LOC110512379 (LOC106587994)


Basic Information

Item Value
gene id LOC110512379
gene name LOC106587994
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 8537913 ~ 8553492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964320.1
TGTACGCTACTACATCACGACATTCACCGCATCCCTACAACGACCTGGGGGGGAGCCCGGCCATGAGCGGAGTGTCCTGAAGTCACCGCTCATAGGAGACGAAGGGGAAGCCACTATAGTCACTTCTTCTTCTGGTGTGTGATGCTCTCTAGTGGATGAGAGCCCGTAGCCCTGCTCTCTAGTGGATGAGAGCCCGTAGTCCTGCAATCCGTTGGAGGATGTCTGCGTCTGACTCTGATTACTCAATAGACTACCTGGCCAGTGACAGTGAGGATAATGACAACGACAGCGGCGTGGGACTGAGCCCCGACGGACACACAGTCAGGACGGCACCTTCATCCTCCGTACCTCcaccctcatcatcatcattaagggACTCTCCCAGTAACACTGACTGTGGTTCTTCTAAGGACGGGATCTCAAGGCTAAACAGGAATTCCAACCACGAGGAACCCCATAGGCTGAGCAGTGACACAGGAGATTTCGGGGACTCTGGCCTCAGTAGGGACGGGGACAGTGATAATTCCAACGATGCTGACCCTCGACTGAGCAGGGACATAGATTGTAGTTGTGGTGGCACCCCTCCTCCAGCCACCTACGAGGGGGGCCGCTGCCCCAGTGAGACCCAGGGATGTAGTCCTACTGTGTACGGtcagcagcagcagagactgtCATGGAGCCCGACGGCCTCCTCTCAAGCCTGGGATAGAAACAGTAGACAGAGTGGCACTGGGAAGCCTGGGCAGGGCAGGAAGAGGGCACACAGCCATGGACGGCATCCCGGAGACcaaggctgtaggaacagagacCCAACGGAACCTGGGGAGCCTGAGAAGGATCAGCTGTTTGCCCAGAAGTGTATGGAGCTCCAGCGTTACCTCCATCCCCTGTCTTCCATCCTGAGAGGCCTGTGCTCTGGGAGGTACTCAGAACGTCTTAGCCGTTTCCAGGAGAGCGTTGCTATGGACCGGATCCAGAGAATAATGGGAGTCCTCCAGAACCCAAACATGAGTGAGCGCTACGTCAGTGTGATCCTGAAGATGGAAGCGATGCTCCATTGCTGGTTTCCTCAAGTCAGAGCCcgcccagacccagacccaggccCAGACCCaggcccagacccagacccagacccagaccagcaCAATGACAGCCAGGAAGAGCACCACACTCCAGCTAAGAGACACAAGCAGTACCAGGCCCCAGCCCAGCCACCACCTCCAGCCTCTCCTCCCGTCGTCTCCCCCCCAGAGGGTGACCACCACCCAGCCCTGCGAGCCTCCGACGGACCCCTGCCCGGCTCCTTCCCCTACTCCTCTGCCACTCATCTCAAACGTCTCCACACCGCCCCCATCTGCTCCtccaacacagagacagagacagcccaGCAAGAGCCACCGGGCCTGGGCAGGCCCTCCCTCGCCTGCTCCCTGGGATCCAACCGTCCAGCCGACGACCAGGAACAGACCCAAGACGACGCGGTCTCCTCCAGCACTGACCCCCAGGGGAGCACTGTGGACCCCCACGTCCAGACCCACCCTTACAGAGTCAGACCCCGAGCCCACCGACGAGGGCCTCCGTCGGGGAAGATCAGCTCGCCCTGCCTGGAGAGGCTGCTCCAGTCCAAGGAGAGCATCATCTCACCCAGAAACATGGGAGGTCAGAGTCCGGGAGGTGGCGGGGAGAGCATCATCTCACCCAGAAACATGGGAGGTCAGAGTCCGGGAGGTGGTGGGGAGAGCAGCCGTTCGTAACAGCTAGACTCAGACATGGTCCATGGAGGAGATAAGGACTGATCTGGGCACAGAGTTGACCCGGGACAGACAGAGCTGTATCTTTCCACAACAGGCTCTCCAATACAGCAGGGGGCAAAGGTCGGTGTCTGAGCGGGATGCTGTCTCTTTAAGAGCTGTGTGTCATGTGATCCATCATGTGATCCAACTACGGTTGGTTTATCTGCAGTAAGAcactgagacatggaggagaggagatatattatagacctgcagtaagacacagagacatggaggagacatattatagacctgcagtaagacacagaga
>XM_036964321.1
TGTACGCTACTACATCACGACATTCACCGCATCCCTACAACGACCTGGGGGGGAGCCCGGCCATGAGCGGAGTGTCCTGAAGTCACCGCTCATAGGAGACGAAGGGGAAGCCACTATAGTCACTTCTTCTTCTGGTGTGTGATGCTCTCTAGTGGATGAGAGCCCGTAGCCCTGCTCTCTAGTGGATGAGAGCCCGTAGTCCTGCAATCCGTTGGAGGATGTCTGCGTCTGACTCTGATTACTCAATAGACTACCTGGCCAGTGACAGTGAGGATAATGACAACGACAGCGGCGTGGGACTGAGCCCCGACGGACACACAGTCAGGACGGCACCTTCATCCTCCGTACCTCcaccctcatcatcatcattaagggACTCTCCCAGTAACACTGACTGTGGTTCTTCTAAGGACGGGATCTCAAGGCTAAACAGGAATTCCAACCACGAGGAACCCCATAGGCTGAGCAGTGACACAGGAGATTTCGGGGACTCTGGCCTCAGTAGGGACGGGGACAGTGATAATTCCAACGATGCTGACCCTCGACTGAGCAGGGACATAGATTGTAGTTGTGGTGGCACCCCTCCTCCAGCCACCTACGAGGGGGGCCGCTGCCCCAGTGAGACCCAGGGATGTAGTCCTACTGTGTACGGtcagcagcagcagagactgtCATGGAGCCCGACGGCCTCCTCTCAAGCCTGGGATAGAAACAGTAGACAGAGTGGCACTGGGAAGCCTGGGCAGGGCAGGAAGAGGGCACACAGCCATGGACGGCATCCCGGAGACcaaggctgtaggaacagagacCCAACGGAACCTGGGGAGCCTGAGAAGGATCAGCTGTTTGCCCAGAAGTGTATGGAGCTCCAGCGTTACCTCCATCCCCTGTCTTCCATCCTGAGAGGCCTGTGCTCTGGGAGGTACTCAGAACGTCTTAGCCGTTTCCAGGAGAGCGTTGCTATGGACCGGATCCAGAGAATAATGGGAGTCCTCCAGAACCCAAACATGAGTGAGCGCTACGTCAGTGTGATCCTGAAGATGGAAGCGATGCTCCATTGCTGGTTTCCTCAAGTCAGAGCCcgcccagacccagacccaggccCAGACCCaggcccagacccagacccagacccagaccagcaCAATGACAGCCAGGAAGAGCACCACACTCCAGCTAAGAGACACAAGCAGTACCAGGCCCCAGCCCAGCCACCACCTCCAGCCTCTCCTCCCGTCGTCTCCCCCCCAGAGGGTGACCACCACCCAGCCCTGCGAGCCTCCGACGGACCCCTGCCCGGCTCCTTCCCCTACTCCTCTGCCACTCATCTCAAACGTCTCCACACCGCCCCCATCTGCTCCtccaacacagagacagagacagcccaGCAAGAGCCACCGGGCCTGGGCAGGCCCTCCCTCGCCTGCTCCCTGGGATCCAACCGTCCAGCCGACGACCAGGAACAGACCCAAGACGACGCGGTCTCCTCCAGCACTGACCCCCAGGGGAGCACTGTGGACCCCCACGTCCAGACCCACCCTTACAGAGTCAGACCCCGAGCCCACCGACGAGGGCCTCCGTCGGGGAAGATCAGCTCGCCCTGCCTGGAGAGGCTGCTCCAGTCCAAGGAGAGCATCATCTCACCCAGAAACATGGGAGGTCAGAGTCCGGGAGGTGGTGGGGAGAGCAGCCGTTCGTAACAGCTAGACTCAGACATGGTCCATGGAGGAGATAAGGACTGATCTGGGCACAGAGTTGACCCGGGACAGACAGAGCTGTATCTTTCCACAACAGGCTCTCCAATACAGCAGGGGGCAAAGGTCGGTGTCTGAGCGGGATGCTGTCTCTTTAAGAGCTGTGTGTCATGTGATCCATCATGTGATCCAACTACGGTTGGTTTATCTGCAGTAAGAcactgagacatggaggagaggagatatattatagacctgcagtaagacacagagacatggaggagacatattatagacctgcagtaagacacagaga
>TU2281607
CCGCATCCCTACAACGACCTGGGGGGGAGCCCGGCCATGAGCGGAGTGTCCTGAAGTCACCGCTCATAGGAGACGAAGGGGAAGCCACTATAGTCACTTCTTCTTCTGGTGTGTGATGCTCTCTAGTGGATGAGAGCCCGTAGCCCTGCTCTCTAGTGGATGAGAGCCCGTAGTCCTGCAATCCGTTGGAGGATGTCTGCGTCTGACTCTGATTACTCAATAGACTACCTGGCCAGTGACAGTGAGGATAATGACAACGACAGCGGCGTGGGACTGAGCCCCGACGGACACACAGTCAGGACGGCACCTTCATCCTCCGTACCTCcaccctcatcatcatcattaagggACTCTCCCAGTAACACTGACTGTGGTTCTTCTAAGGACGGGATCTCAAGGCTAAACAGGAATTCCAACCACGAGGAACCCCATAGGCTGAGCAGTGACACAGGAGATTTCGGGGACTCTGGCCTCAGTAGGGACGGGGACAGTGATAATTCCAACGATGCTGACCCTCGACTGAGCAGGGACATAGATTGTAGTTGTGGTGGCACCCCTCCTCCAGCCACCTACGAGGGGGGCCGCTGCCCCAGTGAGACCCAGGGATGTAGTCCTACTGTGTACGGtcagcagcagcagagactgtCATGGAGCCCGACGGCCTCCTCTCAAGCCTGGGATAGAAACAGTAGACAGAGTGGCACTGGGAAGCCTGGGCAGGGCAGGAAGAGGGCACACAGCCATGGACGGCATCCCGGAGACcaaggctgtaggaacagagacCCAACGGAACCTGGGGAGCCTGAGAAGGATCAGCTGTTTGCCCAGAAGTGTATGGAGCTCCAGCGTTACCTCCATCCCCTGTCTTCCATCCTGAGAGGCCTGTGCTCTGGGAGGTACTCAGAACGTCTTAGCCGTTTCCAGGAGAGCGTTGCTATGGACCGGATCCAGAGAATAATGGGAGTCCTCCAGAACCCAAACATGAGTGAGCGCTACGTCAGTGTGATCCTGAAGATGGAAGCG

Function

NR:

description
circadian-associated transcriptional repressor-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964320.1 False 2064 mRNA 0.58 6 8537913 8553492
XM_036964321.1 False 2010 mRNA 0.58 7 8537913 8553492
TU2281607 True 1023 TUCP 0.57 5 8537939 8551367

Neighbor

gene id symbol gene type direction distance location
LOC118944559 NA coding upstream 59720 8475179 ~ 8478193 (+)
LOC118944501 LOC106593603 coding upstream 77808 8377039 ~ 8461168 (+)
LOC110526874 LOC106587947 coding upstream 188347 8290443 ~ 8349566 (+)
LOC110526872 LOC106587948 coding upstream 261778 8202519 ~ 8276135 (+)
LOC110526843 LOC106587945 coding upstream 349888 8148660 ~ 8188025 (+)
LOC118944551 NA coding downstream 7115 8560607 ~ 8564393 (+)
LOC118944552 NA coding downstream 42420 8595912 ~ 8596441 (+)
LOC118944519 NA coding downstream 278791 8832283 ~ 8834831 (+)
LOC118944518 LOC106609706 coding downstream 326973 8880465 ~ 8893160 (+)
LOC118944396 idh3a coding downstream 411450 8964942 ~ 8981623 (+)
G1993699 NA non-coding upstream 71633 8464452 ~ 8466280 (+)
G1993690 NA non-coding upstream 158067 8379469 ~ 8379846 (+)
G1993681 NA non-coding upstream 178562 8358497 ~ 8359351 (+)
G1993677 NA non-coding upstream 185362 8352253 ~ 8352551 (+)
G1993734 NA non-coding downstream 30681 8584173 ~ 8585082 (+)
G1993745 NA non-coding downstream 39620 8593112 ~ 8595082 (+)
G1993762 NA non-coding downstream 91314 8644806 ~ 8645360 (+)
G1993766 NA non-coding downstream 98758 8652250 ~ 8653286 (+)
G1993593 LOC106587964 other upstream 389414 8143752 ~ 8148919 (+)
G1993550 NA other upstream 495892 8038186 ~ 8042021 (+)
G1993521 NA other upstream 578449 7958777 ~ 7959464 (+)
G1993435 NA other upstream 828148 7706117 ~ 7709765 (+)
G1993431 NA other upstream 869438 7664992 ~ 7668475 (+)
G1993771 herc1 other downstream 113109 8666601 ~ 8668267 (+)
G1993783 NA other downstream 143682 8697174 ~ 8698123 (+)
G1994757 LOC106613263 other downstream 837076 9390568 ~ 9390933 (+)
G1994851 NA other downstream 1011551 9560723 ~ 9566154 (+)
G1998628 NA other downstream 4668545 13222037 ~ 13222681 (+)

Expression


Co-expression Network