Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110506276 |
| gene name | LOC106587060 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 14613586 ~ 14678505 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| SH3 and multiple ankyrin repeat domains protein 2-like isoform X6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036964121.1 | False | 8978 | mRNA | 0.50 | 10 | 14613586 | 14678505 |
| TU2290184 | False | 2991 | lncRNA | 0.37 | 2 | 14613588 | 14616686 |
| TU2290186 | True | 607 | TUCP | 0.60 | 1 | 14633002 | 14633608 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506081 | prmt3 | coding | downstream | 117034 | 14377418 ~ 14496552 (-) |
| LOC110506271 | LOC106561903 | coding | downstream | 244713 | 14318304 ~ 14368873 (-) |
| trmt61b | trmt61b | coding | downstream | 1756922 | 12845479 ~ 12856664 (-) |
| LOC110506264 | LOC106561878 | coding | downstream | 1778297 | 12776493 ~ 12835289 (-) |
| LOC110506082 | LOC106561908 | coding | upstream | 24603 | 14703108 ~ 14788733 (-) |
| LOC110506277 | NA | coding | upstream | 215990 | 14894495 ~ 14898577 (-) |
| LOC110506083 | LOC106587061 | coding | upstream | 407683 | 15086188 ~ 15095528 (-) |
| LOC110506281 | LOC106561910 | coding | upstream | 434064 | 15112569 ~ 15147518 (-) |
| LOC110506286 | LOC106561915 | coding | upstream | 1121987 | 15800492 ~ 15809734 (-) |
| G2001449 | NA | non-coding | downstream | 25733 | 14586587 ~ 14587853 (-) |
| G2001416 | NA | non-coding | downstream | 72456 | 14540907 ~ 14541130 (-) |
| G2001414 | NA | non-coding | downstream | 74153 | 14539137 ~ 14539433 (-) |
| G2000882 | NA | non-coding | downstream | 324719 | 14283071 ~ 14288867 (-) |
| G2001511 | NA | non-coding | upstream | 21379 | 14699884 ~ 14700123 (-) |
| G2001519 | NA | non-coding | upstream | 31206 | 14709711 ~ 14710005 (-) |
| G2001520 | NA | non-coding | upstream | 32243 | 14710748 ~ 14780567 (-) |
| G2000879 | NA | other | downstream | 334840 | 14278141 ~ 14278746 (-) |
| G2000052 | NA | other | downstream | 983511 | 13629784 ~ 13630075 (-) |
| G1999980 | LOC106561221 | other | downstream | 1092066 | 13520686 ~ 13521520 (-) |
| G1999856 | NA | other | downstream | 1275435 | 13337335 ~ 13338151 (-) |
| G1996949 | NA | other | downstream | 3195251 | 11418099 ~ 11418335 (-) |
| G2003219 | LOC106561912 | other | upstream | 1037043 | 15715548 ~ 15718308 (-) |
| nav2a | LOC106587075 | other | upstream | 1277122 | 15900960 ~ 16211028 (-) |
| G2003819 | LOC106561933 | other | upstream | 2042486 | 16720991 ~ 16723682 (-) |
| G2005166 | NA | other | upstream | 3208940 | 17887445 ~ 17890081 (-) |
| G2005456 | LOC106561978 | other | upstream | 3515605 | 18194110 ~ 18199589 (-) |
| LOC118944583 | NA | coding | downstream | 1821543 | 12791911 ~ 12792045 (-) |
| LOC118944582 | NA | coding | downstream | 1832062 | 12781392 ~ 12781526 (-) |
| G2001473 | NA | non-coding | upstream | 12514 | 14629200 ~ 14629466 (-) |
| G2001482 | NA | non-coding | upstream | 31749 | 14648435 ~ 14648692 (-) |
| G2001489 | NA | non-coding | upstream | 46519 | 14663205 ~ 14674139 (-) |
| LOC110506276 | LOC106587060 | other | upstream | 16316 | 14613586 ~ 14678505 (-) |
| G2001456 | NA | non-coding | downstream | 11128 | 14606888 ~ 14621874 (-) |
