trmt61b (trmt61b)


Basic Information

Item Value
gene id trmt61b
gene name trmt61b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 12845479 ~ 12856664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585702.2
accagtacagagggataggccaacaagtgatatgtttcagtaagattggatttttagcatttatagcaatggttatcaactgtactgcagggatggaacgtAGGTTGTAGAAAATTGAGGTTCTGGCGGCAactgcagagaggtatttggtGTGCGAGACTTTACATCAGAAGTGTTACAGGGTGCGTGAggtggtggtgtcccatcctttcaggttgTTTGTCTGAGGTAGGACTAAATAGATTTAAATAGTGTAGTAGGGTGGTGTTAtttttataaaaacaaaaaaatgttgtgagtgtagtgttagAATAGGTGGtagggtatttatttattttttcaagcaAAGAATAATGGAGTTGTTCTCCATTCTAGTTGTTAGGGGTAATGCAACATATTGGGTGCCAACTGCTTTTAAACCTAATCGAAGAAGAAGAACCCAGCTGCCAGTTTTTCAACCAGTCGTTCAACGAAGCCCAGGTGTCTAATTCCGTATGAAAAGTAAACAGTCTATGTCTTTGATACCTTGAAGTGGCTCTGGCTATTAGTTCAATTATTAAACGAGTTCAACTAGAGACAAATGAATGTCTCAAAGAAATGTATAGGTCTATCTGTGGCAGTATTATAGCTGCCAACTACTGTGCAAAGAGCAACAAATTATGCGTGGATGCCATAGCAATTGTTTCTCTTTTGGATGTCGGCATGACATTACCTTTTTATTTCTCCTTTGCATGGTGGCATGACATTACCTTTTTATTTATCTTTTGCATGGTGGTATGACATTACCTTTTTATTTCTCCTTTGCATGGTGGCATGACATTACCTTTTTATTTCTCTTTTGCATGGTGGCATGGCCTGTTTATTGTAAGTAAACATTAGCAACTGAGTACATCACTTTTTGGAGAGGACATGTGCATTTATCGCCAGGAAATAATTATTTATTCAGCACCATCTAGTGGTAAATAGAAAGTACGGCATCCGTGGTCTGTCGCTTTGCATTGACGTAGAACACATGCGTTTTCCAGCATGGCGACATCCATAGTGTAAAGCAACTGGCAAGGACCGAAACGGCAAGTTAATGACATTTCAAAAAAATAGGTGATCTATGTACAACGTCTTCTGTACGCTATCTGCCATTACCTCCTGAAATGTAAACGCGCGGTCAATTTTGTTCATGATTCTTGATGTAAAtgtatagtatactgtatatttataatTACGCTCGTCTCTGCCTTCTCTCATTTGTGAAGGACCGGACTTTTCAAATGTGGGTTATTATTCTCCATCAAAGTTCGTTGTGAAATCGAGTCACTGTCAGCATCATATGTCACTTGTCAAGTGTCACTTAGTGATTTGAAAAAGCATTAAACACTGAATGCAACATGCTGGTGTCATGAAAACACTGTCTACATGGTACCAATTCAGCACACACAGTTTTACTCCACTTCGCACTGATGTCTGTTGGATTTCAGTTAGGTGGGTCTCTTTTCACACAAAGACTGGTGCGGATATGTGTCACCTGCATTGGCCAGCAGGGATACAGGCAGCTCATTCCCAAAAGTCGACTCCCTACATGTACACTGTACACAAGGAGCTTTGGGACTGATCCTAAGGGGGAGAAAGGGGAAAATGAGAACGGGAGCAAAACAACAGACAACCTTGACCCCTCACCCCAGACTCTAACCCCTATGCACACACAGGGAAGAGGTTTGTTTGGTAAAAGGCGACCACTCTCACCCTTGGAGAGGATTAGCCGCCTTTTGCCTCAGGACTCACTAGCCCCAGAATTGTTGgtgctgagagaggaggagaacccGGAAGTGAAACAGGGGGAACCTGATGGGGTTGGGGTTCAAAAAGACCACAACACTTCAGCAGCCTCGGTGATTGAGACTAAGATCCACAGCTCACAAGGAGAAGTAGAAAGTGCAGAACCACAGGTGCACATAGGACATGACACAGTTAGACCGAGAGAAGAAAAAGAGGAGGGTACTGTCATTGATAACACAGTACTAGAGCCAAATGGTTGCCCGATTCTCAGAGAGGTAACAAATTATTCACAAGAGGAGGGATACGTGACTCCTATGACTCCCACTCTTCTTCCCGGGGAGCATTTACTCACTTTTGGGGAACTGCTGTTGGCGGAGTACCGGAAGAAGGGCCGCGTGGAGTTTAGGAAGATGTTTCAGCTGCAGGATGGGCAACGTCTCCAGAGCAGTTGGGGCACCATCGGACACAGTGACATCGTCGGCCGCCACGCAGGAGACTTCATTCGGACCATCCACGGGACACCCATCCTTATACGGCGGCCCAACCTGGAGGAATACGTGCTTTATATGAAGAGGGGGCCGGCAATCGCCTATCCAAAGgATGCCAGTATGATGCTGATGATGATGGACGTCACAGAGGGAGACTGTGTGTTGGAGTCAGGCTCCGGGTCAGGAGCCATGTCGCTTTTCCTGTCCCGAGCTGTGGGCTCCAAGGGCAGTGTTATGAGTGTGGAAATCAGGGAGGACCACCACAGACGAGCCGTGCTCAACTACAACCGCTGGTGTTCCTCCTGGATCCTGCGGCGAGGAGAGGAATGGCCTGACAACGTCCAGTTTCATAACTCTGACCTGCAGGGGGCCTCCTTGCTCCTCGCCGGGCGAGGGTTTCACTCTattgCTCTGGATATGATAAACCCTCAATTGGTTTTGCCCACTGTGATTCCACATCTCCACCCCGGAGCAGTTTGTGCTGTCTACCTAGCCAATATAACACAGGTCATTGATCTACTGGAGGGCCTCCGATGCTCTGCCCTCCCCCTGCTGTGTGAACGCATCATCGAAGTGCAGCTCAGGGATTGGCTGTTGGCTCCGGCACTCCAGAAAGATGGGCGGTTCTGCCGGAGGAAAGCTCCTCCCTCAGCGAGAAACCAGGAGGAAGGGGAGAATAACAAGTCTGATGAAGAAAAAGAATACACAAGCAGTCCGGAACCCGCACCATATGGGAGTGTCCCTTACATTGCTCGACCTCACCCGGAGCAAGCTAGCCACACAGCATTCCTGGTGAAACTGAGGAAGAGTCAGGGGTAGCTCGCCTCCGAAGACCCATCAGAGGAGCGATTGGGTGTATTATATTCATAAATGTTATTTGGTACTGCAGAGGAAAATGTAGTTGCCCTATAATCAGTCTGGAAATTGAAATTCATACTTCTTGACAACACGCCAAATATAAAGACTCAATAAAACACCAAA

Function

symbol description
trmt61b Predicted to enable methyltransferase activity. Predicted to contribute to tRNA (adenine-N1-)-methyltransferase activity. Predicted to be involved in mitochondrial tRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in mitochondrion. Orthologous to human TRMT61B (tRNA methyltransferase 61B).

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial

GO: NA

KEGG:

id description
K07442 TRM61, GCD14; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585702.2 True 3239 mRNA 0.46 7 12845479 12856664

Neighbor

gene id symbol gene type direction distance location
LOC110506264 LOC106561878 coding downstream 10190 12776493 ~ 12835289 (-)
LOC118944583 NA coding downstream 53434 12791911 ~ 12792045 (-)
LOC118944582 NA coding downstream 63953 12781392 ~ 12781526 (-)
LOC110506260 LOC106561879 coding downstream 104536 12715303 ~ 12740943 (-)
LOC110506259 LOC106561880 coding downstream 157199 12675564 ~ 12688280 (-)
LOC110506271 LOC106561903 coding upstream 1461640 14318304 ~ 14368873 (-)
LOC110506081 prmt3 coding upstream 1520754 14377418 ~ 14496552 (-)
LOC110506276 LOC106587060 coding upstream 1756922 14613586 ~ 14678505 (-)
LOC110506082 LOC106561908 coding upstream 1846444 14703108 ~ 14788733 (-)
LOC110506277 NA coding upstream 2037831 14894495 ~ 14898577 (-)
G1999517 NA non-coding downstream 85751 12755464 ~ 12759728 (-)
G1999505 LOC103376403 non-coding downstream 100229 12745011 ~ 12745250 (-)
G1999502 NA non-coding downstream 103208 12742070 ~ 12742271 (-)
G1999488 NA non-coding downstream 131746 12713439 ~ 12713733 (-)
G1999479 LOC100846954 non-coding downstream 143447 12701700 ~ 12702032 (-)
G1999586 NA non-coding upstream 50738 12907402 ~ 12954741 (-)
G1999611 NA non-coding upstream 82840 12939504 ~ 12939821 (-)
G1999697 NA non-coding upstream 228723 13085387 ~ 13085707 (-)
G1999772 NA non-coding upstream 348029 13204693 ~ 13204918 (-)
G1999784 NA non-coding upstream 368042 13224706 ~ 13225022 (-)
G1996949 NA other downstream 1427144 11418099 ~ 11418335 (-)
G1996632 NA other downstream 1920946 10922016 ~ 10924533 (-)
G1994812 NA other downstream 3343826 9500716 ~ 9501653 (-)
G1994786 NA other downstream 3396985 9447593 ~ 9448494 (-)
G1994674 NA other downstream 3664774 9177038 ~ 9180705 (-)
G1999856 NA other upstream 480671 13337335 ~ 13338151 (-)
G1999980 LOC106561221 other upstream 664022 13520686 ~ 13521520 (-)
G2000052 NA other upstream 773120 13629784 ~ 13630075 (-)
G2000879 NA other upstream 1421477 14278141 ~ 14278746 (-)

Expression


Co-expression Network