LOC110526835 (LOC105026486)


Basic Information

Item Value
gene id LOC110526835
gene name LOC105026486
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7558011 ~ 7564844 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964011.1
GGATAAACAGACAGCTGGTCCCAGAACTGTGCCTATATATACCCTTCTTCATATTTCTCCTCCCTGGCTTGACAATCTCAGTCACTCATCCCTCCGTCTTGCAACGCTCTCTTCCTTCTAGGAAGTGATATCAACCACCGGCCAAGATGTCAGATAAAAAGATGTCGTCGAGTCGCAGGCAACATCTGAAGAGCTTGATGCTCCAGATTGCCCAGGGGTTCATAGAGGCTGAGGCCATCCAGGCAGAGGAGGACAAAAACAGCTACATGGATGAgaatgtcccctccctctctgttccggGATCCATGCAGGAACTCCAGgaTCTGTGCAAGAAGCTCCACCAGCAGATTGATGCAGTGGATGAGCAGAGATATGACACGCAAAGCAAAGTAGCCAAGTCCGATAAGGAGaTTGAGGATCTGAAGATAAAACTACAAGACCTGAAGGGCAAGTTCAGGAAGCCCGTTCTGAAGAAAGTCCGCATGTCTGCTGATGCTATGCTCCAGGCTCTGCTGGGCTCCAAACACAAGGTGTCCATGGATCTGAGGTCCAACCTGAAGCAAGTCAAGAAGGAGGTCAAGGATGAGGTGAAAGATGCAGCTGACTGGCGTAAGAACATAGAGGACAAGGCTGGCATGGACGGTAGAAAGAAGATGTTTGAGTCCGACCCTTAAGACCCTTTAACAAGACCCCCAATATGTGTATTTGTGTTCATATGTCTCATCTGATAACATCCTTCATTTTAATCTACATTCTCCTCCTGTCATTCCTATTTACACTACTCTGTCTAATAAAAGAAAATACTTCAa

Function

NR:

description
troponin I, fast skeletal muscle-like isoform X1

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964011.1 True 809 mRNA 0.47 7 7558011 7564844

Neighbor

gene id symbol gene type direction distance location
LOC118944524 LOC106562850 coding downstream 29767 7455221 ~ 7528244 (-)
LOC118944525 NA coding downstream 91391 7465120 ~ 7466620 (-)
LOC110526832 LOC106587935 coding downstream 118408 7406157 ~ 7439603 (-)
LOC110527022 LOC106587927 coding downstream 378332 7175082 ~ 7179679 (-)
LOC110507001 LOC106587953 coding downstream 471060 7068612 ~ 7086951 (-)
LOC110526838 LOC106587956 coding upstream 1772 7566616 ~ 7572156 (-)
LOC110526837 LOC106592039 coding upstream 14553 7579397 ~ 7596912 (-)
LOC118944548 NA coding upstream 32310 7597154 ~ 7602431 (-)
LOC118936603 LOC106587968 coding upstream 82554 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 coding upstream 179508 7744309 ~ 7751407 (-)
G1994110 NA non-coding downstream 5001 7552651 ~ 7553010 (-)
G1994119 NA non-coding downstream 55595 7501921 ~ 7502416 (-)
G1994117 NA non-coding downstream 67821 7488825 ~ 7490190 (-)
G1994115 NA non-coding downstream 69602 7484073 ~ 7488409 (-)
G1994116 NA non-coding downstream 72096 7484254 ~ 7485915 (-)
G1994174 NA non-coding upstream 108787 7673631 ~ 7680928 (-)
G1994184 NA non-coding upstream 149505 7714349 ~ 7714815 (-)
G1994196 NA non-coding upstream 167299 7732143 ~ 7732443 (-)
G1994075 NA other downstream 168443 7389245 ~ 7389568 (-)
LOC118936596 LOC106591161 other downstream 1113782 6391414 ~ 6444276 (-)
G1992485 NA other downstream 1569238 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1849327 5708268 ~ 5708684 (-)
G1991846 NA other downstream 2298229 5257722 ~ 5259782 (-)
LOC118944558 LOC106595801 other upstream 239000 7802643 ~ 7809933 (-)
LOC110515105 LOC106593850 other upstream 306338 7863456 ~ 7873075 (-)
LOC118944463 LOC106562776 other upstream 535476 8096974 ~ 8105982 (-)

Expression


Co-expression Network