LOC118944558 (LOC106595801)


Basic Information

Item Value
gene id LOC118944558
gene name LOC106595801
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7802643 ~ 7809933 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964553.1
ATGTCTTCACTGCAGCTCCTCGCTCTGGTGCTCATCATCATCCTCGGCTGTGTGCAGATTGGCAGAAGAGGGACGGAGCGTCTTTGGCCAGAGAACGCATTTGAAGGGACAAGGACGGACGTTGGCAGCTTTGGGTTGGCCCTGTACAGTGGCCTGTTTGCCTACGGAGGCTGgaaCCTGCCGCATGCCATCGTGATCTCCCTGCCCATGGTGACGGTGGTGTATGTCCTTACTAACCTGGTCTACTTCACCACCATCATCCCTGAGGAGATGGTGGCTTCAGAGGCCGTGGCAGTGGACTTTGGTAACTTCCACCTGGGCGTCATGGCCTGGATCATCTCTGTGTTTGTGGGACTGTCCTGTTTCGGCTCCGTCAACGGATTTCTCTTCACCtcctccagGTTGTTTTTGGTCGGGTCAAGAGAAGGTCACCTGCCCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATTTTCACCGTGAGTcctgtcattgtcaacaaagtTACACCTTCAGtatgaatatttatttatttaacctctcAATTGTTTGACTCCTGTTTTTATCAGAGTTTGACTCCTGTTGTGTGAATCAGTGTTTGACTCCTGTTGTGTGAATCAGTGTTTGACTCCTGTTGTGTGAATCAGTGTTTGACTCCTGTTGTGTGAATCAGTGTTTGAATCCTGTTGTGTGTATCAGTGTTTGACTCAGTGCATAGTGACAGGTgctggtgctgtatgttgtctctctctctcagtacatagtgatggtgct
>TU2282342
GTCCATGACCCACCCGATCCTGCTCACCCCTCAGCCTTCACTCATTTTCACCGTGAGTcctgtcattgtcaacaaagtTACACCTTCAGtatgaatatttatttatttaacctctcAATTGTTTGACTCCTGTTTTTATCAGAGTTTGACTCCTGTTGTGTGAATCAGTGTTTGACTCCTGTTGTGTGAATCAGTGTTTGAC
>TU2282311
gtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtaggaaCCTGCCGCATGCCATCGTGATCTCCCTGCCCATGGTGACGGTGGTGTATGTCCTTACTAACCTGGTCTACTTCACCACCATCATCCCTGAGGAGATGGTGGCTTCAGAGGCCGTGGCAGTGGTGGTAACTTCCACCTGGGCGTCATGGCCTGGATCATCTCTGTGTTTGTGGGACTGTCCTGTTTCGGCTCCGTCAACGGATTTCTCTTCACCtcctccagGTTGTTTTTGGTCGGGTCAAGAGAAGGTCACCTGCCCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCCATGACCCACCTGATCCTGCTCCCCCCTCAACCTTCACTCATCTTCACCGTGAGTCCTGTCATTATCATTCTGTTGTCC

Function

NR:

description
PREDICTED: large neutral amino acids transporter small subunit 1-like

GO:

id name namespace
GO:0006865 amino acid transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964553.1 False 1807 mRNA 0.51 5 7802643 7809933
TU2282342 False 202 lncRNA 0.42 1 7802788 7802989
TU2282311 True 463 TUCP 0.53 3 7803844 7805854

Neighbor

gene id symbol gene type direction distance location
LOC110526845 LOC106592787 coding downstream 51236 7744309 ~ 7751407 (-)
LOC118936603 LOC106587968 coding downstream 138160 7647283 ~ 7665132 (-)
LOC118944548 NA coding downstream 200212 7597154 ~ 7602431 (-)
LOC110526837 LOC106592039 coding downstream 205731 7579397 ~ 7596912 (-)
LOC110526838 LOC106587956 coding downstream 230487 7566616 ~ 7572156 (-)
LOC110515105 LOC106593850 coding upstream 53523 7863456 ~ 7873075 (-)
LOC118944444 LOC106587932 coding upstream 70329 7880262 ~ 7881911 (-)
LOC110514892 NA coding upstream 91162 7900918 ~ 7901646 (-)
LOC118944417 LOC106587940 coding upstream 116669 7926602 ~ 7937829 (-)
LOC118944418 NA coding upstream 118699 7928632 ~ 7930101 (-)
G1994205 NA non-coding downstream 6044 7793526 ~ 7796599 (-)
G1994220 NA non-coding downstream 21632 7779625 ~ 7781011 (-)
G1994216 NA non-coding downstream 36479 7765468 ~ 7766164 (-)
G1994215 NA non-coding downstream 37449 7764943 ~ 7765194 (-)
G1994213 NA non-coding downstream 38811 7763453 ~ 7763832 (-)
G1994234 NA non-coding upstream 11256 7821189 ~ 7821806 (-)
G1994250 NA non-coding upstream 32950 7842883 ~ 7843178 (-)
G1994245 NA non-coding upstream 48812 7858745 ~ 7859062 (-)
G1994204 NA non-coding upstream 50097 7860030 ~ 7861483 (-)
G1994075 NA other downstream 413075 7389245 ~ 7389568 (-)
LOC118936596 LOC106591161 other downstream 1358414 6391414 ~ 6444276 (-)
G1992485 NA other downstream 1813870 5986431 ~ 5988773 (-)
LOC118944463 LOC106562776 other upstream 290387 8096974 ~ 8105982 (-)
LOC110527031 LOC106587988 other upstream 880111 8564300 ~ 8805872 (-)
LOC110516734 LOC107593117 other upstream 1283147 9090166 ~ 9108249 (-)
G1994674 NA other upstream 1367105 9177038 ~ 9180705 (-)
LOC118944558 LOC106595801 other upstream 855 7802643 ~ 7809933 (-)

Expression

LOC118944558(LOC106595801) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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LOC118944558(LOC106595801) Expression in each Bioproject

Bar chart with 19 bars.
LOC118944558(LOC106595801) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network