Gene
RNA
| Item | Value |
|---|---|
| gene id | spdya |
| gene name | spdya |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 12838288 ~ 12845477 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| spdya | Predicted to enable protein kinase binding activity. Orthologous to human SPDYA (speedy/RINGO cell cycle regulator family member A). |
| description |
|---|
| speedy protein A |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021585703.2 | False | 2088 | mRNA | 0.49 | 7 | 12838288 | 12845477 |
| TU2286977 | True | 668 | lncRNA | 0.46 | 3 | 12838451 | 12839743 |
12,829,000
12,830,000
12,831,000
12,832,000
12,833,000
12,834,000
12,835,000
12,836,000
12,837,000
12,838,000
12,839,000
12,840,000
12,841,000
12,842,000
12,843,000
12,844,000
12,845,000
12,846,000
12,847,000
NC_048590.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| daam2 | daam2 | coding | upstream | 1596574 | 11014999 ~ 11241714 (+) |
| gnmt | gnmt | coding | upstream | 2556181 | 10268951 ~ 10282107 (+) |
| LOC110506240 | NA | coding | upstream | 2872327 | 9944809 ~ 9965961 (+) |
| LOC110506241 | LOC106561900 | coding | upstream | 2919993 | 9845927 ~ 9918295 (+) |
| si:ch211-266g18.10 | LOC106561896 | coding | upstream | 3026190 | 9707454 ~ 9812098 (+) |
| wdr43 | LOC106561875 | coding | downstream | 17512 | 12862989 ~ 12899263 (+) |
| LOC110515264 | LOC106583873 | coding | downstream | 702454 | 13547931 ~ 13554393 (+) |
| LOC110506268 | LOC106562017 | coding | downstream | 722895 | 13568372 ~ 13718686 (+) |
| LOC118944575 | NA | coding | downstream | 845605 | 13691082 ~ 13691136 (+) |
| LOC110506269 | cssa11h2orf71 | coding | downstream | 969072 | 13814549 ~ 13821198 (+) |
| G1998350 | LOC106561878 | non-coding | upstream | 38089 | 12797425 ~ 12800199 (+) |
| G1998319 | NA | non-coding | upstream | 89290 | 12748790 ~ 12748998 (+) |
| G1998316 | NA | non-coding | upstream | 95370 | 12742511 ~ 12742918 (+) |
| G1998292 | LOC106561879 | non-coding | upstream | 97558 | 12715306 ~ 12740730 (+) |
| G1998299 | NA | non-coding | upstream | 124365 | 12713712 ~ 12713923 (+) |
| G1998506 | NA | non-coding | downstream | 216052 | 13061529 ~ 13061781 (+) |
| G1998515 | NA | non-coding | downstream | 227391 | 13072868 ~ 13073555 (+) |
| G1998517 | NA | non-coding | downstream | 231801 | 13077278 ~ 13077507 (+) |
| G1998533 | NA | non-coding | downstream | 252239 | 13097716 ~ 13098057 (+) |
| G1998536 | NA | non-coding | downstream | 254716 | 13100193 ~ 13100409 (+) |
| G1994851 | NA | other | upstream | 3272134 | 9560723 ~ 9566154 (+) |
| G1994757 | LOC106613263 | other | upstream | 3447355 | 9390568 ~ 9390933 (+) |
| G1993783 | NA | other | upstream | 4140165 | 8697174 ~ 8698123 (+) |
| G1993771 | herc1 | other | upstream | 4170021 | 8666601 ~ 8668267 (+) |
| LOC110512379 | LOC106587994 | other | upstream | 4286921 | 8537913 ~ 8553492 (+) |
| G1998628 | NA | other | downstream | 376560 | 13222037 ~ 13222681 (+) |
| G2002614 | NA | other | downstream | 2844291 | 15689768 ~ 15696280 (+) |
| LOC110506284 | LOC106561914 | other | downstream | 2949655 | 15734525 ~ 15800073 (+) |
| G2002823 | NA | other | downstream | 3226510 | 16071987 ~ 16074044 (+) |
| fshb | LOC100136594 | other | downstream | 3767008 | 16609650 ~ 16614319 (+) |
