wdr43 (LOC106561875)


Basic Information

Item Value
gene id wdr43
gene name LOC106561875
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 12862989 ~ 12899263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585701.2
CTCTGTGGGCAATAAACACGTGGTTCTTGGCAATCCAGGCAGACATTGGTTCAATAATGGCGGCTGATGGAGGTAGTTTTTCTTTGGGGCTACCCTGTGTTTTCTCTCCAAAGTCACGTCAATACCTTGCTTTATGTGCTCAGGATGGCAGACTTCGTATTTGGAACACAGATATTAAAACACTTAATCAAGAATACGTGCCTTCAGCACACTTGAGTGCCACTTGTACCTGCATATCTTGGGGACCATGCCGAAAGGCCAAGGAGGGACCTCAACGGAAGAAGAGGAAATCAGAGGCAGGACAGGTGGAAAATCAGGTGGACCTGTTGGCTCTGGGCACGGCTGCGGGCAGCGTTATCATCTACAGCACAGTGAAAGGAGCACTGCACTGTACACTGGACGCAAGTCACAGTGGTGTGGTGAACTGTGTGCAGTGGCACCCTGAGGACTGCCTGCTGTACAGTGGCTCAGACGACACACACATCGTAGAGTGGGACCTACAGACGGGCAAGGCGCGCTGTAAGTGGAAGGCTGATCGTGCCCCAGTGACCAGTCTGTGTGTGAGTCCGGATGGCAAGCTGCTGCTCTCAGCGGGACATACCATCAAGATGTGGGACCTCGAGACCAAGGACGTGTACCGGAAGTTCACAGGTCACTCCACAGCGGTGACGACCCTGCGCTTCGCCACCACACGCCCCCCGGATAGTAACGGCCTCTACTTCCTCTCCGGCGCAGCCCACGACAGACTCCTCAGCGTGTGGCAAGTCCGGGAGGACGGCAAGGACAAGAACTCAGTGGTGTCCTTCAACCTGACTGACGAGCCTCACCACATAGACCTCTTCACCTCCAACAGCAAGGAAGAGGCGTTGAGGCTAGCAGTGGTGTGTAAAGACGGCCAGCTTCATCTCTTTGAGCATTTTTTGAACGGGCCCTGTAAGAAGCCCCTGTCCCCGTTGTGTACAGTGCAGATGACTGGGGTGGAGGACAGCCCCATTCCCGTTCCCCTGTTGGCTGCGGCcctcactacagacacacacagcttgCTGCTGGCCTACGGCAACCACTTGCAGCCTGTCATGGAGAGAGTGGAGGTGAACACGGCAGAGAGACATGTTTGCCTGACCCGTGATGTCCACACCACCCTCTCCCTCACCATGGAAACCACAGTCTCCAAGGTGAAAACCCCAGTAGTTAATGCCAAGAGCAAAGTTGTCGTCCCTGGGCTTCCCGGTCACCAAGCGCCGGTCAAAGGAGCCCTGGGATCCGAGAAGAGAAAGAGCACAGATGCCAAAGAGATGTCTATAGAGGAGCGACTGGGCAAGATTGAGATGTCATCTGAAAAGGGTGTCAAGGGGGCCCCTTCTCTGCAGACCGACAACTTTGCGGTGCTGCTGGTGCAGGGCCTGGAGAGCAAGGACGCCAACATCCTCAATAAAGTGTTTCAGACCCGGAAGGACATGTTGATAAAGAAAACAGTTGCGCGGGTACCCCTCCCTGCCGTCTTGCCATTGGTGGAGGAGATCACCAAGAGAATGCAAGGGCATCCATACACGGCAGTGCTGATGGTGCGATGGCTCAAGGCTGTTCTCATGCAGCACACCTCCTACTTAGCCTCTTTGCCAGACCTGGTGTTTCAGCTGGGAGTATTGTACCACATGATTGAGAGTAGAGTCAAGATGTTCCACAAGCTGACCAAGCTGCACGGCAAGCTCTATCTGCTCATGACACAGGTGGTGACAAGCGGCAACGAAGTCAAAGACGTGGACCACACGGCCAAGCTTGTCTATGAAGAGGAGTCCTCTGATGAAGACAATGCTTCAGGTGACGAAGGTCTTCCAGATGAGGATTCTGATAACTGGGAGGAGGATGAGACTATGGAAGACAAGGCAGAGGAAGGCATGAGGATGGAATCAAAAGTGACTGCCGATTCCGACATAGAACCGGGGAACGAGAGCGAGGAGGAGTGACAAGCGAAGGAAACCAATTTAACAAAATAAACTACAAATGGACCTGAAAGATTTTATATGtactttcatttatttttatccttttGATTTTATCAGAACAAAATGGTTTTATAGAAAGAAATGGGCAGGCAGTGGTTGGTACATGGCGGTGAGTGGGGCTACCATCCTGCCACAACCAGGGACCTCCACTATGGAGGTGGTGTTAAATACCCACCCCACTACCAACCTGAAAGCCCCATATTTTGAAGCTGTACGAGGCTCAAGCGCCATGCTTCTCCCCCAATCGCCGCCTTTTCCACTTGATCTGTGGTTCTGGGTgtaaaccatgtgtatgtgaccatcgTCCGCACTGCTTGTTCCAGAGAAAAGGTGGGCTTGTTGCCAGACATGGGCTGCATATTTCCTGCATatgactggtcaaaagtagctcGCTATGCACCCTTGTTCTAAGTATTtaactatatagggtgccatttgggatgtaaccatGACTAATGGGTTATGTCCCCACTCAATGTATATCAGTATGAACAGTAGTGTTTGAGTCCCCCTCTTTTTCCTGAGCTACCCACCCCTCCCCCAGGTTTCTTGGTATTAAATATTCTTCTGTAAAGTATCCAACTGAACCCTTGTTTTATTTTCTGAATCTGTTTTTGGTGTCCTTAACTCCTTTTGTGCaatgattttttttgggggggtggggctTGGCAGTCAGTGTCCACTGCCTTTTAATCATAGCTGGATTGGGGACTGGAGAAAAGATGTGAACTTGGCTCGATTTAGGTGTATAAATGGCTGGTTAAACTGTGGCTGTCTAAATGCAGGGAATGTGATCAAAGGgcacttttttcttttttttttaacaatgctGTTTTGGATGCTAGTTTACTTGAATAAACTGACACTGACTGTTCCTTGA

Function

NR:

description
WD repeat-containing protein 43-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585701.2 True 2886 mRNA 0.51 17 12862989 12899263
Loading

Neighbor

gene id symbol gene type direction distance location
spdya spdya coding upstream 17512 12838288 ~ 12845477 (+)
daam2 daam2 coding upstream 1621275 11014999 ~ 11241714 (+)
gnmt gnmt coding upstream 2580882 10268951 ~ 10282107 (+)
LOC110506240 NA coding upstream 2897028 9944809 ~ 9965961 (+)
LOC110506241 LOC106561900 coding upstream 2944694 9845927 ~ 9918295 (+)
LOC110515264 LOC106583873 coding downstream 648668 13547931 ~ 13554393 (+)
LOC110506268 LOC106562017 coding downstream 669109 13568372 ~ 13718686 (+)
LOC118944575 NA coding downstream 791819 13691082 ~ 13691136 (+)
LOC110506269 cssa11h2orf71 coding downstream 915286 13814549 ~ 13821198 (+)
LOC110506270 LOC106561902 coding downstream 975957 13875220 ~ 14283131 (+)
G1998350 LOC106561878 non-coding upstream 62790 12797425 ~ 12800199 (+)
G1998319 NA non-coding upstream 113991 12748790 ~ 12748998 (+)
G1998316 NA non-coding upstream 120071 12742511 ~ 12742918 (+)
G1998292 LOC106561879 non-coding upstream 122259 12715306 ~ 12740730 (+)
G1998506 NA non-coding downstream 162266 13061529 ~ 13061781 (+)
G1998515 NA non-coding downstream 173605 13072868 ~ 13073555 (+)
G1998517 NA non-coding downstream 178015 13077278 ~ 13077507 (+)
G1998533 NA non-coding downstream 198453 13097716 ~ 13098057 (+)
G1998536 NA non-coding downstream 200930 13100193 ~ 13100409 (+)
G1994851 NA other upstream 3296835 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 3472056 9390568 ~ 9390933 (+)
G1993783 NA other upstream 4164866 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 4194722 8666601 ~ 8668267 (+)
LOC110512379 LOC106587994 other upstream 4311622 8537913 ~ 8553492 (+)
G1998628 NA other downstream 322774 13222037 ~ 13222681 (+)
G2002614 NA other downstream 2790505 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 2895869 15734525 ~ 15800073 (+)
G2002823 NA other downstream 3172724 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 3713222 16609650 ~ 16614319 (+)

Expression

wdr43(LOC106561875) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

wdr43(LOC106561875) Expression in each Bioproject

Bar chart with 21 bars.
wdr43(LOC106561875) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network