LOC110506257 (LOC106561882)


Basic Information

Item Value
gene id LOC110506257
gene name LOC106561882
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 12038132 ~ 12419690 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585690.2
gccCCGTTGGGAGTCCGAGCCAGTATTCAGTAGGCAGGACCTTTTTGCAGCTGCACTGCCTATAATTGGCATTCCTCCACGAGTGGAACCACAGTCGCAAATTCGACCAAAACCACCCCAAAACAAATTAcccccccatccatccctctcgCTCAGGTCGACTCTTTAGTCTATCGCAAACGTCACTCATGTTGCGTGGCGCGGGAGAAGCGAACTTGGAGTTGAATTGACGtccgacagagggagagagataacagagacacagagagaggcagaagatACACGAGCCTGTCTTTGACAACCTGTTCAGTGAGACGTGCGCATCTCAGCTGTGCCGCTTTGGGCCAAGGAGTCCATCACATCGTTCTCAGTCTGCGCACATACTTCCACTGGCAAACAGTAGGCTACTTGGAGACGCGAGGGGAGGAGCGGTGTAGTGTATGGAGAGTGGGACTTTATTTTGATAGCCTATAATTTCCAATAACCTACGCGGGACTGAACTGTTTAAAGAAATAAGAGGCGTAAGAAATAAGGCAGATTCAACGCCGAAAGGGAGAGAATCGGAGTGATTTCGGACTGCATGGGTTTATGAGGACTCCGCTTTGTGGATACAAGGAGCGGCTCGAGCCCCCTAAAGAATCCAAACGAATGGTTCCGTGCGTTAAAAGTTACCCGGTGAATTCTTATCACATTTCTACTCTCTTTTGAGAATTGGTATATATCGAAATTGGAACTAAGGAAATCTACTAACCCGGAATACTTAAGTGGGGatacctacctacatgtacaacgaATTTATGGTAAGACATCTAAGGTGGTCTTGAAACGGAATTATCGCTGAGCCGCGTCGTAGACTTCGTTTCAAGACAGCCCACCCGCTGCTGCGCTGACTACACCTCTGAGTAAGactattTCCAGGTTATGAGGGATCGAAGCTAAAGATGGagcttttctggattttgttatTTTCTATCATCCACCCATACACACGAGGGCAAGGAGTTTACGCCCCTGCCAATGCCCAGATCTCACACGCGGGCCAGGCATGCGTGGTGAAGGAGGACAACATCAGTGAGAGGATCTACACTATCAGAGAGGGAGACCGCCTGGAGCTACAATGTCTGGTCAAAGGACACCCACAACCACAGGTGCGGTGGACAAAGACAGCAGGCAGCGCCTCTGACAAGTTCCAGGAGACGTCCATCTACAACGAGACGCTGCGCATCGAGGGCATCCAGCGGGTGCAGGGCGGCCGCTACTACTGCAAGGCTGACAACGGGGTGGGGGTGGCTGCCATCAAGTCCATCCGGGTAGACGTGCAGTacCTCGACAAACCCGTGCTGACAGTGCACCAGACCATCAGTGATGTGCGCGGAAGCTATTACCAGGAGAAGACGGTGTTCCTGCGCTGTACGGTCAACTCCAACCCCCCAGCCCGCTTCATCTGGAAACGTGGCAACACGCCCATAGAGCAGAGCAAGGATACCGGAGTGGACATCTACGAACCGCTCTACACACAGGGGGAGACCAAGGTGCTGAAGCTGAAGAACCTGAGGCCAAAGGACTTTGCAAACTACACGTGCGAGGTGACTGTTCGCAACGTGTGTGACATCCCTGAGAGCTCTGTCACCTTTCGGCTCACCAATGCTACCActCCCCCTGCTCTACGGCTGTCGGTCAACGAGACCTTGGTGGTGGACCCCGGGAAAGACGTAACCCTGTCGTGTGAGGTGACCGCCGGATTCCCTAAGCCCACTGTCACGTGGTCGCGCTACCCCAACCCATTGCCGAGAAACTCGTTGGTAAGGAATGGGACTCTGACACTGCGCTCGGTCACGCCCGCCGACTCAGGCTTCTACAACTGCACAGCGGTCAACAACGTGGGGAACCCTGCCAAGAGGAACGTCAACCTCCTCGTccgaaGTATGGGCAACCTCACCTTCCAGATCACACCCGACTCCAACAAGGACAGTGAGAGCATCCAGATGGGCCGCGATCTCAAGCTCTCGTGTCATGTGGACGCACAGCCCCAGGACAAGGTCAACTACACATGGTACAAGAACGCGGCACTAGTCTACAACTCGGACAGCTTGATCGTGCTGCGCAGCGACCCGGACATGGCGCCGGGCACAAGTAGCCTGGAGATCGTGGACATGAAGTTCCGTGACCAGGCCACATACAGCTGTGTGGCCAACTTTCCTGGGAGCACTGTGCCCGAGATGAGGGTAGATGTCAACATTACCCAAAGCAGCGTCACTCCCCCTATTCTGACGGTGCCGGCAGGGGGCCAGGTGgtgagtgtgagggagggaggctcTGCCGACCTGGTGTGCCTGGTGGATGGCAAGCCCCGTCCGCCTGTGCTCTGGTCGCGCGCCGACAAGGACCTGCCTATGCCCACGGGTGAGTGGGCGGTGGAGACACGCAACGGGCGCCTCCGGCTGACCAACGTCACCCGTGACCTGATGGGTTCCTATCGCTGCCAAACGGCGCCCTACAATGGCCTCAACATCAAGCCACGCCAGGCGCAGGTGCAGCTCAACGTGCAATACGCTCCAGTCCTGGACCCGGTCTTTCAGGATGTCCGTTCACCCAACTACCAGTTTGTGACGTTGCGCTGCCTCATTCAGAAGTCCAACCCGGCACGAGTGGCCAGTGTCCGCTGGGTCCGAAACGGCGAGCCCCTGTCCTCCCTGACCCCGAACCCGCAGGAGAACCCGCAGCTGAAATTCAAGCTGGACCCCAGCAACAATGGCACATATGAGTGCCGCGTCAGCAACGGCGTGGGCAGCTCCACCTGCACCTTCAACGTCTCGTCCCGTCCATACAACGCAGAGTTTTACTTTGATACGCCCAACCCCATCCGCATTCAGAAGGTCAACAACTACTCCTACAACCTCCAGTGGACCCAGAGAGAGCCGGCAGCTACAGACCGCATCATCGGCTACTGGGTCAACGTCCGCACgATTAAGCAGAATGACAAGATGAACCAGGTGAACATGTTCTCCAAGCAGATCGACAAGAAGGAGCCCGTGAAGGGCGGCCTCATGTCCTACACCCTGACTGACCTGAAGATCCCTGTCTCCTATGAGATCCGCCTGGCCCCCATCACCACCTACAGCACTGGAGACTATGTCAGTCGCACCATCCAGTACTCAGAGCCCTACATTTACCCAAGACCTTCAGACCACGTCTGTGGCTTTGAGGACGAGCGCATCTGTGGTTTCTCCCAGGACCGGGGCGACAAGTTTGATTGGACTAGACAGAACCACCTGACCCAGAACCCCAAACGCTCGTCCAATACCGGCCCAGAGATGGACAGGAGTGGAAACAAAGAAGGTTACTACATGTACATCGAGGCCTCTCGTCCGCGGGTCGCTGGGGACAATGCccgtctcctgtcccctctctacAATGTTACTGCTGCCAGAGGCCCCAAGGGCTCCGGTCGTCTCCCCTACTGTGTCTCATTCTTCTACCACATGAAGGGCAAGCACATTGGTTCCCTGAATGTGTGGCTGAGGGTGAAGAGCATCGCCTCTGTGGGCGATCGGGTCTGGACTCTGGATGGGAACCAGGGTCCTGACTGGATTCAGGCCAACATCAACGTCAACCCCAGCGGACCATTCCAGGTGATGTTTGAGGCTATTCGGGGATCGGGCTATGAAGGGGACATTGCCATCGATGATGTCTCAGTCACCAAAGGGAAATGCAAGCAGGAGAACTCTGTCTCCAACACAGTTCTGATTGGGGGAGCCCCAGGTCTGCGCTCGCTCCCATTGGTCGCCTCACTGACCGTCGCCCTCTGCTCATATCTACTGCTGCTCTACAGATGATGAGCACAACGCACAGCGTCCCCTGTCTGCCGAGACAGGCAACTGCCCAGACttgctctctcttcttctctccctgtgtccctcgctacctctccccactcccctcccttcttcctctcacATTCTCCATCCACCTTTTTAGTTTTCATCTCCAGCCCTGTTTTCGATGACAATCCATGCTTCACTTCTCCCATTACACCTTGGCTATGCTTGTAACTGACTGTCATTtgattgactctctctctctctctctatcattctcctTTTCCACACTCACCCCTTTACAGTCGTATGTGGCTGTtttttctttcaaccaatcacacTATTTTTAACTGAGGCAAAGTCGCAAACTCAATGACCTGACCTTTGACACCCAATATCACTCAATCCAACCCCTCACAGCAGACACACTTCATTCTTCtattcactctcacacactcttccGTCACCCCCTTTACTCTTTCCAACCCCCCCAGCGACCACCCGTATCCCTGACACACCAAAGTGTCGGACACTCTACCAAAGATGATGAAGAACCTGAGGAAAAAAGGGAAAGGatgggtggggggaggggttgaGAATAATAGGATGACAAGGGTAGGGGGGTTCCCCCCTCCTTATTGAACCCTCCCCTTCGCCTCCTTGGGTTGGGCGCCAGGGAGCTGCCGATCACAGCAGACTGAGTGACTGACAGACTAAGGAggctaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggagttcCCACTTGCCTCTCCTCTACCGGTCATAGCCGTAGATGACTTGTGTTGGATCGTACGTGTACATTTCTCTATATATGATATATTACAAAAgtttaaacaaataaaacatttaaaaaaaacactcatGGACATGAGCAACGTTACAGGCTGCAACAAAGCAAATCTACAGAAGCACAAATTTATACAATCTACTCCCTTTTATTTGGGGTTTCCTCCGTGTGTTGTTGCTGTATGTTGTCCCAATCGAACTATTTGTGTTCTTATGGTTTTTTGGGGGGCGGATGTGAAAAAAAGAGAGTGGTAACATTTATGTGGAAGAGATGTCTGGATGTGTTGGTTGGTACCTATGACACCCTTCGCCTATAGCCCACTTGAGCACTCGTGGCAGGGATGGGCCAGTCACCTCCATTATGCCCACCACCCCACTCTCCACCCCAAAAAATGACTTGACAGAGACTACGACTAGCCTCCCCTACTCATTCACCCCAGCCAGCCACATCCCCTATCTTCAAAGTCCAGCCAGTAACAGCATCTCTCGGACTTCCTGCGGTCTACAGACAATGGACCTCCTGCTTCCTGTACAAGGAGAAAGTGGAGGTGGAGCATGATTGAAATCAATTACGCCAACCACGTCGATAAGCATCATTTAAATGAGTCATGGATGTAGTATATTGGGGGCAGGGCGTCAAAATCCAAGAAAATGACCAACAGGGTAAGGAGAGGGGGGGTGCAGATCCGATAGATGGATTCTATTTCACAGGTTTCCGATGATGAATGTCATGTATAGGATTCTAGAGAAATAACTGAATCAACAACATTTTGAAGGCAGCAGGTCCAATTTCCTACAACAACTGTATCAGCCGATCGAGGTTGAATGTCTTCGATGTAACCATAGTTTATTTAAGACGATAACTCATGTAACATTGTTACAGTATGATTGTGTTTCTCTGTGGAGCAATAATCATTCACTATCAGCTCACATAGTTAGCCCGAGCACATCGTGATTGATCAAAGTCTACATCCTGCAAATGCACCTGTTCGCCCAATTAAGGTAGGGATTCCAATGAGCCCCAAGCACATTGTTGCACAAAGGTACAGATTCAATCCGATCGTAAATTCTTGACAACgcagcttttaaaggcaatgttcacGTTCACAGTAAATGCTTCAGATGTCCGTTCAAACAGAAATCACCTTTAAAAGCTGCATTGTCGACCATGCGATCGGATTGGATCTCAGCTAAAGTAATTGGTCACAATCTAAGAACAAAACAACACACTAACCTAACTGATGATGCAGAACACATGTAACTGGCTCGTTCTTCCTCTCAAGATTAGTTTCCAAAAGTCCGCTGAATCGTAAACCGCAACATACTAGGCACTTGTAGATCTGAGAGGGTTGGATAGGTGTAAGCACGATGGTGGGAGCTCCATCTTACCATCTGATACACCAGGTGGAATTGTTGCTATATTGCTTATACCAGTCCAATCCTTTCATATCTACGCAAGTGCATGGGAGTAGAGACTAAGGGTTGATTTGGTATACAGGGGTACTGTTACATCAGTCTTCTCCAAATAAGTGTTGTACTTTTACTGCATGAGGCTTTTTTTTATCGTATCGGTTGCCGATATTACTTATTTCAGCTCTCACCTTCAACTTAAAGTTCTCAACAAGGGAACCTTGTTCATatacatacacagaacatggacATCAAACTGTGTGCCTCTAAGACTTGCTTCCATAATCTTCCTAAATCAAAGCACTTGGTAAAAATCGGGTGTGGACACGCGATTTCAGATGTCAAGTGCattttggctgtctttttgacaTCCCTCAAAGTCACATTGTAATAGCTACTTAGGTCCATACTGCATTGCAAGCTCATGAGAAGCATTGTTTTATTAAATGTATGTCATTGTGATCTGGGAGCCATCTTGTGTGGTCCTAACCTCATGCTTGCTTGTACACTTCGCTCGCTCACTTTAACTGTAACACCCATATGTATGTAACAGCAGCTCATGTCTTAGCGTAGATGCTCTCCAACGGTTGTTGGAGTTTTGGCATCTCAGGTCATGTCTTGAGCCAACATGGTGTCACAGGGGGTAAGGTGTCTTATCTCAGCTCTGTGGTGTTCATGTGCTACTCACAACCAAGAAACTCTGAAATATCCAACTGGGAAACTCGGTAGAAGAGTGCTTGATTCATCACTTGGAAGCTTTGGACATCAGAAGCTCAGAGTTATGACGTGTGGGCAATTTAGGGCTATTTTTTTGTTCCAAGATTCTTTCAGAGTTTACGATAACTCTGGTACCACATGACAGCAGTTACTGTCTTGCCGACTACCCATTTCCCACCTCCTTTATCCAGTAAGCTGTGCATTTCGTAAGCATTTTTGGCAAGCGCTGACCATTTGCTAGCAAATATATTTAATGTATATTTACAACTATCTGTAAGTATAGGCAGGAGATATGCAGGGTGGCAATGCCTGAATTAGGACATAACAATGATGCATCAGAATCAGATGCAACTGAAAGATAATTATCAAAGTACTTTATCACATGATTTTAAATGATAATGTTTCATTAGGAAATTTGAACTCATGTTCTACATGACCCCAAAGAATTCAGAGGCTTGGTGCAATTGATGTTCACTTGTTGTTTTATTTCATTTGTGGTTTCTTCACACATCTAGAGTATTTGGCAATTATGAAGAAGGTAGCGGTTTTAAAAGGAAGATCAATTGTTTTcccttttattttgtatttattttcgttaaaaaatatatatatatatttttttcaaaccAAGACTACAATATCAAGCTAAATCAATTTGAGACCACACACATTCCTGTCCATGGTCACATACTTTACTAGAAAACAAATGAACATCTTCTTTAAATGGAGTTCCACAATAATCATATATGTGTAGCTAAGCACCTGCAGTATGTGTAACATTACAATTAGTCTCAACACACTGAGCGTTTGAAACACAACACGTGTAGATGTAACCGGATCCTACTATACCTGTACCTGCTGCTGTGTTCGGGAGAGCGTGGGAGGGTCCACTTCaaaatatattatacagtacttTAAATACATCGCTGACACTGATTACAATTATTACAGTTGAGTAACCTGCATAGAAATGCCCAGGGCCTAGACTGATCATGTTAAATACCCAATGGAAGAAAGGGTACAGCACAGAAATAGAGAACCATAAACCTTGGATTAAATTTAATGTAATAAGATTTTATCTTTGTGTCTTCTGTGTTCTTTATTATAGAATACTTCTCAACATTAACACTGTTGTAAAGTCAGGTGAATTCCTTGTCAATGAAATATGTGGGTAGGAATACTATGAAATGGGTAAGAATACTATGAAATGTGGGCAAGAACATTATTTTGGGGGAAATAAGCATTAACCAATATTATATTTATTGTTGAGGGGAGAATTGTACAATTATGAATTTTGATCTTATGACATGATGGTTGAAGTGCCTCCATTGATCTGAACCTGACCTTCAGTATTGGTAGTAATATTTGGTTGTTTGAATTCATGGTCTTTCTTTCCAAAACTCCTATATGAATTGAGTTGTACATTTTTAATATTGACAAATGTTACACAGCCTACCCTTAGGTGGTCTTTACTGTCACCAGATCAATTGGAAATTAAACTAACCTGCATACTTCAAATGAAACCAAGAAATGCCTGAAAATGAGGCAATTTTGTGTTGACAAATCAGATATATCCAATAGTTGGCCATTTGAAATCTATTCACTTGTGTCCAGAAAGGAGTATGCAGCTGTTCGGTCTGAGGTATAATTCATTGTGCTGCTTTTCATGCACTTTAATGTGAAATTAAATGTCTTGAAATGTATGCCATTTGACACCCATTGTGTACAAATGCTCATTTTTTTAGTACTTCATGATTGTCACATCACTCCCTCATTAGCTGAGGTTGTCCTAAAATCTACACTGTACTCTATATTATTGCAGTCTGGTTTAAGGTGTAGATTATCAATATATTCCTCTAGTATACAAGACCGAATGGGAGTTCAGTTCACTGGTATAGTCCCTTAGGTTTGCACATTTCTGGAACCTTTCTGACTCCCAGTTCCCTCCCCGCTTATTATCTTCTGATTTCAGGAATTCTACAACCAAGATTTCTGAAAAGATTGTGAATTTGGTAAATAAATGTGGCATTGCCACACCTCCAGTTATCTGATGTTTTTGCATGATCCAGGTTAAAAGGTCGCCAGTTCATGCTGAACATTTTCAAACCTCCACTACAAGTGTATGTACAATCAAAATGTTTTGTTGTAGATTATCAATCTATCATCTTTTGTCCATCATATCCTTGTAGTTATCTGTCTAAAACAAGAACGTTAGAAAGGACTCCCGACATGCAGGTTAGAGATCAAATAAGCAAGTGCCTCACAACTGCTATTCCTCCATGAGGTGACTTTCCATCCATGAAAACCACTTCAGCCAGTTAGCGTAGTGTCCAAGCAATATCTGTGGCAATGTTCAATggccagtcactcagtcactaaaAATGAACCCCTCTTCCATTAGAGACATCCCGGCACACACCATTGATGCTCTACGTATTCAACAGCAGGACCGACTGACTGTTACTGTATAGGTTTTCACATCACTGCCTCACTGCCAGTGCAGACACTTTGTCCACTCACATAAAGGGTGCGTTCCAGATACAGTGATTTTGATCAGGGCTAAGTTTCCCAAAGACATCTTTAGCATTCAATAATCATTGTTTGTCCAATGCCCTACCTATGGATTTAGGATGATCTTAGTGCTAAAGACAATAGCCATGTTATTGGGAAAGTCACCCCAGATCTTTATAATGCCTGATCAACCACATCAACATGATGTAATCATCCTATAATCTACGCAGACCTGTGCAGGATCTGTGTATCTGGAGCGCAACCAAATGACTGAACCCTCCCCAATGCAGTCAGATTGGTCAGAGTAACTTCACAGCTCCTGCCTGGCTGTGCAGACTTGTGCAATGTGTGCGGATCCGAGACaaagacggtgtgtgtgtgtgtatatgcaccTTAGTGAACGCGCGAAGAACGGTGTAGCAGTGCTGGGTGTTGTATATTCTCTGTCATGTACTGAAATATTTTAGAggaaaaatatatttgaaatatgactccaaaatgtatgaataaataatcatgaaagaacaaaaaaa

Function

NR:

description
MAM domain-containing glycosylphosphatidylinositol anchor protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585690.2 True 9841 mRNA 0.47 19 12038132 12419690

Neighbor

gene id symbol gene type direction distance location
LOC118944497 NA coding downstream 712450 11323168 ~ 11325682 (-)
mocs1 LOC100196496 coding downstream 736715 11251835 ~ 11301417 (-)
LOC118944586 NA coding downstream 989560 11048419 ~ 11048572 (-)
kif6 kif6 coding downstream 1051517 10882204 ~ 10986615 (-)
LOC110506078 kif6 coding downstream 1164371 10774046 ~ 10873761 (-)
LOC110506258 LOC106561881 coding upstream 150507 12570197 ~ 12616568 (-)
LOC110506259 LOC106561880 coding upstream 255874 12675564 ~ 12688280 (-)
LOC110506260 LOC106561879 coding upstream 295613 12715303 ~ 12740943 (-)
LOC110506264 LOC106561878 coding upstream 356803 12776493 ~ 12835289 (-)
LOC118944582 NA coding upstream 361702 12781392 ~ 12781526 (-)
G1999008 NA non-coding downstream 45815 11991945 ~ 11992317 (-)
G1997291 NA non-coding downstream 384494 11644263 ~ 11653638 (-)
G1997247 NA non-coding downstream 414376 11623533 ~ 11623756 (-)
G1997241 NA non-coding downstream 417098 11620796 ~ 11621034 (-)
G1997232 NA non-coding downstream 423582 11614303 ~ 11614550 (-)
G1999474 NA non-coding upstream 278574 12698264 ~ 12698519 (-)
G1999475 NA non-coding upstream 279344 12699034 ~ 12699328 (-)
G1999477 NA non-coding upstream 280959 12700649 ~ 12700940 (-)
G1999479 LOC100846954 non-coding upstream 282010 12701700 ~ 12702032 (-)
G1996949 NA other downstream 619797 11418099 ~ 11418335 (-)
G1996632 NA other downstream 1113599 10922016 ~ 10924533 (-)
G1994812 NA other downstream 2536479 9500716 ~ 9501653 (-)
G1994786 NA other downstream 2589638 9447593 ~ 9448494 (-)
G1994674 NA other downstream 2857427 9177038 ~ 9180705 (-)
G1999856 NA other upstream 917645 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 1100996 13520686 ~ 13521520 (-)
G2000052 NA other upstream 1210094 13629784 ~ 13630075 (-)
G2000879 NA other upstream 1858451 14278141 ~ 14278746 (-)
LOC110506276 LOC106587060 other upstream 2213312 14613586 ~ 14678505 (-)

Expression


Co-expression Network