LOC118944448 (LOC106562861)


Basic Information

Item Value
gene id LOC118944448
gene name LOC106562861
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 6345289 ~ 6352326 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963854.1
TGTATTTAAAGGTCCTTCTCCCGGCCTCTTGGAGCTGACATGAACATCTTCACTAAAGTATACGGACTAGCCCAACAAACCAGCAAGCTGGGGTCTGTGCTCCAACGTGCCTTCTACGGGTCCAGTGGGAGGGTGACCCTTTTCGAACAGCGTAATTTTGCCGGCAGACGTCTGGACCTGAGTGCCGACTGCCAGAAACTAAGCGACAAGAACTTCCCAGAGAGATGCAACTCTGTGCAGGTGGAGAATGGAGCatGGGTGGGCTACGAGCAGGAGAACTTCAGGGGACGTCAGTACCTGTGGGACATGGCAGAGAAGGGAGAGTACAACTGCTACGACAAGTGGTGTGCCCAGGTGGACCATGTCTCCTCGGTGCGCTCAGTCAAACAGGACTCGTCTCCTGCCCGAGCCCATCTGTTTGAGAGGGCTGGGTTCTCTGGTAAGAGGACAGAAGTACAGGATGACATCCCCAACATGATGACTCGCTACAGTCTCAACAGGGCTGCCTCTATCCGTGTCCTAGGAGGGGCCTGGGTGGTGTACCAGGAGCCTAACTACAGAGGTCCCCACTATGTCTTGGAGAAGCGTGACTACAACAACGCCTCTGACTGGGGCTCCCAGAGCAGCACAGTGGGCTCCATGCGACGAGTTCGCTTCAATAACTAACCAGCcgactcctgagtggcgcagcggtctaaggcactgcatctcagagccATCACTACAGaactggttcgattccaggatgtatcacaaccggacgtgattgggagacccatagggcggagcacaattggcccagcgtcgtccgggttagggcttgtccggggtaggccgtcattgtaaataagcatttgttcttaactgacttgcctagttaaataaaggttttaaaaaatgaaCCCCCCTGCCCTAATCCCCCTAACCAACAGGAGGACTCCACACCAGCACCTCttccacctgacacacacacacacacacacacacacacacacactgtcagctTAATACACACACATTATGCAAAACTACCAGAACACTATTTTAATaataaacagtaaaaagaca

Function

NR:

description
PREDICTED: gamma-crystallin C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963854.1 True 1068 mRNA 0.52 6 6345289 6352326

Neighbor

gene id symbol gene type direction distance location
LOC118944399 LOC106562864 coding downstream 47063 6145548 ~ 6298226 (-)
LOC110517106 fsd2 coding downstream 246053 6049354 ~ 6099236 (-)
LOC110519162 s27a2 coding downstream 528542 5795088 ~ 5816747 (-)
LOC110514841 LOC106593544 coding downstream 551947 5777022 ~ 5793342 (-)
LOC110514656 LOC106593544 coding downstream 584284 5749526 ~ 5761005 (-)
LOC118936596 LOC106591161 coding upstream 39088 6391414 ~ 6444276 (-)
LOC118944398 NA coding upstream 41757 6394083 ~ 6397020 (-)
LOC110516490 LOC106588008 coding upstream 471738 6824064 ~ 6830995 (-)
LOC110527018 LOC106587942 coding upstream 649969 7002295 ~ 7039738 (-)
LOC118944479 NA coding upstream 695434 7047760 ~ 7048469 (-)
G1992613 NA non-coding downstream 12048 6332820 ~ 6333241 (-)
G1992612 NA non-coding downstream 14146 6330915 ~ 6331143 (-)
G1992611 NA non-coding downstream 18265 6326481 ~ 6327024 (-)
G1992610 NA non-coding downstream 19072 6325915 ~ 6326217 (-)
G1992608 NA non-coding downstream 21062 6323459 ~ 6324227 (-)
G1992626 NA non-coding upstream 17468 6369794 ~ 6371191 (-)
G1992634 NA non-coding upstream 32916 6385242 ~ 6387418 (-)
G1992633 NA non-coding upstream 37004 6389330 ~ 6389810 (-)
G1992640 NA non-coding upstream 53515 6405841 ~ 6407972 (-)
G1992485 NA other downstream 356516 5986431 ~ 5988773 (-)
G1992375 NA other downstream 636605 5708268 ~ 5708684 (-)
G1991846 NA other downstream 1085507 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 1259603 5043780 ~ 5086440 (-)
LOC110526851 vps13c other downstream 1491534 4718652 ~ 4972108 (-)
G1994075 NA other upstream 1036919 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 1299060 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 1396969 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 1451518 7802643 ~ 7809933 (-)

Expression


Co-expression Network