LOC110506082 (LOC106561908)


Basic Information

Item Value
gene id LOC110506082
gene name LOC106561908
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 14703108 ~ 14788733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036964122.1
AGCTGAATTCGTCCGGCCTACTGACTATGCCCCGGAGTCCCACGTCCAGTGAGGATGAGATGGCCCAGAGTTGTTCTGACTACTCAGAGGACTCCGCCTCTGACAGCTCCCGTGAAGAGACCATCTACGAGACCATAAGAGCCACCGCCGAGCCGGCCCCCAGACACATGGACGACATACACACTCACTCCCTGGTCGTCCGCATCGTCATCCCTGACCTGCAGcagacaAAATGTATGCGCTTCAACCCAAACGCAACCGTGTGGGTTGCCAAGCAGAGGATCCTGTGCACGCTGAACCAGAGTCTGAAGGATGTGTTGAACTACGGCCTCTTCCAGCCCGCCATGAACGGACGAGACGGGAAGTTCCTGGATGAAGAGCGCCTCCTCCTGGAATACCCACAGCCAATCAGCAAAGGAGTTCCATCTCTGGAGTTCCGCTACAAGAACCGAGTCTACAGGCAGCCCCATGTGGAAGAGAAGCAGATTGCCAAACTTCACACCAAGgCCAACTTGAGAAAGTTTATGGACCTCATCCAGCACCACCAGGTGGAGAAAGTATCTAGGCTGCTGGAGAGAGGGCTGGACCCCAACTACCAGGATACAGAGACCGGTGAGACCCCCCTGACGTTTGCGGCCCACCTGGATAACGTGGTGGAGATCATAAAGATTCTGAAGAATGGAGGGGCCCACCTGGACTTCAGGGCCAAAGACGGCATGACGGCCCTACACAAAGCTGCTAGGTCCAAGAACCAGGTTACTCTGACgACCCTGTTGGAGCTTGGTTTGTCTCCAGACTATAAGGACAGCCGGGGTCTGACGGCGCTCTACCACACAGCCATGGTGGGAGGAGACCCGTTGTGCTGTGAGTTGCTGCTACATGAACACGCCACCGTCTGCTGCCAGGACGAAAACGGCTGGCACGAAGtccaccaggCTTGTCGGAATGGCTTTGTCCAGCATCTGGAGCATCTGCTGTTCTACGGGGCGGACATGAGCGCACAGAACGCCTCAGGGAACACAGCGCTGCACATCTGTGCTCTCTACAACCagGATAACTGTGCCAGGGTGCTGCTGGTCCGTGGAGCCGACAAAGCGGTGAAGAACTACAACAGCCAGAGTCCCTTCCAGgTGGCCATAATCGCAGGGAACTTTGAACTGGCTGAACTGGTCAAGAACCACAAAGAGACAGATATAGTGCCTTTCCACGAGGTCCCGGAATACTCCAAGCGGCGTCGGGCACTCCCCCCTACCAGCAGCAGCGGCAGCTCCCTGGCGACCCCCCGGGTCCTGCTGCGCTCCAACAGTGACAACAACCTCACGGTGAGCCAAGGGCCCCCCCAGGACTGGTCCCAGCCCCAGGGACCCCCCCAGCACCACAGACCCCAACACGGAGGGGTCGgaccccccacctccacctcccaccATATCCTCTCTCCACAGCTGCTCCAGCAGATGCAGGGGAACCCCAATGGCACTGTGAGCACTATGGGCCAGGGGTCCCGCAGTACCAGCGTGGGGGTGGTCCCCCGGAGTCAGTCCCCGTCCCTCAACCGGCTGGGAGAGGAGGCCCGCAGGCCGCACCCGCAGACACATGTACAGACACAGCAGACGCAGCACAGACAGCCCAGCCCCAGTGGTaatgtggaggtggtggtgcaGCGGAGGAAGCTGTACAGTGCTGTGCCAGGGAGGCACTTTGTGGTGGTCCACGCCTACCGGCCACAGGCCGAGGGAGAGATCCCCCTCTACAAGAACGACAGGGTCAAAGTTCTGAGCATCGGAGAGGGGGGCTTCTGGGAAGGCAGTGCCCGGGGCCAGGTGGGCTGGTTTCCTGCGGAGTGCGTGGAGGAGATTCCTGCCAAGCCCAGCGAGGAGAGGATGCGTAAGTCATTAAGCATGCTGACCCAGATATTTGGGAATAGGAGAGTGGTTGGGGatctctgaggaggaggagggaagattTCTGCTCCATGGATCCCACTGGTGGCATCCTAGGGCACTGAGACTCTTCCACCCAGGAGATGGGCTCAGCACTGGGACTATTTAGTGTGTACAGATCCAAAATAATTGGATTGGTGTGATGTGGAAGAATATGGAGGCAAGTCCCCTAAGCCCAATTAACACAATAGGTGGAGCCGTCAGCATTTGACTGCCTACCAAAGGTGTGGAGGGGCTAGGGGATCTTTCCAGACCTgacaagagagaaagaggtagagagagagtagagacggaggagggagggggttcaATGGAGGGTAAGGCCTGATCCCCCAcattccttctctcccctctcctccccctcctctcctctcaagcCACACTGTCAGATGTCAGACATGTGGGGCTTTAACGGTgatgtgtattcatggatgcaaagggaagccaggcttccccaaaataaaaatgtgcataatttatctctctgtctttcataattttccttcaatttgcaagaggctgaatgtatctcactggagaaagcatccgagcgagctaAACAGCATCCTTCTGTCCGGTCAAAAAGACTATGACATTGTGGC
>TU2290236
CTCTTCCACCCAGGAGATGGGCTCAGCACTGGGACTATTTAGTGTGTACAGATCCAAAATAATTGGATTGGTGTGATGTGGAAGAATATGGAGGCAAGTCCCCTAAGCCCAATTAACACAATAGGTGGAGCCGTCAGCATTTGACTGCCTACCAAAGGTGTGGAGGGGCTAGGGGATCTTTCCAGACCTgacaagagagaaagaggtagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036964122.1 False 2542 mRNA 0.57 12 14703108 14788733
TU2290236 True 217 lncRNA 0.49 1 14703426 14703642

Neighbor

gene id symbol gene type direction distance location
LOC110506276 LOC106587060 coding downstream 24603 14613586 ~ 14678505 (-)
LOC110506081 prmt3 coding downstream 206556 14377418 ~ 14496552 (-)
LOC110506271 LOC106561903 coding downstream 334235 14318304 ~ 14368873 (-)
trmt61b trmt61b coding downstream 1846444 12845479 ~ 12856664 (-)
LOC118944583 NA coding downstream 1911063 12791911 ~ 12792045 (-)
LOC110506277 NA coding upstream 105762 14894495 ~ 14898577 (-)
LOC110506083 LOC106587061 coding upstream 297455 15086188 ~ 15095528 (-)
LOC110506281 LOC106561910 coding upstream 323836 15112569 ~ 15147518 (-)
LOC110506286 LOC106561915 coding upstream 1011759 15800492 ~ 15809734 (-)
LOC110506287 LOC106587073 coding upstream 1028112 15816845 ~ 15819030 (-)
G2001511 NA non-coding downstream 2985 14699884 ~ 14700123 (-)
G2001489 NA non-coding downstream 28969 14663205 ~ 14674139 (-)
G2001482 NA non-coding downstream 54416 14648435 ~ 14648692 (-)
G2001473 NA non-coding downstream 73642 14629200 ~ 14629466 (-)
G2001456 NA non-coding downstream 81234 14606888 ~ 14621874 (-)
G2001633 NA non-coding upstream 115024 14903757 ~ 14904010 (-)
G2001824 NA non-coding upstream 295838 15084571 ~ 15085091 (-)
G2001905 NA non-coding upstream 319708 15108441 ~ 15111787 (-)
G2001919 NA non-coding upstream 359617 15148350 ~ 15148628 (-)
G2000879 NA other downstream 424362 14278141 ~ 14278746 (-)
G2000052 NA other downstream 1073033 13629784 ~ 13630075 (-)
G1999980 LOC106561221 other downstream 1181588 13520686 ~ 13521520 (-)
G1999856 NA other downstream 1364957 13337335 ~ 13338151 (-)
G2003219 LOC106561912 other upstream 926815 15715548 ~ 15718308 (-)
nav2a LOC106587075 other upstream 1166894 15900960 ~ 16211028 (-)
G2003819 LOC106561933 other upstream 1932258 16720991 ~ 16723682 (-)
G2005166 NA other upstream 3098712 17887445 ~ 17890081 (-)
G2005456 LOC106561978 other upstream 3405377 18194110 ~ 18199589 (-)
G2001519 NA non-coding upstream 6069 14709711 ~ 14710005 (-)
G2001520 NA non-coding upstream 7106 14710748 ~ 14780567 (-)

Expression


Co-expression Network