LOC110516490 (LOC106588008)


Basic Information

Item Value
gene id LOC110516490
gene name LOC106588008
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 6824064 ~ 6830995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964502.1
TAGCCAACGTCACAACAAAATCCCGGAAGTGTCAGTCTGAAAACAGACCCGTCGCCGTTAGCTAGCTGAGTGTTTCAAAATCTATTTGCTAAATCGTCTCATTTTAAACAGTTTATACAAACGAAATACTCCTATTTATCTTTTAGAAAATGGGAACCAGAGATGATGAATACGATTATCTGTTTAAAGTGGTTCTGATAGGAGACTCGGGTGTGGGCAAGAGCAACCTGCTCTCTCGTTTCACCCGGAATGAGTTTAACCTGGAAAGTAAGAGCACCATTGGAGTGGAGTTTGCCACCCGCAGTATCCAGGTGGATGGGAAAACGGTGAAGGCTCAGATCTGGGACACGGCAGGACAGGAGCGCTACCGGGCTATCACCTCGGCGTACTACAGAGGCGCGGTGGGGGCCCTGCTGGTCTATGACATCGCCAAGCACCTGACCTATGAAAATGTGGAACGGTGGCTGAAAGAGCTGAGAGACCATGCAGACACCAACATCGTCATCATGCTGGTTGGCAACAAGAGTGACCTGCGTCACCTCCGGGCCGTGCCCACCGACGAGGCTCGGGCCTTCGCAGAGAAAAACGGTTTGTCTTTCCTTGAGACGTCAGCCCTGGATTCCACCAACGTTGAAACGGCTTTCCAGACCAttctgacagaAATCTATCGAATCGTCTCTCAGAAGCAGATGTCAGAGCGTCAGGAGAGCGACATGTCTCCTAGCAACAATGTGGTCAACATCCAGGTGCAGCCCACTGAGAACAAACCAAAGATGCAGTGCTGTCAGAACATCTAGCCCCGCTCATgttaccactacacctctaccccCTTATATACCCTGtacccccacctctaccccctCATATACCCTGTACCCCCACCTGTACCCCCTCATATACCCTGtacccccacc

Function

NR:

description
PREDICTED: ras-related protein Rab-11A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0001525 angiogenesis biological_process
GO:0032402 melanosome transport biological_process
GO:0015031 protein transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0055037 recycling endosome cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964502.1 True 914 mRNA 0.51 5 6824064 6830995

Neighbor

gene id symbol gene type direction distance location
LOC118936596 LOC106591161 coding downstream 379788 6391414 ~ 6444276 (-)
LOC118944398 NA coding downstream 427044 6394083 ~ 6397020 (-)
LOC118944448 LOC106562861 coding downstream 471738 6345289 ~ 6352326 (-)
LOC118944399 LOC106562864 coding downstream 525838 6145548 ~ 6298226 (-)
LOC110517106 fsd2 coding downstream 724828 6049354 ~ 6099236 (-)
LOC110527018 LOC106587942 coding upstream 171300 7002295 ~ 7039738 (-)
LOC118944479 NA coding upstream 216765 7047760 ~ 7048469 (-)
LOC110506999 LOC105026498 coding upstream 217936 7048931 ~ 7061551 (-)
LOC110507001 LOC106587953 coding upstream 237617 7068612 ~ 7086951 (-)
LOC110527022 LOC106587927 coding upstream 344087 7175082 ~ 7179679 (-)
G1992875 NA non-coding downstream 3071 6820204 ~ 6820993 (-)
G1992876 NA non-coding downstream 4065 6818023 ~ 6819999 (-)
G1992872 NA non-coding downstream 7687 6814766 ~ 6816377 (-)
G1992893 NA non-coding downstream 13990 6804497 ~ 6810074 (-)
G1992890 NA non-coding downstream 20590 6802441 ~ 6803474 (-)
G1993053 NA non-coding upstream 23486 6854481 ~ 6855297 (-)
G1993058 NA non-coding upstream 29529 6860524 ~ 6862867 (-)
G1993086 NA non-coding upstream 80073 6911068 ~ 6912259 (-)
G1993087 NA non-coding upstream 81636 6912631 ~ 6914261 (-)
G1993088 NA non-coding upstream 83486 6914481 ~ 6914763 (-)
G1992485 NA other downstream 835291 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1115380 5708268 ~ 5708684 (-)
G1991846 NA other downstream 1564282 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 1738378 5043780 ~ 5086440 (-)
G1994075 NA other upstream 558250 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 820391 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 918300 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 972849 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 other upstream 1040187 7863456 ~ 7873075 (-)

Expression


Co-expression Network