LOC110526838 (LOC106587956)


Basic Information

Item Value
gene id LOC110526838
gene name LOC106587956
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7566616 ~ 7572156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964012.1
CTTGCCCTTTTACTTTTCTGCTGAGCTTTCAGGAAACAGAGTATATACCTTACAaatctgttcctgtctctgtcttgCCTGTAGCTCTCATCCCCACATCATTTACGTGTACCTTCACTGGGTTTATAGGAAGTAAAACAAAAGGACAGGCCAAAATGTCTGATAAAAAGATGACAACGAGCCGTAGGAACTACCTGAAGAGCTTGATGCTCCAGATCGCTGCCGGCTTGCTCGAGGCTGAGGCGGTCGAGGCTGAGGCAGAGAAGGCCAGGTACATGAAGGAGAACTGCCCTGCCCCAGAATTATTGGTATGCATGGCAGAGCTCACGGACTTGTGCAAGAAGCTCCATCAGAAGATCGAGAGGGTTGACGAGGAGAGATACGACATGTCAACCAAGGTGACCAAGTCCgagaaggagGTTGAGGACTTGAAGATGAAGGTAGTTGAACTGAATGGAAAGTTCAGGAAGCCCGTCCTGAAGAAAGTCCGCATGTCTGCTGATGCTATGCTCCAGGCTCTGCTGGGCTCCAAACACAAGGTGTCCATGGATCTGAGGTCCAACCTAAAGCAAGTCAAGAAGGAGGTCAAGGAAGAGGACAAAGATGCTGTGGGTGACTGGCGTAAGAACATCGAAGACAAATCAGACAGAAAGAAGATGTTTGAGACTACTAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGAGACTCATAAGGAGTAGATGTTCCTGGAGTTCCAGACAGGAAGATGTTTGAGACTCATAAGGAATAGATGTTCCTGGAGTTCCAGACAGGAAGATGATGTTTGAGACTACTAAGGAGTAGAAAGAAAAACCTGTCTGGAACTCTTCTGACACATAGCCACGTGTATAATCAAACGCTCCAGTTTAAACAAACAAACTATGTGTTCGGAGTTCCGTTTGTCCCCCAATTGGATATCTAGTCTTTTGTTTCACACGAAACACAAAAACAGctatgtgacccccccccccc

Function

NR:

description
PREDICTED: troponin I, fast skeletal muscle-like

GO:

id name namespace
GO:0030239 myofibril assembly biological_process
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964012.1 True 1001 mRNA 0.47 7 7566616 7572156

Neighbor

gene id symbol gene type direction distance location
LOC110526835 LOC105026486 coding downstream 1772 7558011 ~ 7564844 (-)
LOC118944524 LOC106562850 coding downstream 38372 7455221 ~ 7528244 (-)
LOC118944525 NA coding downstream 99996 7465120 ~ 7466620 (-)
LOC110526832 LOC106587935 coding downstream 127013 7406157 ~ 7439603 (-)
LOC110527022 LOC106587927 coding downstream 386937 7175082 ~ 7179679 (-)
LOC110526837 LOC106592039 coding upstream 7241 7579397 ~ 7596912 (-)
LOC118944548 NA coding upstream 24998 7597154 ~ 7602431 (-)
LOC118936603 LOC106587968 coding upstream 75242 7647283 ~ 7665132 (-)
LOC110526845 LOC106592787 coding upstream 172196 7744309 ~ 7751407 (-)
LOC118944558 LOC106595801 coding upstream 230487 7802643 ~ 7809933 (-)
G1994110 NA non-coding downstream 13606 7552651 ~ 7553010 (-)
G1994119 NA non-coding downstream 64200 7501921 ~ 7502416 (-)
G1994117 NA non-coding downstream 76426 7488825 ~ 7490190 (-)
G1994115 NA non-coding downstream 78207 7484073 ~ 7488409 (-)
G1994174 NA non-coding upstream 101475 7673631 ~ 7680928 (-)
G1994184 NA non-coding upstream 142193 7714349 ~ 7714815 (-)
G1994196 NA non-coding upstream 159987 7732143 ~ 7732443 (-)
G1994075 NA other downstream 177048 7389245 ~ 7389568 (-)
LOC118936596 LOC106591161 other downstream 1122387 6391414 ~ 6444276 (-)
G1992485 NA other downstream 1577843 5986431 ~ 5988773 (-)
G1992375 NA other downstream 1857932 5708268 ~ 5708684 (-)
G1991846 NA other downstream 2306834 5257722 ~ 5259782 (-)
LOC110515105 LOC106593850 other upstream 299026 7863456 ~ 7873075 (-)
LOC118944463 LOC106562776 other upstream 528164 8096974 ~ 8105982 (-)

Expression


Co-expression Network