Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110512379 |
| gene name | LOC106587994 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 8537913 ~ 8553492 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| circadian-associated transcriptional repressor-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036964320.1 | False | 2064 | mRNA | 0.58 | 6 | 8537913 | 8553492 |
| XM_036964321.1 | False | 2010 | mRNA | 0.58 | 7 | 8537913 | 8553492 |
| TU2281607 | True | 1023 | TUCP | 0.57 | 5 | 8537939 | 8551367 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944559 | NA | coding | upstream | 59720 | 8475179 ~ 8478193 (+) |
| LOC118944501 | LOC106593603 | coding | upstream | 77808 | 8377039 ~ 8461168 (+) |
| LOC110526874 | LOC106587947 | coding | upstream | 188347 | 8290443 ~ 8349566 (+) |
| LOC110526872 | LOC106587948 | coding | upstream | 261778 | 8202519 ~ 8276135 (+) |
| LOC110526843 | LOC106587945 | coding | upstream | 349888 | 8148660 ~ 8188025 (+) |
| LOC118944551 | NA | coding | downstream | 7115 | 8560607 ~ 8564393 (+) |
| LOC118944552 | NA | coding | downstream | 42420 | 8595912 ~ 8596441 (+) |
| LOC118944519 | NA | coding | downstream | 278791 | 8832283 ~ 8834831 (+) |
| LOC118944518 | LOC106609706 | coding | downstream | 326973 | 8880465 ~ 8893160 (+) |
| LOC118944396 | idh3a | coding | downstream | 411450 | 8964942 ~ 8981623 (+) |
| G1993699 | NA | non-coding | upstream | 71633 | 8464452 ~ 8466280 (+) |
| G1993690 | NA | non-coding | upstream | 158067 | 8379469 ~ 8379846 (+) |
| G1993681 | NA | non-coding | upstream | 178562 | 8358497 ~ 8359351 (+) |
| G1993677 | NA | non-coding | upstream | 185362 | 8352253 ~ 8352551 (+) |
| G1993734 | NA | non-coding | downstream | 30681 | 8584173 ~ 8585082 (+) |
| G1993745 | NA | non-coding | downstream | 39620 | 8593112 ~ 8595082 (+) |
| G1993762 | NA | non-coding | downstream | 91314 | 8644806 ~ 8645360 (+) |
| G1993766 | NA | non-coding | downstream | 98758 | 8652250 ~ 8653286 (+) |
| G1993593 | LOC106587964 | other | upstream | 389414 | 8143752 ~ 8148919 (+) |
| G1993550 | NA | other | upstream | 495892 | 8038186 ~ 8042021 (+) |
| G1993521 | NA | other | upstream | 578449 | 7958777 ~ 7959464 (+) |
| G1993435 | NA | other | upstream | 828148 | 7706117 ~ 7709765 (+) |
| G1993431 | NA | other | upstream | 869438 | 7664992 ~ 7668475 (+) |
| G1993771 | herc1 | other | downstream | 113109 | 8666601 ~ 8668267 (+) |
| G1993783 | NA | other | downstream | 143682 | 8697174 ~ 8698123 (+) |
| G1994757 | LOC106613263 | other | downstream | 837076 | 9390568 ~ 9390933 (+) |
| G1994851 | NA | other | downstream | 1011551 | 9560723 ~ 9566154 (+) |
| G1998628 | NA | other | downstream | 4668545 | 13222037 ~ 13222681 (+) |
