spdya (spdya)


Basic Information

Item Value
gene id spdya
gene name spdya
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 12838288 ~ 12845477 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585703.2
GAGGTGAAATTGAAGGAGGCGATTTGGACCTAGGTCTCTACACATCGTAGGCGGGTTTTCTCCCTGTTCAATTGCCCGTCTGTAAACGACATTGCGCGGTTCTGATAAAAATCAGTTCCATTCTTCGACGTGTCTTCAAGCGCGCTCCCGTCAAGCAGTTAGTCGCCTGCACCTGTGTGAGAGGACGAGGAGGCACCTTTCATTTCACCATTGACAGTTTCCCCCTCATTAAATAATTGTTTACTGAAATAACCATACACATACCAATTACCCAGTTGATACACTTTTACTCGAATAACAACTGTTTTCCTTGCCCTGTCACAACAAcatagcagctagctagttactgtaGCATAGGACGATCTGAGGAAACCTTTCAGATTTCTTCAAGTCTTGATTTCCACGTCTGACTCTGACACCACACTACTATTTGTTCTAAGCAAAGGTCAGGAACACTCCCTCAGAAAACATTTCACTAGTGACCATTCATGAACTAATCAGCAGCatgatgaaacacacacacagctggtgccAGACACCCCCCTCAGTCACGGTGAGAATCAAACCCAACACAGCACACACCCTCCAGATCAAGAGAGGCCTGAGGCTGAAGAGACCCAACCTGCAAGTGGCCCAGGGGCCTCCTGGCAAGAGTCAACCCAGCCAAAGTCATGTCGAGGCCGCAAAGGGAAAAATCATATGGGGCCCGACACTTGTCATTCAACGAGAAGAGATGGCAGCCTTCTTCAGACTTTTTGATGATGATTTGATACAAGACTTTCTGTGGATGGACTGCTGTTGCAAAGTCACAGACAAGTACCTTCTAGCCATGGCGTTTGTCTACTTCAAGAGGGCTCGCTTCAGTATTGGCGAGCACAACAGAACAAACTTTTTCATTGCACTATACCTAGCCAACACcatggaggaggacgaggaggagagcAAGTACGAGATCTTCCCATGGGCACTTGGCAAGACCTGGAGGAAGCACTTCCCTCGCTTTCTCAAGCAGCGGGACAAGCTGTGGGCTCGCATCGAGTACCGGGCTGCCGTCAGCCGCCGCTGCTGCGAGGAGGTGATGGCCATCGTGCCTACCCACTTTATCTGGCAGCGGGAGCGCGCCGAGCACCACAGCGGCGCTCAGCGGTTCTACATTGGCGACCGGGAGAAGGTCCACATGCCCCGTGGGCCCTCCGCCTCCCCCGCACCCTGTGCCCTCTGCGCCAAGAGCTCCGGCCTGGGCCTCTCTTCCTCCTCGGCCTCTGGATCCTCAACCTCCCTTACCCCCTCCTCGTCCTCCCCGCTACCCTTTGCCCTGGCCCTCTCCCTGGAGACTACTCCACCCAGGTCCCAGGTTTCATCCTCCCGCAGACCTGGCCAAAGAAAGACCAAGGCCCAGCGCCCCTGCTGCTGCACAGAGGAGGCCCCAAGGAACGAGTCTTATTGTGGAGCAGGACACGACCCGTCTATGGACTGGATCAACGAGGAGTAGAATAGTACTACAAAAACCAACTCAGGACTAcatttcccaaccctggtcctgtgaAGCATATATTTAGTTTTCATAACATCTATAGAATGCCAATTTACTGCTCTACCTCGATTAGGTGGTTTAAATGGAAACTAGCATTCACAGGGGAATAAATCCTATCTTGAGGATTTGTGTAACTCGAGTGTAGTTTTGTCTCATTTATCAAGTTAGGAATTGGTTCAGGGCTTCTTTGATCAGGGTTTAACTTTAGATAAAGGCATATAACATTTCCCTCAACTGTCCTGACACATGTCATGAAATGTAAAACATTCACTTCACATTGTTCTGTGTATACTTTTTATGTACAAGGACTTAAGTCAAACTCTCGGGGCCTCTGTGCTATTATTCCTTAAAGGTGGACACTTAACAGAACTGATTAATCCCTCAAAACACTTATTTATTTGCTATAGCACTTCAAGGTCTTGCACATTGGGTGGGAACTGTTGACTAATTCCTTAAATATAAATCAGCTGGAAGGATCTGTACATCATTTGATCCATGAGTGAAGGCTTGGGTATGTTCTGTGATACTGACAATAAAGGCTTATGTCCCCCTTA
>TU2286977
CGCCTGCACCTGTGTGAGAGGACGAGGAGGCACCTTTCATTTCACCATTGACAGTTTCCCCCTCATTAAATAATTGTTTACTGAAATAACCATACACATACCAATTACCCAGTTGATACACTTTTACTCGAATAACAACTGTTTTCCTTGCCCTGTCACAACAAcatagcagctagctagttactgtaGCATAGGACGATCTGAGGAAACCTTTCAGATTTCTTCAAGTCTTGATTTCCACGTCTGACTCTGACACCACACTACTATTTGTTCTAAGCAAAGctggtgccAGACACCCCCCTCAGTCACGGTGAGAATCAAACCCAACACAGCACACACCCTCCAGATCAAGAGAGGCCTGAGGCTGAAGAGACCCAACCTGCAAGTGGCCCAGGGGCCTCCTGGCAAGAGTCAACCCAGCCAAAGTCATGTCGAGGCCGCAAAGGGAAAAATCATATGGGGCCCGACACTTGTCATTCAACGAGAAGAGATGGCAGCCTTCTTCAGACTTTTTGATGATGATTTGATACAAGACTTTCTGTGGATGGACTGCTGTTGCAAAGTCACAGACAAGGTAAAAAGCATTGCTTTGGAGGTTACCAATTTTATTTGTGTGTAGTGATTAAAGTATACAACTTCGGATGGACATGAGTACTCGAACGGACATC

Function

symbol description
spdya Predicted to enable protein kinase binding activity. Orthologous to human SPDYA (speedy/RINGO cell cycle regulator family member A).

NR:

description
speedy protein A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585703.2 False 2088 mRNA 0.49 7 12838288 12845477
TU2286977 True 668 lncRNA 0.46 3 12838451 12839743

Neighbor

gene id symbol gene type direction distance location
daam2 daam2 coding upstream 1596574 11014999 ~ 11241714 (+)
gnmt gnmt coding upstream 2556181 10268951 ~ 10282107 (+)
LOC110506240 NA coding upstream 2872327 9944809 ~ 9965961 (+)
LOC110506241 LOC106561900 coding upstream 2919993 9845927 ~ 9918295 (+)
si:ch211-266g18.10 LOC106561896 coding upstream 3026190 9707454 ~ 9812098 (+)
wdr43 LOC106561875 coding downstream 17512 12862989 ~ 12899263 (+)
LOC110515264 LOC106583873 coding downstream 702454 13547931 ~ 13554393 (+)
LOC110506268 LOC106562017 coding downstream 722895 13568372 ~ 13718686 (+)
LOC118944575 NA coding downstream 845605 13691082 ~ 13691136 (+)
LOC110506269 cssa11h2orf71 coding downstream 969072 13814549 ~ 13821198 (+)
G1998350 LOC106561878 non-coding upstream 38089 12797425 ~ 12800199 (+)
G1998319 NA non-coding upstream 89290 12748790 ~ 12748998 (+)
G1998316 NA non-coding upstream 95370 12742511 ~ 12742918 (+)
G1998292 LOC106561879 non-coding upstream 97558 12715306 ~ 12740730 (+)
G1998299 NA non-coding upstream 124365 12713712 ~ 12713923 (+)
G1998506 NA non-coding downstream 216052 13061529 ~ 13061781 (+)
G1998515 NA non-coding downstream 227391 13072868 ~ 13073555 (+)
G1998517 NA non-coding downstream 231801 13077278 ~ 13077507 (+)
G1998533 NA non-coding downstream 252239 13097716 ~ 13098057 (+)
G1998536 NA non-coding downstream 254716 13100193 ~ 13100409 (+)
G1994851 NA other upstream 3272134 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 3447355 9390568 ~ 9390933 (+)
G1993783 NA other upstream 4140165 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 4170021 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 4286921 8537913 ~ 8553492 (+)
G1998628 NA other downstream 376560 13222037 ~ 13222681 (+)
G2002614 NA other downstream 2844291 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 2949655 15734525 ~ 15800073 (+)
G2002823 NA other downstream 3226510 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 3767008 16609650 ~ 16614319 (+)

Expression


Co-expression Network