gnmt (gnmt)


Basic Information

Item Value
gene id gnmt
gene name gnmt
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 10268951 ~ 10282107 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585680.2
GTCCAATCAGAAAGAAGGCGTGAGTATACAGGCGTCTCATTGGGCCAAAGTTTCGCTTCCAGTTTATCTCTAGCTagtataaataataataacaccgTTAAGATTTAGGTGGAGAAAGGCTAGAGGAAAAATACGGATATCTAATATATAATACGTGCCTCACTATTTTCATAAATATTCCATTAGTCTAGAATTTGATATTTCTGCACAAAGTAGCAGTGTGATCCCTGAAGATAAAGAATGTCAGTCGACAGTGTGTTTCGGACGCGTTCTCTCGGCGTTGCTTCCGTGGGGCTTCCTGATCAATATGCCGACGGAAAAGCAGCAAAGGTGTGGCAGCTGTACATCGGAGACACGCGGAGTAGAACGGAAGAATACAAAAGCTGGGTGGTGTCCCTGCTAAAACAGCACGGTGTGCAAAGGATACTGGATGTTGCCTGCGGCACAGGCGTGGACTCCATCATGTTGGTTGAGGAGGGATTTAAGATGACGAGCGTGGACGCCAGCGACAAAATGCTCAAGTACGCGCTGAAGGAAAGGTGGGAGAGAAGAAAAGAGCGTGCCTTTGACCAGTGGGTGATTGAAGAGGCCAACTGGCTGACTCTTACAGAAGATGTGCAGAAGCCAGGGAATGGGTTTGATGCAGTCATCTGCCTGGGAAACTCCTTCGCTCACTTGCCAGACTTCAAAGGGGACCAGAGTGATCAGAAGTTAGCCCTGCAGAATATCGCCAGCATGGTGAGACCAGGGGGCATCCTAATCATTGACCACCGTAACTACGACTATATTCTGGAGACAGGCCGAGCGCCCCAGGGCAAGAACATCTACTACAAGAGTGATCTTACTCAGGACATCACCACCTCTGTGCTGTGGGTCGACAACAAGCCTCACATGATCACCCTGGACTACACTGTACAGGTGCCAGAGGGCCCACAGAGTTCCCCCGAACTTAGCAAATTCCGCCTGTCCTATTACCCTCACCGTATTGACAACTTCAAAGAGATCCTGACGGGAGCCTTCCACGGGAAGTGTGAGCACAGTGTCTACGGCGACTTCAAGACCTACACCCCCGGCCAGAGCCAGGCCCCCTGCTACTTCATCCACGTGGTCAAAAAGACCGCTTAGGGACCCCACAACTTTCCCACGATTTTGTATCTCAACCCTCATTATTTCTCCCTACACTTTCTGTCATGTCTCTTCTGCTGACCCTTCTGTTCAAACTGCCTCTTCTCCCTTTCTGAACCAAAACAAGCCTGAGCCCAAATGCCCATATTCATGCTGTTCGATCCCTTGGTCTTTCAGGGGCTTTTAACTCTCAGGCAACGCAAGAGACGAGACACTCAACAGCCATCTTGAGTGATGTGGAAGCATCTACCAACCATGCTTTGGTagtattttgtcagccggtgattgtcgagcaaataactgccggtctcatcGTAATTTAcaattaattaacataaacacgtttagcatctcctggcttccacacatagcctacaagccactgatgcagaccttttggaacatctacatttaatcacaactctaataaatacatttaatatagcctacaccatcacaataaatccattatttattttagaccagtctaaagaaaatgtatttttcagaagaacagaatagcatactctgagttgtccttgttAGActctgatctggctatgccaaatggctgtgggctacactagttcatttagcagataaGTTtcttagaattctgtggcattattttatagtgtgAAGAATACATTTGAACGtggctgaataaaatagaaagtatATTTTCTCTAAACCGTTACCGAGAGAGTGCACAcgcagctattctgtgttgagcggttaacaaagaaacaggtcctcctaaATGCTTAATTTAGTTAGTTATGCAACTTTATTTGTGATATGTTTGTTTAGATTTTAGGCTGCATGAAGAGACTAATGAATTCTTTAAAGTCTCATGAAATCAaagagctctgctttgtttcttatgcaggctgcacacacttcatcagtctcttattcacaatttgacaagcacttgataatattctcaccagGCCTCGAATTTCCTAACGGCATCCCCATTTTGTGGCCGTAATGCCATTTAAAACAAATCATGCCAATGTGGCCGTTGTGTCCTGAATATAATTATAATTCACCTGGCAGTCGTGCTCTGACGCACCTCTTACTCACATGGCTCTCTATCTCAATTATTATTAGCCAATGCCCGTTATGTGATCGGGTCCTTCTCACATGCATCTCAGCCCcgaagtaggctacaagtgaagacgtTAAAAATGTCTATATTTTACTTTTTGTCAGCcgacaagatgagtaggcctaacgaacagcaaaagcactagcctaagTAGATCTCCCATAGGACAAAAGTTGATCTATTCTATTGGTGAACTCGTACTTCTGTGagaaatatttgtttttatttgacctttatttaactaggcaagtcag

Function

symbol description
gnmt Predicted to enable cation binding activity; glycine N-methyltransferase activity; and identical protein binding activity. Predicted to be involved in several processes, including alpha-amino acid metabolic process; protein homotetramerization; and regulation of gluconeogenesis. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Is expressed in spinal cord. Human ortholog(s) of this gene implicated in glycine N-methyltransferase deficiency. Orthologous to human GNMT (glycine N-methyltransferase).

NR:

description
glycine N-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0017174 glycine N-methyltransferase activity molecular_function

KEGG:

id description
K00552 GNMT; glycine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585680.2 True 2493 mRNA 0.44 6 10268951 10282107

Neighbor

gene id symbol gene type direction distance location
LOC110506240 NA coding upstream 302990 9944809 ~ 9965961 (+)
LOC110506241 LOC106561900 coding upstream 350656 9845927 ~ 9918295 (+)
si:ch211-266g18.10 LOC106561896 coding upstream 456853 9707454 ~ 9812098 (+)
LOC110526863 LOC106562818 coding upstream 725678 9540286 ~ 9543273 (+)
klf13 LOC105021104 coding upstream 1034948 9173028 ~ 9234003 (+)
daam2 daam2 coding downstream 732892 11014999 ~ 11241714 (+)
spdya spdya coding downstream 2556181 12838288 ~ 12845477 (+)
wdr43 LOC106561875 coding downstream 2580882 12862989 ~ 12899263 (+)
LOC110515264 LOC106583873 coding downstream 3265824 13547931 ~ 13554393 (+)
LOC110506268 LOC106562017 coding downstream 3286265 13568372 ~ 13718686 (+)
G1995382 NA non-coding upstream 9322 10213572 ~ 10259629 (+)
G1995374 NA non-coding upstream 65199 10203531 ~ 10203752 (+)
G1995369 NA non-coding upstream 72534 10196209 ~ 10196417 (+)
G1995325 NA non-coding upstream 136381 10130616 ~ 10132570 (+)
G1995318 NA non-coding upstream 148504 10117608 ~ 10120447 (+)
G1995418 LOC100380853 non-coding downstream 8900 10291007 ~ 10291396 (+)
G1995420 NA non-coding downstream 13802 10295909 ~ 10296148 (+)
G1995423 NA non-coding downstream 15854 10297961 ~ 10299823 (+)
G1995422 NA non-coding downstream 19079 10301186 ~ 10307136 (+)
G1995425 NA non-coding downstream 27678 10309785 ~ 10310148 (+)
G1994851 NA other upstream 702797 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 878018 9390568 ~ 9390933 (+)
G1993783 NA other upstream 1570828 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 1600684 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 1717584 8537913 ~ 8553492 (+)
G1998628 NA other downstream 2939930 13222037 ~ 13222681 (+)
G2002614 NA other downstream 5407661 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 5513025 15734525 ~ 15800073 (+)
G2002823 NA other downstream 5789880 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 6330378 16609650 ~ 16614319 (+)

Expression


Co-expression Network