LOC110526863 (LOC106562818)


Basic Information

Item Value
gene id LOC110526863
gene name LOC106562818
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9540286 ~ 9543273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608052.2
ATATGACAGAGTAAACAAACTGTTGGTCACCAGTTAGATGACTATAGATCACAGGTTGGTACACAAATTGTCGATTCGATATCAGTTCAAATCACACTGTCCCCCTATAAAACAGCTGAAACTAAAATGTAATCAATGACACGTCATTCAAcacgaaaaaaaaaaaacttacaaCGGACTATACAGAACAAATAGAGAGACTGCGCCAAGAAGCGACGGCCCTCCATGCCAAACATCAAATTGCTTAGTAGCTCTATTTGTAAACGCAAATAGTTGACTAAGCACCCCTTGCTCGGTGCACAAAAGGTTATCTGCATACCTTCACACGGCGTAAACCGGGCTTTCATCACCCTCCCTCACACTTCAAATCCGGTGGGTCGCTGTGCCTTTTCACCCCTTCGCTCTGTCTTCAAATGGAAATCATTTCTATTGGCTCAAGGTGTCCATGTAAATAGGTGTAAATGAATCCAGATTATGCCTTTGCTTTCTCCTCCGAGCGAGtagccccccctcctcctctccacccaagGCGATTGTCATGTGATAGCGAAGAAGTGGCACATTAATGAAGCGGCTCTACGGGGGTCTTTTCTCCTGTCATCACATTAAACTATCACACGGTTCGGGGAAGGACATGGAAATAGCAGCTACTTAGCTCTGCTCATCACAACAAGGGCCACAACATATCGGGAACCATTCAGAGagtcgtggtgtgtgtgtgtgtgtgggggggaaagAGAAGCTTATTGCTGCTTGCTTAACTAAAGATAGCGCATCATATAGGCCATCTGAAGGGAGAGAACGAGACTGTTTTCATAGGACGGCTGTTTTCAAGACCCACAGCCCATAAGCGCTGAGTGAACAGTCCACGGAGGAAACAGACAGTGAGTTGCGTTGCTGTATTTCATGCATCTTGGGGAACTTTCAGTAACTTTTAAGCGCGGGgatattgcattttttttttttttttgtactttgCGTTATAAAGACAATCTATGAGGCGATTGCATGGAGTTTTACGCTTTCGTAATGTTGTTTTGAACAGTTGTTTTGAACAACCCGTCCCAGAGTGATACTTCTTTCAAGGAGTGTAGGACAAAGTTCTATTTTTCCTGTTTGTCCGAGAAAAACTAGAAGAACTGTAGTCTGACGCGCCATTCAGCATTGTATTTAGACAGAAAGTCCAACAGAATGCCTCGTCCGGGGAGAAACACGTATAGCGACCAGAAACCTCCCTATTCCTACATCTCCCTGACCGCCATGGCTATCCAGTCCTGCCCGGAGAAGATGCTCCCGCTCAGCGAGATCTACAAGTTCATCATGGACAGGTTCCCTTACTACCGAGAGAACACTCAGCGGTGGCAGAACTCCTTACGACACAACCTCTCTTTCAACGACTGTTTTATTAAAATCCCCAGGCGGCCGGACCAGCCGGGTAAAGGGAGTTTCTGGGCTCTCCATCCCAGCTGCGGGGACATGTTCGAGAACGGAAGTTTCTTGCGGCGTCGTAAACGCTTCAAGTTGATGATGATGGCGTCCGAGCACCTGGCGCAAAGCAAGCCGTCGGACGCTGCCCACTATCTCCAACAACAAGCCAAACTCCGACTGAGCGCTCTGGCTGCTTCCGGCACACATCTCCCGCAAATGTCCGGTTACAACATAGGAGTCTCTCACCAACCGTCAACTTTCAAACACCCGTTCGCAATCGAGAACATAATCGCCAGAGAGTATAAAATGCCAGGCGGGCTGGCCTTCTCCACCATGCAGTCTATGTCTGCTGGCTACCCGCTGCACAACCAGCTCACCACGGCCTGGCCTCATATGTACAGCTCCAGCGTCATGGACACGGTAGCTCCCATCTCCATGGCCAGTGATTATTCGGCCTACGGAATGCCCCTCAAGTCTATTTGCTATGGCGCGCAGAGTCTACCTGCCATCCCCGTGCCAATCAAGCCCACCCCTACTTCGATGCCAGGGCTCTCGGCTCTGCCAACACATATTCCAGCTTTCTTAGCGAACTCTCCCCAGTCTCTCAGCCCCACGTCTCCTCAGACAGCTACCAGCCAAAGCAGCCCTGCCACGCCGAGCGAAACGCTCATAAACCCGGCCTCTTCGGCCATGCAGTCCGTGGTGTCGGTGCACTGACATGACGTTAGCGGATGGGACTTATTAAAAACTTCTGAATAAGAAAAGAGATGCTTATCAACTTTTTCCAAAGCGGTATTTTATTGTTTGATCAATTCATGACAACCAACTAAAATATGCTCTACAATCATGAGGCAAGATATTTGCGTTTTGTGGTTTATCGATGTACTTAGATGTTTTACTTGAGAATTGTTGTGGCAGTGACCCTTGTCTTTCTATGACGCGCATATAGGCTACATCGTTTTGTTACCTGTTTAGGGTCATTTAAGAATAATCCAATTCTGAGATTATTTTCAAAAAGCACTGTCGTTATCCGTATCTATATTCTTGCTTACATTTTATTGCCAAGTCTCCAATACATATTCCAACAAACTGGTAAAACAATTCGTTATTACATTAGAGAATGTTGTCAGAatattctttttttgttgttgcattttcgTCAAGATAAAAAGgccaagaaaaataaataaatgaaatcaaCTTTTTTGTAGATTAAATTTAACGTGACTTTTTAGTTACAGCTCCCTTTAATGCGCATTGCATTTGCTATACCAAACAGCCAAATCTAGTTTTTAggagaattaaaaaaaaaaaaaagaaagagaaagagaacaatcACAGAGGTGACATTTTCAAATAACAAAACTtgaaaacatatatatttatgGTTTACTTTGGTGTCTGGTTGTCTGCATTCAAAACATTCAAATATATTCGAATTGATGGAAGAATAAGTTGAAATGTGTAAACTGCACTTTTTTTGGGGGTTAAATGTTTTAGATTTTGTGTAGTTTACAGATCTATCTGTAGTTGTTCTGTggaccattttaatttaaaaca

Function

NR:

description
PREDICTED: forkhead box protein B1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09395 FOXB; forkhead box protein B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608052.2 True 2988 mRNA 0.44 1 9540286 9543273

Neighbor

gene id symbol gene type direction distance location
klf13 LOC105021104 coding upstream 306283 9173028 ~ 9234003 (+)
LOC118936595 LOC106609700 coding upstream 524799 8982115 ~ 9015487 (+)
LOC118944396 idh3a coding upstream 558663 8964942 ~ 8981623 (+)
LOC118944518 LOC106609706 coding upstream 647126 8880465 ~ 8893160 (+)
LOC118944519 NA coding upstream 705455 8832283 ~ 8834831 (+)
si:ch211-266g18.10 LOC106561896 coding downstream 164181 9707454 ~ 9812098 (+)
LOC110506241 LOC106561900 coding downstream 302654 9845927 ~ 9918295 (+)
LOC110506240 NA coding downstream 401536 9944809 ~ 9965961 (+)
gnmt gnmt coding downstream 725678 10268951 ~ 10282107 (+)
daam2 daam2 coding downstream 1471726 11014999 ~ 11241714 (+)
G1994827 NA non-coding upstream 14917 9524967 ~ 9525369 (+)
G1994815 NA non-coding upstream 31712 9505775 ~ 9508574 (+)
G1994816 NA non-coding upstream 33838 9505835 ~ 9506448 (+)
G1994810 NA non-coding upstream 40268 9499793 ~ 9500018 (+)
G1994805 NA non-coding upstream 55261 9484800 ~ 9485025 (+)
G1994848 NA non-coding downstream 14837 9558110 ~ 9559723 (+)
G1994851 NA non-coding downstream 17450 9560723 ~ 9566154 (+)
G1994894 NA non-coding downstream 55362 9598635 ~ 9602550 (+)
G1994896 NA non-coding downstream 59528 9602801 ~ 9603033 (+)
G1994906 NA non-coding downstream 71627 9614900 ~ 9616129 (+)
G1994757 LOC106613263 other upstream 149353 9390568 ~ 9390933 (+)
G1993783 NA other upstream 842163 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 872019 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 988919 8537913 ~ 8553492 (+)
G1993593 LOC106587964 other upstream 1391787 8143752 ~ 8148919 (+)
G1998628 NA other downstream 3678764 13222037 ~ 13222681 (+)
G2002614 NA other downstream 6146495 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 6251859 15734525 ~ 15800073 (+)
G2002823 NA other downstream 6528714 16071987 ~ 16074044 (+)

Expression


Co-expression Network