LOC110526841 (LOC106587964)


Basic Information

Item Value
gene id LOC110526841
gene name LOC106587964
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8143737 ~ 8148499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964181.1
TAAAATAATTCCCTCAATCATTCAAGGTTGTTTCGCTTCGACTGCAGAGAAGGAAGAAGACGTCTCGGACGAACCAGTGGTTTATAAGTACAGCAGCGCCACGAATTTAGTGTAATGTCAGAGATCCAGGATCCGAAATCTGTACAGGACCTGACTGGGGTGGTCCAGACATTGCTGCAGCAGATGCAGGATAAATTCCAGACCATGTCAGACCAGATCATTGGAAGAATCGATGAGATGAGTGGCCGCATCGATGACCTGGAGAAGAACATTGGTGACCTGATGACCCAGGCTGGCgtggaggagatggaggcggAGAACAAGGTCAAGGAGGAACAGGGCTCTGCTTAAAAGGTTTCCAAGTAACAGGATGGTGGAGACTATAAATGGGAAACAGACAATTTTTCAGGAGTATTGTAGTATTTAaggttttttgttttgttttaattaTTAATATTTTAATTTACTGTGTGTGTAACATGTTTTATATTAACTCTTGTAATAATGTTCActgtcaacttttttttttttttttttgaattgaTATTTAACTTAACTTGAGACACTATCCTGAATAATGGCTCACTCAGGTGACTCAGGCTCACTCAGGTGACtcgctgggccagtaactgatTATGTCAACTAGCCAATTGATCATTTTAACAATATTTCAACACAAAACATTTTACTGCTATTCAAATGTTCTAAAAACATGTTGTGTGTTAAGATTTCTTTATCACTTTGTCTTTTTCACAATAAACCAGGGCTTGCATACA

Function

NR:

description
heat shock factor-binding protein 1-like

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
K19765 HSBP1; heat shock factor-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964181.1 True 776 mRNA 0.39 4 8143737 8148499
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110518912 LOC106561181 coding upstream 75018 8067181 ~ 8068719 (+)
LOC110514403 LOC106594039 coding upstream 105807 8036351 ~ 8037930 (+)
LOC110514410 LOC106594039 coding upstream 115809 8020378 ~ 8027928 (+)
LOC110518906 LOC106590762 coding upstream 133869 8008332 ~ 8009868 (+)
LOC118944473 ccl13 coding upstream 219097 7912167 ~ 7924640 (+)
LOC110526843 LOC106587945 coding downstream 161 8148660 ~ 8188025 (+)
LOC110526872 LOC106587948 coding downstream 54020 8202519 ~ 8276135 (+)
LOC110526874 LOC106587947 coding downstream 141944 8290443 ~ 8349566 (+)
LOC118944501 LOC106593603 coding downstream 228540 8377039 ~ 8461168 (+)
LOC118944559 NA coding downstream 326680 8475179 ~ 8478193 (+)
G1993589 NA non-coding upstream 5363 8134457 ~ 8138374 (+)
G1993583 NA non-coding upstream 29209 8112980 ~ 8114528 (+)
G1993584 NA non-coding upstream 29853 8113266 ~ 8113884 (+)
G1993582 NA non-coding upstream 33585 8108210 ~ 8110152 (+)
G1993575 NA non-coding upstream 60331 8079340 ~ 8083406 (+)
G1993608 NA non-coding downstream 13778 8162277 ~ 8162828 (+)
G1993613 NA non-coding downstream 23789 8172288 ~ 8172645 (+)
G1993624 NA non-coding downstream 70232 8218731 ~ 8219414 (+)
G1993640 NA non-coding downstream 95885 8244384 ~ 8246707 (+)
G1993647 NA non-coding downstream 107934 8256433 ~ 8257100 (+)
G1993550 NA other upstream 101716 8038186 ~ 8042021 (+)
G1993521 NA other upstream 184273 7958777 ~ 7959464 (+)
G1993435 NA other upstream 433972 7706117 ~ 7709765 (+)
G1993431 NA other upstream 475262 7664992 ~ 7668475 (+)
G1993378 NA other upstream 563329 7566562 ~ 7580408 (+)
LOC110512379 LOC106587994 other downstream 389440 8537913 ~ 8553492 (+)
G1993771 herc1 other downstream 518102 8666601 ~ 8668267 (+)
G1993783 NA other downstream 548675 8697174 ~ 8698123 (+)
G1994757 LOC106613263 other downstream 1242069 9390568 ~ 9390933 (+)
G1994851 NA other downstream 1416544 9560723 ~ 9566154 (+)

Expression

LOC110526841(LOC106587964) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110526841(LOC106587964) Expression in each Bioproject

Bar chart with 21 bars.
LOC110526841(LOC106587964) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
End of interactive chart.

Co-expression Network