LOC110507001 (LOC106587953)


Basic Information

Item Value
gene id LOC110507001
gene name LOC106587953
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7068612 ~ 7086951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963428.1
GTATGACGCCGCATCTCTTTGTTGGTCCAGCGGCAGCTGCGCTCATGTTGTTGTAgctactctctctccctggaaATATTTTTCTCTTTCGAAATATTTCGTCTCTTGTTTTCGTCGCGGCCTGTACACATCCTAGTATCTAGCGTTTGGTATCATACCTTGTCACAATATCAAGTTAAACCGAGTAATGGACTCAGACGAAGGGTACAATTATGAATtcgacgaggaggaagaggaatgcaGCGAAGACAGCGCCGAGGAGGATCCCGAAGACGACACCCTGGAAGTGGAGTTGGATGATCCTGTTGTGGCCGGTGGAGAACGAGATGAATGTGGGGAGACCGGAGGCAGTGGCCTAGGGCCCGGTCAAGACGAAGAGGATTATCGGTTCGAGGTTTTGACTGCTGAACAGATCCTTCAGCATATGGTCGAGTGTATCAGGGAGGTCAATGATGTCATCCAGAACCCTGCAACGATAACAAGAATACTTCTTAGTCACTTCAATTGGGACAAAGAGAAACTGATGGAAAGATATTTTGATGGGAACCTTGACAAATTGTTCTCGGAATGCCATGTCATCAACCCCAGTAAGAAGTCGAGGACGCGGCTGATGAACACGAGGTCCTCTGCTCAGGATCTTCCCTGTCAGATCTGCTACCTGAACTACCCAAACTCGTACTTCACTGGCCTGGAGTGTGGACACAAGTTCTGCATGCAGTGTTGGGGTGACTACTTGACTACCAAAATCATTGAGGAGGGGATGGGACAGacaatttCCTGCCCTGCTCACAGCTGTGATATATTGGTGGACGACAACACAGTCATGAGACTGATCACAGAGTCCAAGGTGAAGTTGAAGTACCAACACTTGATTACCAATAGTTTTGTAGAGTGCAATCGGCTGTTAAAATGGTGCCCGGCGCCAGACTGTCATCACGTAGTCAAAGTCCAGTACCCAGATGCTAAGCCTGTGAGATGCACATGTGGCCGGCAGTTCTGCTTCAATTGTGGCGAGAACTGGCATGATCCCGTCAAGTGTAAGTGGTTGAGGAAATGGATCAAGAAGTGTGACGATGACAGCGAGACGTCTAACTGGATCGCAGCCAATACAAGGGAGTGCCCCAAATGCCACGTGACCATTGAGAAGGACGGCGGCTGCAACCACATGGTTTGTCGGAACCAGAGCTGCAAGGCAGAGTTCTGCTGGGTCTGCCTGGGGCCCTGGGAACCACACGGCTCTGcctgGTACAACTGCAACCGCTACAATGAGGATGATGCCAAGGCAGCGAGGGACGCCCAAGAGGTAACAcggTCCAGGGCAGCCCTGCAGAGGTACCTGTTCTACTGCAACCGTTACATGAACCACATGCAGTCGCTGCGCTTCGAGCACAAGCTGTACGCCGGGGTCAAGGCCAAGATGGAGGAGATGCAGCATCACAACATGTCCTGGATCGAGGTGCAGTTCCTGAAGAAGGCCGTGGACGTGCTGTGTCAGTGTCGCTCCACACTCATGTTCACCTACGTCTTCGCCTTCTACCTCAAGAAGAACAACCAGTCCATCATCTTTGAGAACAATCAGGCTGACTTGGAGAACGCTACGGAGGTTCTGTCTGGATATCTGGAGCGGGACATCTCCCAGGACTCTCTGCAGGACATCAAACAGAAAGTACAGGACAAGTACAGATACTGTGAGAGTCGGCGTCGGGTGCTGCTGCAACATGTGCACGAGGGCTATGAGAAGGACCTCTGGGAATACATAGAAGATTAAGGACAGACTCTTTACTAAAAAGAAAAAACCTCTACAGACTAGAGCGCTGATGCAATGCCACGGGGCAGGTTGTTGCTGATCTTCCCAATATTGCAttttttttctcctcctcttgGGTTTTGTTTAATGGAAaagtttaaaataaattatatcaaaataataaaataaaaaaaagtagaaTATTTCTAACATTAATCGTACAACAGTATTGTTTGTAGCAGATTGGATTGTGAGGACAAAAaaaaa
>XM_036963429.1
GTATGACGCCGCATCTCTTTGTTGGTCCAGCGGCAGCTGCGCTCATGTTGTTGTAgctactctctctccctggaaATATTTTTCTCTTTCGAAATATTTCGTCTCTTGTTTTCGTCGCGGCCTGTACACATCCTAGTATCTAGCGTTTGGTATCATACCTTGTCACAATATCAAGTTAAACCGAGTAATGGACTCAGACGAAGGGTACAATTATGAATtcgacgaggaggaagaggaatgcaGCGAAGACAGCGCCGAGGAGGATCCCGAAGACGACACCCTGGAAGTGGAGTTGGATGATCCTGTTGTGGCCGGTGGAGAACGAGATGAATGTGGGGAGACCGGAGGCAGTGGCCTAGGGCCCGGTCAAGACGAAGAGGATTATCGGTTCGAGGTTTTGACTGCTGAACAGATCCTTCAGCATATGGTCGAGTGTATCAGGGAGGTCAATGATGTCATCCAGAACCCTGCAACGATAACAAGAATACTTCTTAGTCACTTCAATTGGGACAAAGAGAAACTGATGGAAAGATATTTTGATGGGAACCTTGACAAATTGTTCTCGGAATGCCATGTCATCAACCCCAGTAAGAAGTCGAGGACGCGGCTGATGAACACGAGGTCCTCTGCTCAGGATCTTCCCTGTCAGATCTGCTACCTGAACTACCCAAACTCGTACTTCACTGGCCTGGAGTGTGGACACAAGTTCTGCATGCAGTGTTGGGGTGACTACTTGACTACCAAAATCATTGAGGAGGGGATGGGACAGacaatttCCTGCCCTGCTCACAGCTGTGATATATTGGTGGACGACAACACAGTCATGAGACTGATCACAGAGTCCAAGGTGAAGTTGAAGTACCAACACTTGATTACCAATAGTTTTGTAGAGTGCAATCGGCTGTTAAAATGGTGCCCGGCGCCAGACTGTCATCACGTAGTCAAAGTCCAGTACCCAGATGCTAAGCCTGTGAGATGCACATGTGGCCGGCAGTTCTGCTTCAATTGTGGCGAGAACTGGCATGATCCCGTCAAGTGTAAGTGGTTGAGGAAATGGATCAAGAAGTGTGACGATGACAGCGAGACGTCTAACTGGATCGCAGCCAATACAAGGGAGTGCCCCAAATGCCACGTGACCATTGAGAAGGACGGCGGCTGCAACCACATGGTTTGTCGGAACCAGAGCTGCAAGGCAGAGTTCTGCTGGGTCTGCCTGGGGCCCTGGGAACCACACGGCTCTGcctgGTACAACTGCAACCGCTACAATGAGGATGATGCCAAGGCAGCGAGGGACGCCCAAGAGcggTCCAGGGCAGCCCTGCAGAGGTACCTGTTCTACTGCAACCGTTACATGAACCACATGCAGTCGCTGCGCTTCGAGCACAAGCTGTACGCCGGGGTCAAGGCCAAGATGGAGGAGATGCAGCATCACAACATGTCCTGGATCGAGGTGCAGTTCCTGAAGAAGGCCGTGGACGTGCTGTGTCAGTGTCGCTCCACACTCATGTTCACCTACGTCTTCGCCTTCTACCTCAAGAAGAACAACCAGTCCATCATCTTTGAGAACAATCAGGCTGACTTGGAGAACGCTACGGAGGTTCTGTCTGGATATCTGGAGCGGGACATCTCCCAGGACTCTCTGCAGGACATCAAACAGAAAGTACAGGACAAGTACAGATACTGTGAGAGTCGGCGTCGGGTGCTGCTGCAACATGTGCACGAGGGCTATGAGAAGGACCTCTGGGAATACATAGAAGATTAAGGACAGACTCTTTACTAAAAAGAAAAAACCTCTACAGACTAGAGCGCTGATGCAATGCCACGGGGCAGGTTGTTGCTGATCTTCCCAATATTGCAttttttttctcctcctcttgGGTTTTGTTTAATGGAAaagtttaaaataaattatatcaaaataataaaataaaaaaaagtag

Function

NR:

description
E3 ubiquitin-protein ligase arih1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005737 cytoplasm cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11968 ARIH1; ariadne-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963428.1 False 2014 mRNA 0.49 14 7068612 7086951
XM_036963429.1 True 1940 mRNA 0.49 14 7068680 7086951

Neighbor

gene id symbol gene type direction distance location
LOC110506999 LOC105026498 coding downstream 7061 7048931 ~ 7061551 (-)
LOC118944479 NA coding downstream 20143 7047760 ~ 7048469 (-)
LOC110527018 LOC106587942 coding downstream 28874 7002295 ~ 7039738 (-)
LOC110516490 LOC106588008 coding downstream 237617 6824064 ~ 6830995 (-)
LOC118936596 LOC106591161 coding downstream 624336 6391414 ~ 6444276 (-)
LOC110527022 LOC106587927 coding upstream 88131 7175082 ~ 7179679 (-)
LOC110526832 LOC106587935 coding upstream 319206 7406157 ~ 7439603 (-)
LOC118944524 LOC106562850 coding upstream 368270 7455221 ~ 7528244 (-)
LOC118944525 NA coding upstream 378169 7465120 ~ 7466620 (-)
LOC110526835 LOC105026486 coding upstream 471060 7558011 ~ 7564844 (-)
G1993140 NA non-coding downstream 574 7066174 ~ 7068038 (-)
G1993134 NA non-coding downstream 25912 7040673 ~ 7042700 (-)
G1993121 NA non-coding downstream 63481 7004493 ~ 7005131 (-)
G1993117 NA non-coding downstream 69064 6999320 ~ 6999548 (-)
G1993118 NA non-coding downstream 70616 6997075 ~ 6997996 (-)
G1993146 NA non-coding upstream 2352 7089303 ~ 7089516 (-)
G1993147 NA non-coding upstream 7483 7094434 ~ 7094780 (-)
G1993150 NA non-coding upstream 18868 7105819 ~ 7106032 (-)
G1993153 NA non-coding upstream 21038 7107989 ~ 7108250 (-)
G1993158 NA non-coding upstream 33707 7120658 ~ 7124335 (-)
G1992485 NA other downstream 1079839 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1359928 5708268 ~ 5708684 (-)
G1991846 NA other downstream 1808830 5257722 ~ 5259782 (-)
LOC110515683 LOC105025469 other downstream 1982926 5043780 ~ 5086440 (-)
G1994075 NA other upstream 302294 7389245 ~ 7389568 (-)
LOC118936603 LOC106587968 other upstream 564435 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 other upstream 662344 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 other upstream 716893 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 other upstream 784231 7863456 ~ 7873075 (-)

Expression


Co-expression Network