LOC110506999 (LOC105026498)


Basic Information

Item Value
gene id LOC110506999
gene name LOC105026498
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7048931 ~ 7061551 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964021.1
TAGTTGGATGGGGTTTGTGCTGGAGGACCGCTGTGCCGCAGTCATTTATAGTAAATTGCTTCGATACACACGGAGCAAACGTACCTCAAAGTAAGTTCAAGATCGTTTTAGGGAACCGTGTCGTTCAGTACAAACCGTTAAGCAACGTAAACGTTCAATCGAACTGAACGCACCCCTGAGTATCATGGATGACTGTTTCCGCATCTAACCAGCTGTCCTAATGAATGAGGCGGAGGATCTCCAGCATTGCTTCTCAGTGATATAACAGCAAGGATATTAATTTCACTAACAGTACCTTTAGATATCACAATGCAGACCCTCACACCCCACGTGTATTGGGCACAGCGTCATGCAGACATCTACCTGCGTGTGGAGCTGAGTGACGCTAAGgATCTTGAAATCTGCGTGCAAAACAACACCCTGCAATTCAAAGCTCAGGGTCACGGCGCTAAAGGAGACCATGACTATGAGTTCAGTCTGGACTTCCTGGAACCAGTGAAACCTGAGgtTAGTCACAGGTCGACCCAGCGCCTGGTAAATGTGACTGTGAGGAAGCAAGAGCAGCGTTGGTGGGACAGACTCACTCTGCAGGAGAGGAAACCTCTCTTCCTGGCGCCAGACTTCGACCGTTGGCTCGACGAATCAGACGCGGAGATGGAGCTTCAGGCTAAGGAAGAGGAGAAGATAAACAAGGTCAGCATCGAGTCAAGAATCCGTAAAGACCCCTACCTGGGCCTGAAGAAGGGCTATCTGTTCATGTACAACCTAGTCCAGTTCCTGGGCTTCTCCTGGATCTTTGTCAACATGACCGTCCGTCTCTTCATCCTGGGACAAGACTCGTTCTATGACACGTTCCACACCATTGCTGACATGATGTACTTCTGTCAGATGATGGCCGTAGCAGAGGTCATGAACCCTCTAGTGGGTCTGGTCAAGACAGGGGTGTTCCCTGCTATGATCCAGGTGGTGGGTAGGAACGTAATCCTGTTTGTGATCTTCGGTAGTCTGGAGGAGATGCAGAACAAAGCAGTGGTCTTCTTCGTCTTCTACCTCTGGAGCACCATAGAGATCTTCAGGTATCCATTCTACATGCTGGCCTGCATCGACACAGACTGGAAGCTGCTGACCTGGCTCAGATACTCCATCTGGATGCCCCTCTACCCTCTGGGGGTGCTAGCAGAGGCTATCGCTGTGATCCAGTCCCTGCCTATCTTCGATGAGACCCGTCTGTACAGCATCCCTCTACCTACGGTCCTGGGCTCGTCCttcagcttttccttcactctgaagaTCTACCTGGCCCTCATGTTCCTCGGTCTGTTCATCAACTTCCGCCACCTGTTTCGCCAGAGGAGGAGACGAATGCGCTCCAGGAAGAGGAAAAATAACTAACGGATAGAAAGACACACCTCACGATCTCTCCAGTCTCACTGCTGGTTGCCTTTTCAcacctctcctcccacctctctcttctctcctcacctcacacctctgtcctctcctctctcacctcacctcacacctctcctctctctcttctctcctcacctcacccctctgtcctctctctcttc

Function

NR:

description
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase-like

GO: NA

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964021.1 True 1574 mRNA 0.51 11 7048931 7061551

Neighbor

gene id symbol gene type direction distance location
LOC118944479 NA coding downstream 462 7047760 ~ 7048469 (-)
LOC110527018 LOC106587942 coding downstream 9193 7002295 ~ 7039738 (-)
LOC110516490 LOC106588008 coding downstream 217936 6824064 ~ 6830995 (-)
LOC118936596 LOC106591161 coding downstream 604655 6391414 ~ 6444276 (-)
LOC118944398 NA coding downstream 651911 6394083 ~ 6397020 (-)
LOC110507001 LOC106587953 coding upstream 7061 7068612 ~ 7086951 (-)
LOC110527022 LOC106587927 coding upstream 113531 7175082 ~ 7179679 (-)
LOC110526832 LOC106587935 coding upstream 344606 7406157 ~ 7439603 (-)
LOC118944524 LOC106562850 coding upstream 393670 7455221 ~ 7528244 (-)
LOC118944525 NA coding upstream 403569 7465120 ~ 7466620 (-)
G1993134 NA non-coding downstream 6231 7040673 ~ 7042700 (-)
G1993121 NA non-coding downstream 43800 7004493 ~ 7005131 (-)
G1993117 NA non-coding downstream 49383 6999320 ~ 6999548 (-)
G1993118 NA non-coding downstream 50935 6997075 ~ 6997996 (-)
G1993112 NA non-coding downstream 62885 6985212 ~ 6986046 (-)
G1993140 NA non-coding upstream 4623 7066174 ~ 7068038 (-)
G1993146 NA non-coding upstream 27752 7089303 ~ 7089516 (-)
G1993147 NA non-coding upstream 32883 7094434 ~ 7094780 (-)
G1993150 NA non-coding upstream 44268 7105819 ~ 7106032 (-)
G1993153 NA non-coding upstream 46438 7107989 ~ 7108250 (-)
G1992485 NA other downstream 1060158 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1340247 5708268 ~ 5708684 (-)
G1991846 NA other downstream 1789149 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 1963245 5043780 ~ 5086440 (-)
G1994075 NA other upstream 327694 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 589835 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 687744 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 742293 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 other upstream 809631 7863456 ~ 7873075 (-)

Expression


Co-expression Network