259 (-)
LOC118944448 LOC106562861 coding upstream 47063 6345289 ~ 6352326 (-)
LOC118936596 LOC106591161 coding upstream 93188 6391414 ~ 6444276 (-)
LOC118944398 NA coding upstream 95857 6394083 ~ 6397020 (-)
LOC110516490 LOC106588008 coding upstream 525838 6824064 ~ 6830995 (-)
LOC110527018 LOC106587942 coding upstream 704069 7002295 ~ 7039738 (-)
G1992528 NA non-coding downstream 668 6143402 ~ 6144880 (-)
G1992558 NA non-coding downstream 3993 6141006 ~ 6141555 (-)
G1992557 NA non-coding downstream 5785 6139509 ~ 6139763 (-)
G1992555 NA non-coding downstream 9630 6135637 ~ 6135918 (-)
G1992554 NA non-coding downstream 11542 6133177 ~ 6134006 (-)
G1992608 NA non-coding upstream 25233 6323459 ~ 6324227 (-)
G1992610 NA non-coding upstream 27689 6325915 ~ 6326217 (-)
G1992611 NA non-coding upstream 28255 6326481 ~ 6327024 (-)
G1992612 NA non-coding upstream 32689 6330915 ~ 6331143 (-)
G1992613 NA non-coding upstream 34594 6332820 ~ 6333241 (-)
G1992485 NA other downstream 156775 5986431 ~ 5988773 (-)
G1992375 NA other downstream 436864 5708268 ~ 5708684 (-)
G1991846 NA other downstream 885766 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 1059862 5043780 ~ 5086440 (-)
LOC110526851 vps13c other downstream 1291793 4718652 ~ 4972108 (-)
G1994075 NA other upstream 1091019 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 1353160 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 1451069 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 1505618 7802643 ~ 7809933 (-)
G1992571 NA non-coding upstream 47838 6194033 ~ 6203665 (-)
G1992579 NA non-coding upstream 94509 6240704 ~ 6242551 (-)
G1992527 NA non-coding upstream 98352 6244547 ~ 6302653 (-)
G1992589 NA non-coding upstream 127720 6273915 ~ 6274267 (-)

Expression


Co-expression Network