LOC110506083 (LOC106587061)


Basic Information

Item Value
gene id LOC110506083
gene name LOC106587061
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 15086188 ~ 15095528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110506083
ATGGAGAGCAGGGAGGATGCCTATGCCCACCTGGAGCTACATACCTTGGAACAGTCCCTTCTGGCCACATGCGTGGGCAGCATCACAGAactcagTGACCTGGTGTCACAGTCCATGCACCACATACAGCGCCATCGCGCGGTATACCCCTCCGTCAGCCCTATTCACccagctaatcagcattcagtATTCTGGGCGCCCGATGATGTGCGTACCCTCTACTACTACTTCCTGTCTAGCCCACAGATGGAATCACTGGAGAACCCAAATCTAGATCCCCCCAGGATGGCCCTGAGCAGAGAGAGGAAAGTGAATGAATTATATTACTTCATTGCTTGAATCTTTATGCTCCTTCCCCCTCTGATGGAGTGGATACGAGTTGCCGTGGTGCACGCGGAGCACCGCCGCAGCCTATTGGTGGACAGCGATGATGTCAGACAGACCACCAGACAGCTCCTCCCAGGATTGGACTGTGAGCCCAGACCGCTGAGgcctGAGTGTTGCTCCAGCTCATTTAGGCGTGCGGACTCTAAGGCTGCTACAGAGAAGCGTACGCTGACCTGTGGCAGAGCGGACCTGATTGGTCCGGCAACACAGCTACTGGGACCATCAGGGGTTAACGCTATGGATGACCAGGGTATGACCACTCTGATGTACACATGTTCGCGTGGAGACGAGTCTCTGGTCCAGATACTGGTGGAGGCTGGAGCCAACCTGGACCTGGCGGTTCCTTGCTGTTCCCCCAGACAGCCCTCGGTCCACCCAGACCGTCGTGGTTGGGTGGCCCTCACCTTCGCTGTGCTGCATGGACACCTCGTGGTATCTCAGCTCCTGTTGGAGGTGGGTGCAGATGTGGAGGGCACTGCTGTTACTTCCAGCCAGGAGAGCTCTGCTGAGACTCCTCTACAGCTGGCCTCTGCTGCTGGGAACTATGAAATGGTGAGCCTGCTGCTGGCCCACGGGGCCGACCCGCAGAGTGCATGATTGGAACGCTCCTATATCCCCGCTCTACAAGGACATGAACTGCTTCAGCTTCGTCCAGACACACTCCTACAGGAACGTCCTGAGGAGGCTTCTGACTCAGCCCCAGCAGAGGAAGGAGGACATTCTCTCTCTGCTGGAGATACTGGCTGAGGGGTTccaggagaaggaagaggaggctggCTCACTACCTCCCCCCAGCCTCAGCCCTTGTAGCCCTGCTGTCTACCTCAGTAGCAGCAGGCTGCCTACTAAGGCACTGTGCATGGTTACCTGGATGTCACCATGGAGCTACGATCACTGGGTGTCCCCTGGAAGCTCCACGTGTGGCTGGAGTCCCTCCATGTAGCCCAGCAGCTAACCAGGAATGAggtgaccctctctctcctcagagacTTCACCACTATCAGGCCACGGGGCCCACTGCCAGGAGCTGGTCTCGCCCGCCCTACCTCTCTTGTTTAACATGCCTGCAACCAGCAAGAACTATGCCATAACCAAGAGACTGTCAGCCATCTTCTCTCGCTGCTACGGCTCTGCTCCTACTCCCTCTGTTCCTCCGATGGACCTCGCTCTCTCCACGCAGCTAGATGCTCATTTCCTGAACAACCCAGAGATGTCTGATGTAATGTTGTTCGTGGAAGGCCGTCCCTCCTACGCCCACAGGGTCCTCCTCATGTCTGCCTCTAAGAGCACCTTCCAGAGGATGATGAGTTGTCTGTACTGTGGAGGGACTGAAGGGCTGAGGCTGTCACAGGCTGACGCTGTGGAGCAGCTGCCGCCAGTGGTCTGTTTCTTCCAGCTAAAGGTGCTAGAGAGGCAGTGTGagattctgctctctctctctgtaccggATCACGGGGCGGCAGAGTTCAGGAGGTTCTGTGAAGGTGTCTTCCTGCAGCACATGGAAAAGCTCCTGGAGAGAGAGGACTTCCACAGGCTGCTCCTGGGAGGGGCCCGTCGGGACCAGCTTCCTCCAAAGACAGAGCCCCGGAGTGGACCACGTCAGGACcgacactcctctctcctcctggagGATTTGGAGGGCACTTTGGTCCACAGGCTGCTCTTGCTCTACCCTCCCTGCAGAGAGTAA

Function

NR:

description
PREDICTED: ankyrin repeat and BTB/POZ domain-containing protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110506083 True 2080 mRNA 0.57 13 15086188 15095528

Neighbor

gene id symbol gene type direction distance location
LOC110506277 NA coding downstream 187611 14894495 ~ 14898577 (-)
LOC110506082 LOC106561908 coding downstream 297455 14703108 ~ 14788733 (-)
LOC110506276 LOC106587060 coding downstream 407683 14613586 ~ 14678505 (-)
LOC110506081 prmt3 coding downstream 589636 14377418 ~ 14496552 (-)
LOC110506271 LOC106561903 coding downstream 717315 14318304 ~ 14368873 (-)
LOC110506281 LOC106561910 coding upstream 17041 15112569 ~ 15147518 (-)
LOC110506286 LOC106561915 coding upstream 704964 15800492 ~ 15809734 (-)
LOC110506287 LOC106587073 coding upstream 721317 15816845 ~ 15819030 (-)
LOC110506224 LOC106561917 coding upstream 733063 15828591 ~ 15832167 (-)
nav2a LOC106587075 coding upstream 805432 15900960 ~ 16211028 (-)
G2001824 NA non-coding downstream 1097 15084571 ~ 15085091 (-)
G2001633 NA non-coding downstream 182178 14903757 ~ 14904010 (-)
G2001520 NA non-coding downstream 305621 14710748 ~ 14780567 (-)
G2001519 NA non-coding downstream 376183 14709711 ~ 14710005 (-)
G2001905 NA non-coding upstream 12913 15108441 ~ 15111787 (-)
G2001919 NA non-coding upstream 52822 15148350 ~ 15148628 (-)
G2002280 NA non-coding upstream 221921 15317449 ~ 15371915 (-)
G2002324 NA non-coding upstream 282815 15378343 ~ 15378554 (-)
G2002527 NA non-coding upstream 487547 15583075 ~ 15583305 (-)
G2000879 NA other downstream 807442 14278141 ~ 14278746 (-)
G2000052 NA other downstream 1456113 13629784 ~ 13630075 (-)
G1999980 LOC106561221 other downstream 1564668 13520686 ~ 13521520 (-)
G1999856 NA other downstream 1748037 13337335 ~ 13338151 (-)
G2003219 LOC106561912 other upstream 620020 15715548 ~ 15718308 (-)
G2003819 LOC106561933 other upstream 1625463 16720991 ~ 16723682 (-)
G2005166 NA other upstream 2791917 17887445 ~ 17890081 (-)
G2005456 LOC106561978 other upstream 3098582 18194110 ~ 18199589 (-)

Expression


Co-expression Network