Gene
RNA
| Item | Value |
|---|---|
| gene id | gtf2a2 |
| gene name | gtf2a2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 9391961 ~ 9394414 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| gtf2a2 | Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human GTF2A2 (general transcription factor IIA subunit 2). |
| description |
|---|
| transcription initiation factor IIA subunit 2 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006367 | transcription initiation from RNA polymerase II promoter | biological_process |
| GO:0006413 | translational initiation | biological_process |
| GO:0005672 | transcription factor TFIIA complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03123 | TFIIA2, GTF2A2, TOA2; transcription initiation factor TFIIA small subunit |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001124366.1 | True | 754 | mRNA | 0.42 | 4 | 9391961 | 9394414 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| otud7a | LOC106591491 | coding | downstream | 6970 | 9258976 ~ 9384991 (-) |
| LOC110516734 | LOC107593117 | coding | downstream | 283712 | 9090166 ~ 9108249 (-) |
| LOC118944560 | LOC106587999 | coding | downstream | 318619 | 9043417 ~ 9073342 (-) |
| LOC110500985 | LOC106595573 | coding | downstream | 355575 | 9025778 ~ 9036386 (-) |
| LOC110499813 | LOC106609698 | coding | downstream | 432246 | 8907931 ~ 8959715 (-) |
| LOC110506256 | LOC106561895 | coding | upstream | 726636 | 10121050 ~ 10126999 (-) |
| fhl5 | LOC106561894 | coding | upstream | 772695 | 10167109 ~ 10184060 (-) |
| fut9a | LOC106561893 | coding | upstream | 819120 | 10213534 ~ 10225704 (-) |
| manea | LOC106561892 | coding | upstream | 833930 | 10228344 ~ 10238666 (-) |
| syt14a | syt14 | coding | upstream | 912883 | 10307297 ~ 10440791 (-) |
| G1994750 | NA | non-coding | downstream | 6121 | 9385475 ~ 9385840 (-) |
| G1994733 | NA | non-coding | downstream | 57623 | 9333198 ~ 9334338 (-) |
| G1994721 | NA | non-coding | downstream | 101657 | 9289895 ~ 9290304 (-) |
| G1994715 | NA | non-coding | downstream | 106672 | 9284734 ~ 9285289 (-) |
| G1994792 | NA | non-coding | upstream | 68503 | 9462917 ~ 9463612 (-) |
| G1994799 | NA | non-coding | upstream | 77654 | 9472068 ~ 9472383 (-) |
| G1994800 | NA | non-coding | upstream | 78675 | 9473089 ~ 9473369 (-) |
| G1994801 | NA | non-coding | upstream | 79205 | 9473619 ~ 9474052 (-) |
| G1994802 | NA | non-coding | upstream | 82182 | 9476596 ~ 9476816 (-) |
| G1994674 | NA | other | downstream | 211256 | 9177038 ~ 9180705 (-) |
| LOC110527031 | LOC106587988 | other | downstream | 643217 | 8564300 ~ 8805872 (-) |
| LOC118944463 | LOC106562776 | other | downstream | 1285979 | 8096974 ~ 8105982 (-) |
| LOC110515105 | LOC106593850 | other | downstream | 1518945 | 7863456 ~ 7873075 (-) |
| G1994786 | NA | other | upstream | 53179 | 9447593 ~ 9448494 (-) |
| G1994812 | NA | other | upstream | 106302 | 9500716 ~ 9501653 (-) |
| G1996632 | NA | other | upstream | 1527602 | 10922016 ~ 10924533 (-) |
| G1996949 | NA | other | upstream | 2023685 | 11418099 ~ 11418335 (-) |
| G1999856 | NA | other | upstream | 3942921 | 13337335 ~ 13338151 (-) |
