LOC110519426 (LOC106587985)



Basic Information


Item Value
gene id LOC110519426
gene name LOC106587985
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 7943252 ~ 7965019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036964151.1
CCCGACGTTAAAACACGCCTGGATAGACTTTGGTCGGTCCCATGGCTGTCGAGGCTACGGGacgtttttttctttcttcttttctTCTTTGTGTACGTGTGACTAGAGACTCGGGTGTTATGTAACCGCTCAATCTCAGTTTCAATCACACAATGTTTCTCACGCGAATATCAGCGGGCGGTTCCATAGTGATAAGAGCTGCGGCACCGGACAAAGACGCTGGTTTTCCCCTCCAGTTGCAGAAGAGGGAGCGTCCAGATCCGGGGAAGGACCGATCATAAACTCGCGTCATGGctcAGAAGACAGTGCTGATTGTGTACGCCCATCAGAGTGGGGGGTCCTTTAACTCGGCAGCGAAGGATGTTGCCGTGGAAACCCTCAGACAGCAGGGCTACAAGGTCGTTGTGTCTGACCTTTACGCCATGAACTTCAGAGCCTCCGCCACAATGGAGGAtatcacagGTGAGGTGAAGAACCCGGAGCACTTCAAGTACGGAGAGGAGACCATGCATGCCTGGAAGGAGGGTCGACTCAGTGATGACATCATAGCTGAGCAGCGGAAAGTGGAGGCGGCGGAGCTCGTCATCTtccagtTCCCTATGTACTGGTTCAGCGTTCCAGCCATCATGAAGGGCTGGATAGACAGAGTCCTGAGTCAAGGCTTTGCCTTCTCGCTGCAGAAGATGTACAGCAATGGAATATTCAAGGACAAGAAAGCCATGTTGTCGTTCAGCACTGGGTCTATGCAGACTATGTACCGCCCTGACGGCCTCAACGGAGACATTAACGTCACACTGTGGCCCCTACAGAACGGCGTGCTTCACTTCTGTGGGTTCCAGGTGCTAGCCCCCCAGGTGTTCTGGTGTCCGGGACACAGTCCCCCCGCGAATCGGACAGCCATGCTGGATGGCTGGAGGGCCAGGCTGAAGACCCTGCTGGTCGAGCGACCCCTGACCTTTGCCCCCAGCGAGATGTTTGACCTGACCTTCCCCGGGGGCTTCGTGCTGCGGCCGGAGGTCAGGAAGGAGCAGAGCACCCGCCCCCACGGCATCACCACCGGACACCACCTGGGGAAACCCCTCCCCCCTGACAACCAGCTGAAGGCTGATGACCCCTCCCCCTGACAACCAGCTGAAGGCTGATGACCCCTCCCCCTGACAACCAGCTGAAGGCTGATGACCCCTCCCCCCTGACAAAAACTGCTTatttgtaaccagtttataatagcaataaggcacctcggggggggggggggttgcggtaaatggccaatattccacggctaaaggctgtatccaggcactccgcgttgcgtcgtggttaagaacagcccttagccgtcgTAAATTGGCCATAAACCACATCCCCCCCCTCgcgccttattgcttaagtataacattggatggtcaGTTATTATGGTCAAGTCAAATTGACAgagttgttgtgaagatggggagaggtatgtctgTTATAAATAAAAAGATGTTCTGATTTTTTGAAACATCAATAAACTGCACTAGTTGTTCAGACT

Function


NR:

description
PREDICTED: NAD(P)H dehydrogenase [quinone] 1-like

GO:

id name namespace
GO:0042221 response to chemical biological_process

KEGG:

id description
K00355 NQO1; NAD(P)H dehydrogenase (quinone)

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036964151.1 True 1531 mRNA 0.54 6 7943252 7965019
Loading

Neighbor


gene id symbol gene type direction distance location
LOC118944417 LOC106587940 coding downstream 5423 7926602 ~ 7937829 (-)
LOC118944418 NA coding downstream 13151 7928632 ~ 7930101 (-)
LOC110514892 NA coding downstream 41606 7900918 ~ 7901646 (-)
LOC118944444 LOC106587932 coding downstream 61341 7880262 ~ 7881911 (-)
LOC110515105 LOC106593850 coding downstream 70177 7863456 ~ 7873075 (-)
LOC110518910 LOC106587992 coding upstream 106010 8071029 ~ 8089570 (-)
LOC118944485 NA coding upstream 114437 8079456 ~ 8080950 (-)
LOC118944463 LOC106562776 coding upstream 131955 8096974 ~ 8105982 (-)
LOC118944505 LOC105029587 coding upstream 164309 8129328 ~ 8143363 (-)
LOC110527031 LOC106587988 coding upstream 599281 8564300 ~ 8805872 (-)
G1994243 NA non-coding downstream 19023 7912947 ~ 7924229 (-)
G1994247 NA non-coding downstream 30888 7887754 ~ 7912364 (-)
G1994268 NA non-coding downstream 33751 7908957 ~ 7909501 (-)
G1994289 NA non-coding upstream 6297 7971316 ~ 7977591 (-)
G1994290 NA non-coding upstream 10242 7975261 ~ 7977274 (-)
G1994294 NA non-coding upstream 21908 7986927 ~ 7988133 (-)
G1994302 LOC106594039 non-coding upstream 43759 8008778 ~ 8038089 (-)
G1994306 NA non-coding upstream 49060 8014079 ~ 8014454 (-)
LOC118944558 LOC106595801 other downstream 137398 7802643 ~ 7809933 (-)
LOC110526845 LOC106592787 other downstream 191875 7744309 ~ 7751407 (-)
LOC118936603 LOC106587968 other downstream 278120 7647283 ~ 7665132 (-)
G1994075 NA other downstream 553684 7389245 ~ 7389568 (-)
LOC110516734 LOC107593117 other upstream 1128061 9090166 ~ 9108249 (-)
G1994674 NA other upstream 1212019 9177038 ~ 9180705 (-)
G1994786 NA other upstream 1482574 9447593 ~ 9448494 (-)

Expression


LOC110519426(LOC106587985) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
End of interactive chart.

LOC110519426(LOC106587985) Expression in each Bioproject

Bar chart with 21 bars.
LOC110519426(LOC106587985) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
End of interactive chart.

Co-expression Network