LOC118944417 (LOC106587940)


Basic Information

Item Value
gene id LOC118944417
gene name LOC106587940
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7926602 ~ 7937829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963594.1
CACGCAAACTTTAAACACCGAGGCGTTGTAAAGATCTGATAATCAGCGCAGCATGTGTGTCCTCTGAACCGCACCCACTCGAATCAGCCTCCGTCCCCTGCGATGCGATGGTACAGTCCCATAGTGACGGCATCGCCTGGGAAGCGCTGAGGCCGACTGAGACTTGTTTTGCTACATTGTTGACGTTCTTGGTCaacatttttacattgttttgAGTTTTAGGAATACAGCAATAGcaatctttctttctttttttgtcaCTGTCTGATTCCTCACCAACCCTCTACGATTTTACTGCGCATCGAGCAAACTCTCCCGGAATCAGCCACCATGAAATGGATGTTCAAAGAGGATCATTCCCTGGAACATCGGTGTATAGAGTCGGCCAAAATACGCAGCAAGTACCCAGATAGGGTTCCGGTGATCGTGGAGAAGGTGTCTGGGTCTCAGATTGTGGACATCGACAAGAGGAAGTATTTGGTCCCCTCTGACATAACGGTGGCCCAGTTCATGTGGATCATCAGGAAACGCATCCAATTGCCCTCGGAGAAGGCCATCTTCCTCTTCGTCGATAAGACCGTGCCTCAGTCCAGCATCACCATGGGACAGCTGTACGAGAAGGAGAAGGACGAGGACGGGTTTTTATACGTGGCGTACAGCGGAGAGAACACCTTCGGTGTCTAGACCCGACAGAATACAACACCTGGCCCACCACCCACCGCCCACCGCCCTAACTCACACACCCCAGCCCCTGGGAGAAGCCCTGGGAAACCCCAGagaaaagaagaaaaaataaatagatGGAAGAGAGTGATCCGTTGAGTGAGAACCATCATGATGTGTGTCACCAGTCTGTCTAATCTATTCCTGCACATGTTTTGTATCGATGCTGTACACACTcatttattaatattattattattattattattatgatgatgataTGTATAGTGATACACATTGGAATGACTGTTTTGGTTTTGTCTGACGTTTTGTGCTTTACATTAGTTTAGGAGCTTttgagtttgtttgtttgttttttcattcgtgaaataatatttttttgtttttgaagtTTCCCTTTTAGTTTGGCTTTTATCCTTGAAGATTTATATTTCAAATAATTTTAACTATTTGAACGGTAAGGTAGCTGGATGACCTAACCAATAAAAAAATGTGAATGAT

Function

NR:

description
GABARAPL2 protein, partial

GO: NA

KEGG:

id description
K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963594.1 True 1185 mRNA 0.44 4 7926602 7937829
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110514892 NA coding downstream 24956 7900918 ~ 7901646 (-)
LOC118944444 LOC106587932 coding downstream 44691 7880262 ~ 7881911 (-)
LOC110515105 LOC106593850 coding downstream 53527 7863456 ~ 7873075 (-)
LOC118944558 LOC106595801 coding downstream 116669 7802643 ~ 7809933 (-)
LOC110526845 LOC106592787 coding downstream 175195 7744309 ~ 7751407 (-)
LOC110519426 LOC106587985 coding upstream 5423 7943252 ~ 7965019 (-)
LOC110518910 LOC106587992 coding upstream 133200 8071029 ~ 8089570 (-)
LOC118944485 NA coding upstream 141627 8079456 ~ 8080950 (-)
LOC118944463 LOC106562776 coding upstream 159145 8096974 ~ 8105982 (-)
LOC118944505 LOC105029587 coding upstream 191499 8129328 ~ 8143363 (-)
G1994243 NA non-coding downstream 2373 7912947 ~ 7924229 (-)
G1994247 NA non-coding downstream 14238 7887754 ~ 7912364 (-)
G1994268 NA non-coding downstream 17101 7908957 ~ 7909501 (-)
G1994289 NA non-coding upstream 33487 7971316 ~ 7977591 (-)
G1994290 NA non-coding upstream 37432 7975261 ~ 7977274 (-)
G1994294 NA non-coding upstream 49098 7986927 ~ 7988133 (-)
G1994302 LOC106594039 non-coding upstream 70949 8008778 ~ 8038089 (-)
G1994306 NA non-coding upstream 76250 8014079 ~ 8014454 (-)
LOC118936603 LOC106587968 other downstream 261470 7647283 ~ 7665132 (-)
G1994075 NA other downstream 537034 7389245 ~ 7389568 (-)
LOC110527031 LOC106587988 other upstream 752215 8564300 ~ 8805872 (-)
LOC110516734 LOC107593117 other upstream 1155251 9090166 ~ 9108249 (-)
G1994674 NA other upstream 1239209 9177038 ~ 9180705 (-)
G1994786 NA other upstream 1509764 9447593 ~ 9448494 (-)

Expression

LOC118944417(LOC106587940) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
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LOC118944417(LOC106587940) Expression in each Bioproject

Bar chart with 20 bars.
LOC118944417(LOC106587940) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network