LOC110506268 (LOC106562017)


Basic Information

Item Value
gene id LOC110506268
gene name LOC106562017
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 13568372 ~ 13718686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585704.2
TCGCTTCAGGATCTCCTCTGCCCCTAACTTGCACACAGGGGCTAGCAGTGGTGTGTGAAGTGTGCACACATCCATTctgactctgacacacacacacacacctgcacactcCATTTCAGCCACCTCTCGCAGTGAGGTGCAGGGTGTCATTTACGCACGCCACCTGTCAGCTTTAGAAAGAGTCTCCACCAAAAGCTTGTCCACCCAAGTGGGAACTGAAAAGGGGCATGCACCACCAGGCTAAGGAAGAGGGGGACCCTCCAAAATtgcaaggggaggaggagggggactcAAACCCCACAGGCTCTTCGGGAACCCAGTCTGCCCCCTCTCCCGAGACCACTATGGAGGGGGAAACTCAGCTGGAGGAAGAGGGGACCCCTGCTCTGACCCCCTACCCAAACAGTAGGCTCGGGGGGTCCTGTCGCCTGGGGTGTCTACTAGTGGCCCTGATCTTGATGCTCATCTCTCTCCTCGGCAGCTGGGCGGTGGTCCACCTCATCCTGGGATCCCGCGGAACCACGCCCTTCAGGATCCAGGCCAGTTATGACCGGCCGATCGAGCAGGACGCCACCGCCACCATCGACCCGGGTTTCACCACTACCATCGAACCGGGCTTCACCACCAACTGCACAGTGGATCCCTACCCAATCCACAACATCACCCTCCAGGGCCAGTACCACTGTAACCAGGGCCCAGGGGTCCCTCTTGGACAGCTGTGTGACTTCAAGATGGACTGCCCGCTCGGCGACGATGAAGGGAACATGTGCCGTCAGTTTCTCAATGGCAGCTATTGCTCCTTCGAGGACGGTGAGTGCGGATGGCAGCCAATTGCAGCCAAGGGATCCTCCTGGAGGCGTGTTCGCACCATTCCAAAGAAGGTGCGGCCTAGCTGTCCATCATCCTCAGGTGCCATGTTCAGTGTGGATGGAGGACAGTCCAAGGGTCAGCAGGGGTCCGCATTGCTCAGGagccctctcttccctcctcccctacGGAACTCTCCATGTGAGGTACGGTTCTGGATGTGTTCCGGAGGTGGCCAGAGATGGGCGCTATCTTTGTGGCTGGTGGAGAACAGCACAGGACCTAAGGAGCAGCGCAgactgtggcactctgccagcgAGCCCAAGACCGAGAGAGGCTGGAGACTCATTATGCTTCCTCTCTACGGACTTGTTGACTGGTTCTGGCTCCAGTTCAGCGCTGACAATGGACCAGGTCCAGGATCAGCCATTTGTCTGGATAACATCTCCTTCAGTATGGACTGCTTCCTGGCCTCCAATGGCGACTTTCCTCCTACTGTAACTGGCAACACTAAACTGCCAATGAAACCAACCAATCAGAACATCAAAACAACAACCCCGTCCAATGGAAACTCAAGAACCTTGTCAGAACATCCAACTCTGACTGCGTACACCAAATGGGCCTTTCACACTTGTGGGGCAGTGGGTTCAGAGGGGCCCACCCCAACGCAGTGTAGCAGCTCATATCGGAACAGCAACATCAACGTTACCGTGGCAACCAGAAGCCCATTCAAAGGCATCCAAATCTGGAGAGTGCCGGAGACTGGCAGCTACAGGATCACAGCTTGTGGGGCAGCTGGAGGTCGCAGTGTATTGACCATGGCCAAGTCACATGGTGTCCAACTCACAGCAGACTTCCTGCTTCAGGAGGGCGAGTTGCTTCACATCCTGGTGGGCCAAAAAGGAGAGGACGCCTGCCCCAATACCAACGAGATCCTAAACAAGATCTGTGTGGAGCAGAAGCCATTGGAAAACAAGACGCTGGTCCAAGGGGGCGGGGGCGGAGGAGGCGGAGGCGGAGCCACCTATGTGTTCAAGGTGCAGAGGGGTGTCCACATCCCCCTGATCATCGCAGGTGGGGGTGGGGGACGTGGGTACAGCAGCCAATCCGACAGCCAGAATGAGTTGATGGACGACCCCAAAGTACCAGGGCGCAACGGGAAGTCTGGCGCAGCAGgTGGAGGCGGAGGTTGGCATGACATTAACCCTGGGTCTCAGGGCGGGAGACCCCTCATACTCGGAGGCCAGGGGGGGCAGCCCTGTATTAAGTTCAGCTGGGAGACCCGAGGGGGTTTCGGGGGAGGGGGAGGTGCCTGTACAaccggtggtggaggagggggctATAGAGGTGGCAGCACCTCTGAAGCTAATGACCCAAAGCAGGATGGAGACGACGGCTCCTCTTTCATCAGCCCAGAGGGAGAGACCTTCCTGGACCCTCTGAAAGGTATGGAAAGTGATGGAGAGGTGATCATTGGCCCCGTGCTAAACTGTAGCCACTGTGAGACGGGCGAATGTCACAAGAACGAGGAGGGGACCTTGTGTTACTGTGAGGTGGACTTTGTACTGGCCCGCGACGGTGTGTCTTGTATCAACTCATCaacagAGgtgtctcccctgcctccccAGCCCTCCCTGTCCCAGTTGGCCCTGGTTCTGTCTGTGGGGACTTCAGCCCTCATTGCTGCCCTGCTGTTGGCTGTGTCTGGAGTCATGATCATGTACAGACGTAAGCATACAGAGCTACAGTCCATTCAGCTGGAGCTCCAGAGCCCGGACTGTAAACTGAGCAAGCTGAGGGCTTCAACCATCATGACTGACTACAACCCCAACTACTGCTTCGCTGGGAAGTCCGCCTCTGTCAACGACCTGAAGGAGGTGCCCCGACGCAACATCTCCCTCACCAGGGGTCTGGGACATGGTGCCTTTGGTGAAGTGTATGAAGGGATGGCAGCGGGGATACCTGGAGAGCCCAGTCCCATGCAAGTAGCAGTCAAGACACTCCCTGAGGTGTGCTCTGAGCAGGATGAGCTTGACTTTCTCATGGAGGCTCTCATTATCAGTAAATTCAGCCACCAGAACATAGTGCGGTGTATAGGGGTGAGTCTACAGGCCCTACCACGCTTCATCCTATTGGAATTGATGGCTGGAGGAGACCTCAAGAGTTTCCTGAGAGAGACGCGACCCAGACTGGAGCACCCTTCTAGTCTATCCATGGAGGACCTGCTCAACGTGGCCAGAGACATAGCACAGGGATGCCAATACCTGGAGGAGAACCAGTTTATACACCGGGACATTGCGGCCCGGAACTGCCTGCTGACCACCAAAGGACCAGGGAGAGTGGCCAAGATCGGGGACTTTGGAATGGCCAGAGACATTTATAGGGCCAGCTACTACAGAAAGGGTGGGCGCGCCATGCTGCCTGTGAAGTGGATGCCTCCGGAAGCCTTCATGGAGGGGATCTTCACATCCAAAACGGACACATGgtccTTTGGGGTGCTGCTATGGGAGATCTTCTCTTTGGGCTATATGCCCTATCCCAGTCGCAGTAACCAGGAAGTGTTGGAGTTTGTCACCAGTGGGGGAAGGATGGACCCTCCCAAAAACTGCCCAGGGCCTGTgtacCGGATAATGACACAGAGTTGGCAGCATCAACCGGAAGACAGGCCCAACTTCTCCACCATCTTGGAAAGGATTGACTACTGCTTACAGGACCCTGATGTGGTGACTGTTCCCTTGCCTGTGGAATATGGCCCCCTCCCTGAAGAGGAGGAGCGGGTACCCATGCGCCCTGAGGACCCCATGGCCTCCCCCCTGCTGGTGTCCACTCTGACGCCTGACGGTGTGGGCCCCGCACCGTCAGCCCCGAAGCCCACCGAGGAGAACCGAAGAGTTGAACAACCCCTCCTCCTTACCAACCAGCTCCCCGAAACCTGCAAGCCCCAGGCGATGGCTCAACAACCCCAGCCCCACCCCCAGACATTCACCATGACCACAGCCACCTCCAAGGCACCTCCCCCCATCTCCACCCAGCAACCTAACCCAGACGGTGGCCACGTCAATCTGGCCTTCACCCAGGGCCACCCTGGGGATAAGGAGGGTCGCAATGGGAAACCCACCAACCTGTGGAACCCCACTTACGGCTCCTGGTTCCTCCAGCTGCAGCAGCAGAAGAAGCAGCATCATCAGCAACAAccgcagcaacaacaacagctgcaGCAAAAGCAGGAAACAGTGGGCAGTGGAGGTGGGGGAGTTGGAGGTGGGAGGGTGCCAGGCGAGGGGCAGGAGCACAAGGGACGGACTGTGGCCGAGGCGGTGGGGGCCCTGAGTCTCCAGCACCAGCAGCACAAGCATCAGTTCCAGCCACCATACCCCTTCCATccacagcagcaacagcagttgCAGCTCTTACATcaccagcagcagcaacagcaggggTTCTGCAGGCCGCTTTTGCCACCTCCGCCACCACCCCAGGCTACCTCCTTGGGTACCACTGATCCTACCCCGCTCCTGTTAGATTCGGCCACCCTACCCCCGGTCCCACTATTTAGACTTCGCAGATTCCCCTGCGGGAACATCGGCTATGGCTACCAGGAGCAAGGGTTACCCCTAGAGGCAGCCCACCACCACCAGAATCCTGTCTCTGTCAACCCCCCTCCTCCACCgccccctcccccaccacccgTGGCCCTCCAGAGAGGAGTGGCGGGGACCCAGCTGTCGCTGAGCCACTCGACGACGGCCAAAGCCGAGGACagcctccctctgctggtcaccATGGGGACGGTGCAGGACCCGAGGCTTCCACGGATGGAGGGCCACAATGCCACAGTGCTTTAACCCCTCCAACCACCAACCTACACCTTGGAGACCGTGTGTACAGACAGATAGGCATACAGCCAGACATGATGATACACCGTGCAACACTGTGTCAGGACACCTTACGACCAGCCCTCCCGTCTCGACTCCTTGGTTTCATCCACCGATTGGATCAAGCTATTGTATTGAGTCCAAAACGTTTCATCCCAATGACATAAAATGGCTGTGGAAATTACAGTGGGGTGTTAAAGCACATTGGAGAGCTGCAAAGGACCACTAAGAAGAAAAGCTTATTGGTTGTTGGCTAGGAAAACAGGAACAATGTACATGTTGCAGCACTGGCTAATGTTCAGTAGACAATTGTGGCAGGACGGTTAGATGTTTCCATTCGGTTGCTAATTTCTTTGCAATGTGTTCACGAGCCGACCGCTCATCTTCGCGGCTCTGTCGATGTCAACGTAGCCTTTCACATGGAGTCATGCTGGAAACACACAAACAGAACATACATACACATCTGCTAGATGTCTAACTGACTGTAGCATTAGCTAACTTCTTCTCTAGCTGTCATTCATTGCGGGTTATCTATTTCATTGGCAATTCAGGCCTTGGCAGTTGATTCATCAATCAGAAACAATTTTCCCAAAATATGGTGAGAGTCGGAGACTGGATTCCTGAGTTTTTTTGTGGGTTTTTTTTACAATGAAGAAAAAATGTGTTTGTTGATGCTTGCTTGCCTGcttgtttatttattaatttgTCTATTTATTATTTGGGAGCTCTATAAATTATTAATACACCAACCTTATCCAATTTAGtttgacatactgtacatgggTTAGCTATTTTACTTTTTTTTGCACTAATCTTTGTCCAATGTCGACTTAATTGAATTAATATCAACCCTTGTGAACAATGGCCAATGCACTGAATGGTATTTCAGATAGTTGGAATCAGTACTCATGGTGATGTAGGTTGCTATGGTATGAGGGTGGGAGTGAAAGGGAATTGTTGGGGGAGTGTAACGGTGCCATGAGTATGGGAGTGGCTGTCTTTGCAATTTAAGGTGTGTGATTAGGTGTGTTTgagcgagagggaaagaaagacgGACAGAAATATTTTTCTTAGAAGGGCAATACTATGGAGCTTACTGTACACTGATCTTAAATGTTTATTCAGGCAAGTTCACCTTCCATTTCTCCTTAAATATGttttatatgtatataatatgGCCCTCTATGGAAAGACAGAAATTACTGTTCCATGGATTCTTATATGTGGCAATTCATTTAAATGAAAGTGgtggtgtccatatacttttgtatataaagtaccaatcaaaagttttagaatacctacttattcaagggtttttctttatttttgctattttctacattgtagaataatagtgaa
>TU2287057
TGGCTGTCTTTGCAATTTAAGGTGTGTGATTAGGTGTGTTTgagcgagagggaaagaaagacgGACAGAAATATTTTTCTTAGAAGGGCAATACTATGGAGCTTACTGTACACTGATCTTAAATGTTTATTCAGGCAAGTTCACCTTCCATTTCTCCTTAAATATGttttatatgtatataatatgGCCCTCTATGGAAAGACAGAAATTACTGTTCCATGGATTCTTATATGTGGCAATTCATTTAAATGAAAGTGgtggt

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0000187 activation of MAPK activity biological_process
GO:0048666 neuron development biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585704.2 False 6044 mRNA 0.54 25 13568372 13718686
TU2287057 True 262 lncRNA 0.35 1 13718316 13718577

Neighbor

gene id symbol gene type direction distance location
LOC110515264 LOC106583873 coding upstream 13979 13547931 ~ 13554393 (+)
wdr43 LOC106561875 coding upstream 669109 12862989 ~ 12899263 (+)
spdya spdya coding upstream 722895 12838288 ~ 12845477 (+)
daam2 daam2 coding upstream 2326658 11014999 ~ 11241714 (+)
gnmt gnmt coding upstream 3286265 10268951 ~ 10282107 (+)
LOC110506269 cssa11h2orf71 coding downstream 95863 13814549 ~ 13821198 (+)
LOC110506270 LOC106561902 coding downstream 156534 13875220 ~ 14283131 (+)
LOC110506272 LOC106561904 coding downstream 780861 14499547 ~ 14521213 (+)
rlbp1a LOC106561906 coding downstream 823231 14541917 ~ 14564575 (+)
LOC110506274 LOC106561907 coding downstream 858192 14576878 ~ 14597147 (+)
G1998835 NA non-coding upstream 44871 13523249 ~ 13523501 (+)
G1998834 LOC106572279 non-coding upstream 45359 13522115 ~ 13523013 (+)
G1998833 NA non-coding upstream 48200 13518925 ~ 13520172 (+)
G1998832 NA non-coding upstream 49828 13518241 ~ 13518544 (+)
G1998829 NA non-coding upstream 52629 13515534 ~ 13515743 (+)
G1998454 NA non-coding downstream 690 13719376 ~ 13719783 (+)
G1998455 NA non-coding downstream 1599 13720285 ~ 13720543 (+)
G1998453 NA non-coding downstream 2115 13720801 ~ 13722222 (+)
G2000152 NA non-coding downstream 31642 13750328 ~ 13750649 (+)
G2000276 NA non-coding downstream 121830 13840516 ~ 13841174 (+)
G1998628 NA other upstream 345691 13222037 ~ 13222681 (+)
G1994851 NA other upstream 4002218 9560723 ~ 9566154 (+)
G1994757 LOC106613263 other upstream 4177439 9390568 ~ 9390933 (+)
G1993783 NA other upstream 4870249 8697174 ~ 8698123 (+)
G1993771 herc1 other upstream 4900105 8666601 ~ 8668267 (+)
G2002614 NA other downstream 1971082 15689768 ~ 15696280 (+)
LOC110506284 LOC106561914 other downstream 2076446 15734525 ~ 15800073 (+)
G2002823 NA other downstream 2353301 16071987 ~ 16074044 (+)
fshb LOC100136594 other downstream 2893799 16609650 ~ 16614319 (+)
G2004946 LOC106587126 other downstream 4151873 17870559 ~ 17880793 (+)
LOC118944575 NA coding upstream 27180 13691082 ~ 13691136 (+)
G1998964 NA non-coding upstream 3177 13714773 ~ 13715139 (+)
G1998955 NA non-coding upstream 12190 13705904 ~ 13706126 (+)
G1998942 NA non-coding upstream 28530 13689511 ~ 13689786 (+)
G1998933 NA non-coding upstream 39546 13678537 ~ 13678770 (+)
G1998908 NA non-coding upstream 79152 13638925 ~ 13639164 (+)

Expression


Co-expression Network