LOC110506241 (LOC106561900)


Basic Information

Item Value
gene id LOC110506241
gene name LOC106561900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 9845927 ~ 9918295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110506241
GTGGCATTCATGTCCATCAATCCATTTATGTAGATACTGTCAGTAAACAAACTACTGCTATGAATAGTGTCTGCCTTGATCTCTCCATTTGGCTCTTTCCCgctctatttttctctccctgATATAAGTGGCTCAGCGTCGGCAGTGACAGTGTGCAAGCTGATGTCAGATCAGCCTCTAATTGGCCAACTCAATCCCCCATCCCCCCTATTTTCtccttcctccattcctctctctacctcatctctcATCTTgttccatttcctctctctctcaatctttgtCTCCCTTTGTGTGTCTCTGCTTATATCTTCCGTTGCCTTTCGCTCTCTCTGGACTGACTGACGTGAGTATCGTCCAATCCCTGCAGGGCTGTGTGAGGCGGGGCCACAATAGTGTGGTGGGGAAGGCAGAGCTGGGTGCTGTCGGCCAGCTCCAGGCCGAGATGCTCCATTTGGATCTGATTGACGGGGCCGATGGTTACCGTGACGACAAGGAGTCATCCAAGGAGCTATCTTCCACAGCACCCTTGCCAATAACCGAGGACCCGGCTCTAGTAACCATGGATATATACCGCCCTAAGAGACCCACAACCCTTAACCTTTTCCCCATGGTGCCACACACTCAGGACACATTAAACAACAACTCATTTGGTAAGAAGTACAGCTGGCAGGAGAAGGTCTCGCGCACATCCTCCCCCCTCAAAACAGGTGGGCTGACCTCTCCCCATGAGCACAGCTGTCTGAGAGACGAGGACAAGCTGCAGCAGGGAGGTGGGACAGAGACCAAGGACCGGGGCACATCCACTGACGCTCcctgcaaacacaaacacacctttgGACACACCCACAGTTCCACAGCGGGGACACGCTCCAAACTGCAGGAGAAGCCCCCAGCAACCCCGCCTCCCCAAAACTACACACCCGCACCTCTGGGCCCCTTAGGAAATGGCGAGGGgggtacacacagagagaagattCGCTATCACACAGACGTATGCCTAGAACCCACCGAGGAGATCTATCTGACTCCTGTGCACCGTTCCAAGCAGGACCGCCCATTCCTGTCCCAGCAGCCAAAGCACGGACGCATGTCAATCAGCTCTGACACAGAGGGCCCGCCCCCTTACCAGCCTCTGCCCGAGCAGACCAACCTCTGCATTTGTGAGGAGGTCGAGGTGTATGTGCCCCCTCCCTCCTACGCCTCCTGTGTGGAggctctcctcacccctccctctactGTCCCCCCACGGAACCCCCAGCCTTAACCCTGAACCTCAGCCTGAGGGAAGGAGGAGCAGGGGCGATGGTGAGGGCAGGGGAATGGGTGGAGTATGTAGATGCCGAGGATGAGACAtttgggggagagggggaggctgAGGATAAGAGGGTAAGGAATGTGGTAGGCAGGCGGTATTTGGGACGTGGCGGCTGTGGTGCCCCCCCATGGAATTTAATGAGCTCAGAAGCAAATGGTCTGTCTTACGACTCTGTGAAGTACACACTCGTCGTGGACGAGCACGCGCAGCTCGAACTGGTGAGTATGCGGCAGTGTTACCAATGTTACAGCGACGACAGCGACTCTGCGACCGTCTACAACAACTGCATCTCGTCTCCGTATGAGTCGGCCATAGTGGAGGAgtatgaggaggaagaggaagaggaagaagagaaagaggacgagaaggagagagtgagagtgggaaTGGTGAGGAGAGAAGCCACCGCCTGTCTGTCAGAGGACTACACCCCAGAGGCGAACCTGCACTTCTCTAAGAGGTTCCTCAACATCTTCATGAACGGATGGTCACGATCCTCCAGTGCAAAGTCATTTGGCTTGTTCTCCTGCTTCAttaatggggaggagagggaacagagtCACAGAGCCGTCTACAGGTTCGTCCCTCGCCATGATGACGAGCTGGAGTTGGAGGTGGATGACCCTCTACTGGTGGAGGTACAAGCAGAGGATTACTGGTACGAAGGCTACAACATGCGTACAGGCACCCGCGGCATCTTCCCTGCTTACTACGCCATAGAGGTCGCCAAGAAGCCAGAGAGCATCAAAGtgaAGAGCAGTGAATGGATAGACAGATACCACATGAAATTCCTGGGCTCGGTCCAAGTGCCCTACCACAAAGGCAATGATGTTCTGTGTGCAGCTATGCAGAAGAGTAACCAGTGCAGCCACTTCTTCCAGTTGAAGAATGTTTCCTTCTGTGGCTATCACCCTAAGAACAGCAAGTACTTTGGCTTCATCACAAAACACCCAGCTGACCAGAGATTTGCCTGTCATGTGTTTGTGTCTGAAGATTCTACTAAACCCCTGGCAGAGTCTGTTGGGAAAGCCTTCCAGTTGTACTATAAGGAATTTGTAGATTACTCCTGTCCAACAGTGGATATTTACCTGGAATAGCACCCGCCCCAACTTCCCCCACAACCCTGTACATTACAGATTATCATAACATAAAGTTGCATGACGGAGAAAACATTTCTAACAAATATTAACTAATATATCTGACAA

Function

NR:

description
LOW QUALITY PROTEIN: C-Jun-amino-terminal kinase-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110506241 True 2523 mRNA 0.53 9 9845927 9918295

Neighbor

gene id symbol gene type direction distance location
si:ch211-266g18.10 LOC106561896 coding upstream 33829 9707454 ~ 9812098 (+)
LOC110526863 LOC106562818 coding upstream 302654 9540286 ~ 9543273 (+)
klf13 LOC105021104 coding upstream 611924 9173028 ~ 9234003 (+)
LOC118936595 LOC106609700 coding upstream 830440 8982115 ~ 9015487 (+)
LOC118944396 idh3a coding upstream 864304 8964942 ~ 8981623 (+)
LOC110506240 NA coding downstream 26514 9944809 ~ 9965961 (+)
gnmt gnmt coding downstream 350656 10268951 ~ 10282107 (+)
daam2 daam2 coding downstream 1096704 11014999 ~ 11241714 (+)
spdya spdya coding downstream 2919993 12838288 ~ 12845477 (+)
wdr43 LOC106561875 coding downstream 2944694 12862989 ~ 12899263 (+)
G1994971 NA non-coding upstream 147484 9698120 ~ 9698443 (+)
G1994969 NA non-coding upstream 149923 9695799 ~ 9696004 (+)
G1994959 NA non-coding upstream 155468 9675977 ~ 9690459 (+)
G1994966 NA non-coding upstream 162375 9681586 ~ 9683552 (+)
G1994953 NA non-coding upstream 170187 9668660 ~ 9675740 (+)
G1995028 NA non-coding downstream 19872 9938167 ~ 9972022 (+)
G1995089 NA non-coding downstream 65952 9984247 ~ 9984523 (+)
G1995091 NA non-coding downstream 69807 9988102 ~ 9988795 (+)
G1995093 NA non-coding downstream 71787 9990082 ~ 9990647 (+)
G1995027 NA non-coding downstream 84367 10002662 ~ 10004515 (+)
G1994851 NA other upstream 279773 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 454994 9390568 ~ 9390933 (+)
G1993783 NA other upstream 1147804 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 1177660 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 1294560 8537913 ~ 8553492 (+)
G1998628 NA other downstream 3303742 13222037 ~ 13222681 (+)
G2002614 NA other downstream 5771473 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 5876837 15734525 ~ 15800073 (+)
G2002823 NA other downstream 6153692 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 6694190 16609650 ~ 16614319 (+)

Expression


Co-expression Network