LOC110516734 (LOC107593117)


Basic Information

Item Value
gene id LOC110516734
gene name LOC107593117
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9090166 ~ 9108249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963698.1
TCATGAGACTCTCAAAAGGATTACCTTGAACTGaagtcatgagaccaaggcttgAACAAAGAGCCGGCTCACATGCTCATCATATGAGCCCAGCTTCATAAAGTCATGTCGTTTCATATCTGCTGGGCTTCAGTGGGTTAGGAGGACCCGGGTGAGAGCAGCCAGAGAGCTGGAGATAGGGCTGGGCTGCTGTGAAGTTTCTTCAGAGTTCTTAGAGTTATTGAGAGTTCTTGAGTTCTTAGAGAGTTCTTGAGTTCTAAGAGAGTTCTTGAGTTCTTAGAGAGTTCTTGAGTTCTAAGAGAGTTCTTGAGTTCTTAGAGAGTTCTTGAGTTCTAAGAGAGTTCTTAGAGTTATTGAGAGTTCTTAGAGTTATTGAGAGTTCTTAGAGTTCTTGAGTTCTAAGAGAGTTCTTGAGTTCTTGAGTTCTTCTTTACTAGTAGTTGGGTGTTGAGTTACTCTTGTGCTCCTCTTGAAGTTTCAACTGGTTGCTCTTCAACTCAGGGCCCACAAAGCTTGGATTGAGAAGACGTTTCAGAAAAGAGAGTGTATCCAAATATTTCCCAGCAAAGAACCAAACAGGTGCAGTTGTGGTCAGGTAGTGAACCAGCATGTGGCCATCATTCCGGGGGCGACCACTAGGGCGGCGGAAGAGGCAGGTCAGATCGGTCAGGGGGCGGTGCCCATGGAACGCTGGTCCGTGCTTAAACACACACAGGCCACGCCCACAGACACATACGGCATCATGGAGTTCCAGGGAGGAGGACATGTCAACAAGGCCATGtACATCCGTGTGGCGTACGATTCCAAGCCAGACAACATGCTCCACCTGATGGTGAAAGACTGGCAGCTGGAGCTCCCCACCCTGCTCATCTCCGTCCACGGGGGACTGCAGAACTTCGACCTGCAGCCCAAACTAAAACAGGTGTTTGGAAAGGGTCTGATCCAGGCTGCGGTCACCACCGGAGCCTGGATACTCACTGGCGGAGTCAGCACTGGGGTGATCCGGCATGTAGGAGATGCGTTGAAGGACCACTCCTCAAAGTCCAGGGGGAAAGTATGTGCCATCGGGATCGCTCCATGGGGCATCGTGGAGAACAAGGAGGATCTGATAGGAAGAGACGTGACACGTCCGTACCAGGCCATGTCCAACCCCATGTCCAAGCTGTCTGTCCTCAACAACAGCCACTCCCACTTCATCCTAGCAGATAACGGGACCCAGGGAAAGTACGGCGCAGAGGTCCGTCTTCGCCGTCAGCTGGAGAAACACATCTCCCTGCAGAAGATCAACACACGTTTGGGTCAGGGGGTGCCTCTGGTCTGTCTGATCCTGGAGGGGGGTCCCAACGTCATCTCCATAGTCCTGGAGAGCCTGAGGGAGGACCCCCCTGTCCCGGTGGTGGTCTGTGACGGCAGTGGACGGGCCTCTGACATCATCTCCTTCGCACACAGATACTCTGAGGACGACGGctTGGTCAGTGATAGCGTGAAGGATCAGCTCCTGGTCACCATCCAGAAGACGTTTAACTACAACCGCGGTCAGGCCCAGCAGATCTTCCTCATGGTGATGGAATGCATGAAGAAACGATCTCTGGTGAGTAGGGAAGACATTATTATACAGGATATGTTCCCATAACTTATGACGCACGCAATGCATTGGACAGGAATTCTAAGTGTTATGCTAATAATGCTAACGAATTCCTGTCAAATGCTTTGCGTGTGTCATAAGTGACGGTTTTAGTATCTAGTATCTAGTATTTTTTTTAAGCCTTACGTACATTTTAGAAACACTTTTTTTTACCACATACTGTAAGTAAAAACCTAACGTATTCAAAATATATTCAAACATTAAAGATTATAATTTGTGATGAAAGTAGTGTGACATTTTAATAATTGAATTGTTTTATGTTAATTTGATGCTTCAATAAAACCGTCCCATT
>TU2282921
CAGCTTCATAAAGTCATGTCGTTTCATATCTGCTGGGCTTCAGTGGGTTAGGAGGACCCGGGTGAGAGCAGCCAGAGAGCTGGAGATAGGGCTGGGCTGCTGTGAAGTTTCTTCAGAGTTCTTAGAGTTATTGAGAGTTCTTGAGTTCTTAGAGAGTTCTTGAGTTCTAAGAGAGTTCTTGAGTTCTTAGAGAGTTCTTGAGTTCTAAGAGAGTTCTTGAGTTCTTAGAGAGTTCTTGAGTTCTAAGAGAGTTCTTAGAGTTATTGAGAGTTCTTAGAGTTATTGAGAGTTCTTAGAGTTCTTGAGTTCTAAGAGAGTTCTTGAGTTCTTGAGTTCTTCTTTACTAGTAGTTGGGTGTTGAGTTACTCTTGTGCTCCTCTTGAAGTTTCAACTGGTTGCTCTTCAACTCAGGGTAAGTGGTTCTTCATTTTTTCTGATGTATCGAGGAAACTCTGTATCTTCTTTGGTGTAGAAACTTGTGATGGTCTACTTTGTTCATGTCTTATAGGCAGGGGATTCATTTGAGGTGCAATAGAGAGGAGTTGAGTTATGTTGCACCAACTTAGGTTGGGAGACAACATACAGAGGGAAATGGAATAGAAATCTGATGAAATTATATTTAAagaaacatttaaaataacaATTTAGAGACAGTTCCATCGACGGACAAATAACCTCTATGTTAACCTCTATAACCACaggttccccagtaggctgtcattgcagggtagcctagtggataaataacctctataaccacaggttccccagtaggctgtcattgcagggtaacctagtggataaATAACCTCTAAAACCACaggttccccagtaggctgtcattgcagggtagcctagtggataaataacctctataaccacagGTTCCCCTGTAGGCTGTcattgcagggtagcctagtggataaaTAACCTCTATGTTATTAACCTCTATAACCACAGGTTCCCCTGTAGACTGTcattgcagggtagcctagtggataaaTAACCTCTATGTTAACCTCTATAACCACAGGTTCCCcagtagactgtcattgtaaatgagaactgacttgcctcgttacaGAAAGGTTAAATACCAAAAAAACTCTATGTTACTTAGTCTCCAAAACAACTCCACATGAGGAATAGATCTCTGAACAAAATGCTTATTTCGGAAGCACCCTGATTTTAAACGTTCATAATTGAATTGTTATAAAAGTAAATTAGTTTCAAAACTTTGGTCAATCTAAAACTTTAGTCAATCTGTGGTCAATCTAAGTAATCTGTACTCTATAGTGTGTAGGGTGTTAGGAATTAGGAGTTAGGTGTTAGGaattaggagttaggagttaggagttaggagttaagtgttaggagttaggagttaggtgttaggtgttaggagttaggtgttaggtgttaggagttaggagttactATTTAGGAGTTAagtgttaggagttaggagttaggtgttaggtgttaggagttaggagttaggtgttaggtgttaggagttaggagttaggagttaggtgttaggtgttaggtgttAGGAGTTAGTCTTCTTTGTCCCTTTTCACCTTTCTTTCCCAGGAACTGATCTTGTTAGTTACAGAATTTACTGTCTTCTTTGTCCCTTTTTCACCTTTCTTTCCCAGGAACTGATCTTGTTAGTTAGAGAATTTACTGTCTTCTTTGTCCCTTTTTCACCTTTCTTTCCCACGAACTGATCTTGTTAGTTAGAGAATTTACTGTCTTCTTTGTCCCTTTTTCACCTTTCTTTCCCAGGAACTGATCTTGTTAGTTAGAGAATTTACTGTCTTCTTTGTCCTTTTTCATCTTTCTTTCCCAGGAACTGATCTTGTTAGTTAGAGAATTTACTGTCTTCTTTGTCCTTTTTCATCTTTCTTTCCCAGGAACTGATCTTGTTAGTTAGAGAATTTACTGTCTTCTTTGTCCTTTTTCATCTTTCTTTCCCAGGAACTGATCTTGTTAGTTAGAGAATTTACTGTCTTCTTTGTCCTTTTTCATCTTTCTTTCCCAGGAACTGGTTGAAACTAGATTTTAAACAAGTTCAAATTGATTCCGCTCTGAGTGGTTGTTTATGAATTAGACTGTTTACCAGGTTGATATTAATGAGCTGTAATATGTTGTTTATGAATTAGACTGTTTACCAGGTTGATATTAATGAGCTGTAATATGTTGTTTATGAATTAGACTGTTTACCAGGTTGATAATAATGAGTTGTGGAACGCTGTCCGACTCCATTGAGTCGTTGACTAGATGAGTTTGATATTATCTGCGGCTAAGAGGCCCATGTTTACTAATTGTTTTACTATTTTAACCATTTGCAATGAACAAACTTTTACATCCAAATCTctgaaataatattttttttgttaaagCTTGAGTAAAACTATGTGTGAGGTTAGTTACCGTTTCAGGAGCTATAAATACGAACTATTTGTTATATGCAGTATAGACAATAATCCAAGATGTGCCAGGTCACTATTTGTTGGGACTTGGGTTTAATCCACCATTATCCAGAGTGAATGTATTTCCCAGAGTGCTCTGCGACAGACAGGACCCCCTGCCCCATTGCTTCTGCAGTACAGTGACCTGTTAATCACTACGGAAAAACCACAACACAGAGTCATTAGGTTTACTTGGCGTCACATGTACACGCATGAATGCATACAAGcacaaattcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcacacagacccacacacacacacacacacacacacacacacacacacacacacacacacacacactgcactgttctttGCTGGAGCGTTTAGGCAGGATTAGGTGACCAGCGTTGTAGTCAAGAGGATTTGTTCCATCAAGAAATAAGAGTTTTTGTGCCTGAACGTTACAATAGAAAGCAGCATTCTACCAGTAATTAGCTAGACCCATAGGGCTcttgtatagggaatagggctctggtctatagtagtgtactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctcaggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagagctctggtctatagtagtaccactatatagggaatagagctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatcgggaatagggctctggtctatagtagtacactatataggcaatagggctctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatagggaataggactctggtctatagtagtaccactatatagggaatagggctctggtctatagtagtaccactatatcgggaataggaAGCCACCTGTGACAGAGCCGCAGTGTGAAGGCAGGGGGAGACCAGATGGTGCAGGGTATGGTCCATTGTTGGATCAGTAGAACACACTAACAGAACGTGTGTTGTGATAATATGGAACATCCACTTTCAATGTTTGGaccttttttgttttttaaaaacagGCTTCGAGGTGTTGTTCTGCTGTCGGGCCATGATGCTCTTATCATCGGATTGGGTCCATAAACTGCAAATGAACAGAACATGAAATCTCAGACCTAACCTGTTGTTATTTTAATGTATCCAAGCTATTTAATAAAGTATTTAATTATGCGGATGGTTTTAATAGTGGCGCTTTTCTTTACGATGTAGTGTTTACCAGAGTCGAGGGATTCTGAAGTCTAAAACCACGAATCTCTCTCTTGCAGGCCCACAAAGCTTGGATTGAGAAGACGTTTCAGAAAAGAGAGTGTATCCAAATATTTCCCAGCAAAGAACCAAACAGGTGCAGTTGTGGTCAGGTAGTGAACCAGCATGTGGCCATCATTCCGGGGGCGACCACTAGGGCGGCGGAAGAGGCAGGTCAGATCGGTCAGGGGGCGGTGCCCATGGAACGCTGGTCCGTGCTTAAACACACACAGGCCACGCCCACAGACACATACGGCATCATGGAGTTCCAGGGAGGAGGACATGTCAACAAGGCCATGtACATCCGTGTGGCGTACGATTCCAAGCCAGACAACATGCTCCACCTGATGGTGAAAGACTGGCAGCTGGAGCTCCCCACCCTGCTCATCTCCGTCCACGGGGGACTGCAGAACTTCGACCTGCAGCCCAAACTAAAACAGGTGTTTGGAAAGGGTCTGATCCAGGCTGCGGTCACCACCGGAGCCTGGATACTCACTGGCGGAGTCAGCACTGGGGTGATCCGGCATGTAGGAGATGCGTTGAAGGACCACTCCTCAAAGTCCAGGGGGAAAGTATGTGCCATCGGGATCGCTCCATGGGGCATCGTGGAGAACAAGGAGGATCTGATAGGAAGAGACGTGACACGTCCGTACCAGGCCATGTCCAACCCCATGTCCAAGCTGTCTGTCCTCAACAACAGCCACTCCCACTTCATCCTAGCAGATAACGGGACCCAGGGAAAGTACGGCGCAGAGGTCCGTCTTCGCCGTCAGCTGGAGAAACACATCTCCCTGCAGAAGATCAACACACGTAAGTCTGACAGATTGGTGGGGGGGTTGTCTGTGTGACACCAGGCAGTGTAAGCCCGTTGAGCTAAAGCCCAGGGCATTAGCAGAGGGAGCTAACTAACaacaagtcttcaggtctcagacGAGAACAACTTCATATTTACCATGAACCATCTGATGTTAATGCTAATGTTGGAACTATACACAGTGTTAGTGTCTTAGATACAATGTACCCTCGTGTTGTCATAGTCCAGGCTTCTTTAGGTGTGTTGATCAGAGAGAGCCTGTCCTGCACTGCTGTACTCCGGTGAGCAGCTGATCTATGTGACCTGTGGGTTTCCCTTTGTCATCCTATGCCTGGAGATCATGATAAGGCAGGGACAACAAAGGGATGCTCAGCTGTCACCTCTGACTTCAACTACCCTGACATTAATACTGTGTCTGAGGTCTAtgaggaccacatactgactacaggcagcaccgctgaggaccacatgctgactacaggcagcaccgctgaggaccacatactgactacaggcagcaccgctgaggaccacatgctgactacaggcagcaccgctgaggaccacatactgactacaggcagcaccgctgaggaccacatactgactacaggcaaaaccgctgaggaccacatactgactacaggcagcatcgctgaggaccacatgctgactacaggcagcaccgctgtgtctgaggaccacatactgactacaggcagcaccgctgtgtctgaggaccacatactgactacaggcaCCACCGCTGTGTCTAaggaccacatactgactacaggcagcaccgctgtgtctaaggaccacatactgactacaggcagcatcgctgaggaccacatactgactacaggcagcaccgctgaggaccacatactgactacaggcagcaccgctgtgtctgaggaccacatactgactacaggcagcaccgctgtgtctgaggaccacatactgactacaggcagcaccgctgtgtctgaggaccacatactgactacaggcagcaccgctgtgtctgaggaccacatgctgactacaggcagcaccgctgaggaccacatactgactaca

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963698.1 False 1937 mRNA 0.48 8 9090166 9108249
TU2282921 True 5861 TUCP 0.44 10 9093080 9108159

Neighbor

gene id symbol gene type direction distance location
LOC118944560 LOC106587999 coding downstream 16824 9043417 ~ 9073342 (-)
LOC110500985 LOC106595573 coding downstream 53780 9025778 ~ 9036386 (-)
LOC110499813 LOC106609698 coding downstream 130451 8907931 ~ 8959715 (-)
LOC118936605 LOC106609696 coding downstream 220116 8826207 ~ 8870050 (-)
LOC118944550 NA coding downstream 306560 8781659 ~ 8783606 (-)
otud7a LOC106591491 coding upstream 150727 9258976 ~ 9384991 (-)
gtf2a2 gtf2a2 coding upstream 283712 9391961 ~ 9394414 (-)
LOC110506256 LOC106561895 coding upstream 1012801 10121050 ~ 10126999 (-)
fhl5 LOC106561894 coding upstream 1058860 10167109 ~ 10184060 (-)
fut9a LOC106561893 coding upstream 1105285 10213534 ~ 10225704 (-)
G1994620 NA non-coding downstream 67662 9021948 ~ 9022504 (-)
G1994619 NA non-coding downstream 68578 9016118 ~ 9021588 (-)
G1994618 NA non-coding downstream 74074 9014648 ~ 9016092 (-)
G1994616 NA non-coding downstream 78165 9011498 ~ 9012001 (-)
G1994617 NA non-coding downstream 79509 9008495 ~ 9010657 (-)
G1994659 NA non-coding upstream 36300 9144549 ~ 9144871 (-)
G1994660 NA non-coding upstream 39670 9147919 ~ 9148151 (-)
G1994661 NA non-coding upstream 39985 9148234 ~ 9148493 (-)
G1994664 NA non-coding upstream 46258 9154507 ~ 9154712 (-)
G1994665 NA non-coding upstream 47695 9155944 ~ 9156345 (-)
LOC110527031 LOC106587988 other downstream 341422 8564300 ~ 8805872 (-)
LOC118944463 LOC106562776 other downstream 984184 8096974 ~ 8105982 (-)
LOC110515105 LOC106593850 other downstream 1217150 7863456 ~ 7873075 (-)
LOC118944558 LOC106595801 other downstream 1284312 7802643 ~ 7809933 (-)
LOC110526845 LOC106592787 other downstream 1338789 7744309 ~ 7751407 (-)
G1994674 NA other upstream 68789 9177038 ~ 9180705 (-)
G1994786 NA other upstream 339344 9447593 ~ 9448494 (-)
G1994812 NA other upstream 392467 9500716 ~ 9501653 (-)
G1996632 NA other upstream 1813767 10922016 ~ 10924533 (-)
G1996949 NA other upstream 2309850 11418099 ~ 11418335 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034801 dre-mir-204-2 non-coding NC_007118.7 CM002891.2 29336996 ~ 29337119 (-)